Chemically Modified siNA Molecules for Stable RNAi Delivery

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Solution Overview

Problem

Existing RNA interference (RNAi) therapeutics face challenges due to the instability of RNA molecules, limiting their suitability for administration and compatibility with different delivery systems and routes, necessitating a diverse repertoire of chemically modified short interfering nucleic acid (siNA) molecules.

Innovation Solution

Development of chemically modified double-stranded siNA molecules with specific structural and chemical modifications, including 2′-deoxy-2′-fluoro, 2′-O-alkyl, and ribonucleotide compositions, covalently attached to ligands or polymers via linkers, and formulated with cationic lipids and carriers for enhanced stability and delivery.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Reliability

If chemically modified siNA molecules are developed to enhance stability, then the reliability and duration of action improve, but the device complexity and manufacturing precision requirements increase

Engineering Contradiction:
Improvestability of siNA moleculesVSAvoidstructural modifications of siNA molecules
Core Design Contradiction:
ReliabilityVSDevice complexity

Solution Approach 1:

The patent applies parameter changes by systematically modifying the chemical structure of siNA molecules through various substitutions including 2′-deoxy-2′-fluoro modifications, 2′-O-alkyl modifications, and phosphorothioate backbone modifications. These parameter changes in molecular structure directly enhance the stability and reliability of siNA molecules while maintaining their RNAi activity, resolving the contradiction between improved reliability and increased complexity.

Inventive Principle:
Principle #35Parameter changes

2Adaptability or versatility

If diverse chemically modified siNA molecules are developed to expand therapeutic repertoire, then the adaptability improves, but the ease of manufacture decreases

Engineering Contradiction:
Improverepertoire of siNA moleculesVSAvoidmanufacturing of diverse siNA molecules
Core Design Contradiction:
Adaptability or versatilityVSEase of manufacture

Solution Approach 1:

The patent applies segmentation by dividing the siNA molecule into distinct modular components that can be independently modified. The sense and antisense strands can each receive different chemical modifications (2′-deoxy-2′-fluoro, 2′-O-alkyl, phosphorothioate), allowing systematic expansion of the therapeutic repertoire through combinatorial chemistry while maintaining standardized manufacturing protocols for each modification type, thus balancing adaptability with ease of manufacture.

Inventive Principle:
Principle #1Segmentation

3Reliability

If RNA molecules are used for RNAi therapeutics, then the effectiveness of gene expression modulation is improved, but the stability and compatibility with delivery systems worsen

Engineering Contradiction:
Improveeffectiveness of gene expression modulationVSAvoidstability of RNA molecules
Core Design Contradiction:
ReliabilityVSStability of the object's composition

Solution Approach 1:

The patent applies composite materials by creating chimeric siNA molecules that combine different nucleotide types (2′-deoxy-2′-fluoro nucleotides, 2′-O-alkyl nucleotides, phosphorothioate nucleotides) within a single molecule. This composite approach maintains the RNAi effectiveness of the original RNA structure while incorporating chemically modified components that provide enhanced stability and improved compatibility with various delivery systems, thereby resolving the contradiction between effectiveness and stability.

Inventive Principle:
Principle #40Composite materials

Applied Scientific Principles

This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.

Function Achieved in This Case

The modified siNA molecules provide effective gene expression modulation and therapeutic applications by enhancing stability and compatibility with various delivery systems, expanding the repertoire of RNAi-based treatments.

Implementation Method 1

RNA interference refers to the process of sequence-specific post-transcriptional gene silencing in animals mediated by short interfering RNAs (siRNAs)

Methodology Applied
Scientific EffectRNA interference:

Implementation Method 2

each N is independently a nucleotide which is unmodified or chemically modified

Methodology Applied
Scientific EffectChemical modification:

Data Source

PatentUS12516321B2RNA interference mediated inhibition of gene expression using short interfering nucleic acids (siNA)
Publication Date: 2026.01.06 SIRNA THERAPEUTICS INC
  • US12516321B2 patent drawing
  • US12516321B2 patent drawing
  • US12516321B2 patent drawing

AI summary

The present invention relates to compounds, compositions, and methods for the study, diagnosis, and treatment of traits, diseases and conditions that respond to the modulation of gene expression and/or activity, and/or modulate a gene expression pathway. Specifically, the invention relates to double-stranded nucleic acid molecules including small nucleic acid molecules, such as short interfering nucleic acid (siNA) molecules that are capable of mediating or that mediate RNA interference (RNAi) against target gene expression.