Nanocarrier Property Prediction for Payload-Independent Formulation Screening
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Solution Overview
Problem
Current nucleic acid delivery systems face challenges such as off-target effects, immune activation, difficulty in manufacturing at scale, and limited tissue targeting, particularly with viral vectors like AAVs, which are expensive and immunogenic, and non-viral vectors like LNPs are less suitable for targeting tissues other than the liver.
Innovation Solution
Training machine learning models to predict the transfection efficiency and structural properties of nanocarriers using physico-chemical properties of nanocarriers, such as peptide dendrimer/lipid hybrids, independent of the payload, to facilitate the design and selection of nanocarriers for various applications.
Engineering Contradictions & Design Principles
Engineering Contradiction Analysis
1Measurement precision
If machine learning models are trained to predict nanocarrier properties using payload-dependent features, then prediction accuracy for specific applications is improved, but the model loses universality and cannot predict properties across different payloads and applications
Solution Approach 1:
The patent extracts and removes payload-specific features from the prediction model inputs, retaining only nanocarrier formulation features (peptide sequence, lipid composition, ratios, molecular weights). This extraction allows the model to predict nanocarrier properties universally across different payloads and applications, resolving the contradiction between prediction accuracy for specific cases and general model universality.
Solution Approach 2:
The patent creates a universal prediction model that can accurately predict nanocarrier properties (transfection efficiency, cellular uptake, cytotoxicity) across multiple different payloads and applications without requiring payload-specific training. This multi-functionality approach allows a single model to serve diverse purposes, from gene therapy to cancer treatment, thereby achieving both accuracy and versatility.
2Reliability
If extensive experimental testing is performed to characterize nanocarrier formulations, then prediction accuracy and reliability are improved, but the time and resources required increase significantly
Solution Approach 1:
The patent performs preliminary computational characterization of nanocarrier formulations using machine learning predictions before conducting actual experimental testing. By pre-screening candidate formulations in silico to identify promising candidates with desired properties (high transfection efficiency, low cytotoxicity), the approach reduces the number of experiments needed, thereby saving time and resources while maintaining reliability through experimental validation of top candidates.
Solution Approach 2:
The patent creates a virtual copy of the nanocarrier system through computational models that replicate and predict the behavior of physical nanocarrier formulations. This in silico modeling allows extensive characterization and optimization without requiring proportional physical experimentation, significantly reducing the time and resources needed while maintaining predictive reliability through careful model training on experimental data.
3Adaptability or versatility
If the design space for nanocarrier formulation is explored exhaustively, then the optimal formulation is identified, but the cost and complexity of formulation and testing increase prohibitively
Solution Approach 1:
The patent applies preliminary computational screening using machine learning models to evaluate and rank potential nanocarrier formulations before actual preparation and testing. By pre-calculating predicted properties (transfection efficiency, cellular uptake, cytotoxicity) for multiple formulation variants, the approach identifies optimal candidates in silico, reducing the need to physically prepare and test all possible formulations, thereby lowering costs and complexity while maintaining thorough optimization.
Solution Approach 2:
The patent creates computational representations (digital twins) of nanocarrier formulations that can be extensively analyzed and compared without physical manufacturing. These virtual models allow exploration of the design space through simulation and prediction, enabling identification of optimal formulations through iterative optimization in silico before physical production, thereby reducing the actual formulation and testing complexity required.
Data Source
AI summary
This invention provides methods for predicting functional and/or structural properties of a nanocarrier that is a non-viral delivery system, along with related methods, systems and products. Functional properties of a nanocarrier may include transfection efficiency, structural properties of a nanocarrier characterise physico-chemical properties such as polydispersity, size and zeta potential. Methods include computational modelling such as machine learning and related statistical techniques.


