Neuron Image Segmentation via Dynamic Threshold Scoring

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Solution Overview

Problem

Traditional methods for automatic segmentation of neuroimages often incorrectly delete important voxels with weak signal intensity, leading to incorrect neuron structures, and are labor-intensive and time-consuming.

Innovation Solution

A method using high-dynamic-range thresholds that filters voxels based on a series of signal intensity thresholds, calculates structural importance scores, and sums them to determine which voxels to retain, ensuring critical branches are preserved and enabling efficient automatic segmentation.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Productivity

If traditional segmentation methods use a single intermediate signal intensity threshold to filter voxels, then processing speed is improved, but important voxels with weak signal intensity are incorrectly deleted resulting in incorrect neuron structures

Engineering Contradiction:
Improveprocessing speedVSAvoidneuron structure accuracy
Core Design Contradiction:
ProductivityVSReliability

Solution Approach 1:

The patent divides the single threshold filtering process into multiple segmentation stages with different thresholds. Instead of using one intermediate threshold, the method applies a series of thresholds from low to high, creating multiple filtered versions of the image. Each threshold captures different signal intensity ranges, ensuring that important voxels with weak signals are not lost while still maintaining processing efficiency through automated multi-stage filtering.

Inventive Principle:
Principle #1Segmentation

Solution Approach 2:

The patent changes the threshold parameter dynamically across multiple filtering stages. By varying the signal intensity threshold from low to high across different filtering passes, the system adapts to capture voxels with different signal strengths. This parameter change strategy allows important weak-signal voxels to be preserved in early stages while stronger signals are captured in later stages, resolving the contradiction between speed and accuracy.

Inventive Principle:
Principle #35Parameter changes

2Stability of the object's composition

If multiple images are captured and combined into a high-dynamic-range image to stabilize signal, then signal stability is improved, but imaging time is significantly increased and biological tissues are damaged

Engineering Contradiction:
Improvesignal stabilityVSAvoidimaging time
Core Design Contradiction:
Stability of the object's compositionVSLoss of time

Solution Approach 1:

The patent performs preliminary actions during image acquisition by capturing a single three-dimensional image with optimized imaging parameters. Instead of requiring multiple sequential captures, the method prepares the imaging process in advance with appropriate settings that maximize signal quality in a single pass, thereby stabilizing the signal without the time cost and tissue damage associated with repeated imaging.

Inventive Principle:
Principle #10Preliminary action

Solution Approach 2:

The patent creates multiple virtual copies of the single acquired image through computational processing. By applying different threshold filters to the same original image data, the system generates multiple filtered versions that simulate the effect of multiple captures with different exposure levels, achieving high-dynamic-range results without actually capturing multiple physical images.

Inventive Principle:
Principle #26Copying

3Measurement precision

If manual segmentation is used to correctly extract single neuron images, then segmentation accuracy is improved, but labor intensity and time consumption increase significantly

Engineering Contradiction:
Improvesegmentation accuracyVSAvoidprocessing efficiency
Core Design Contradiction:
Measurement precisionVSProductivity

Solution Approach 1:

The patent implements self-service automation where the segmentation system performs its own optimization through automated threshold selection and multi-stage filtering. The algorithm automatically identifies appropriate thresholds and applies filtering without human intervention, achieving accuracy comparable to manual segmentation while eliminating labor intensity. The system serves itself by using the image data to determine optimal processing parameters.

Inventive Principle:
Principle #25Self-service

Solution Approach 2:

The patent replaces the mechanical manual segmentation process with an automated computational system. Instead of manual inspection and tracing by researchers, the invention uses algorithmic image processing with automated threshold-based filtering to extract neuron structures, substituting human labor with machine-based image analysis that maintains accuracy while dramatically improving processing efficiency.

Inventive Principle:
Principle #28Mechanics substitution (Replace mechanical system)

Data Source

PatentUS10002425B2Method of segmenting single neuron images with high-dynamic-range thresholds and computer readable storage medium thereof
Publication Date: 2018.06.19 NATIONAL TSING HUA UNIVERSITY
  • US10002425B2 patent drawing
  • US10002425B2 patent drawing
  • US10002425B2 patent drawing

AI summary

The method of segmenting single neuron images with high-dynamic-range thresholds of the present invention includes (a) preparing a biological tissue sample containing neurons and performing imaging to this sample to obtain a three-dimensional raw neuroimage; (b) deleting voxels in the three-dimensional raw neuroimage with signal intensities below a first signal intensity threshold to obtain a first thresholded image; (c) tracing the first thresholded image to obtain a first traced image; (d) calculating a structural importance score of every voxel in the first traced image to obtain a first structural importance score of every voxel; (e) gradually increasing the signal intensity threshold and repeating (b), (c) and (d) n−1 times; (f) summing up all the n structural importance scores of every voxel; (g) deleting voxels with summed structural importance score smaller than a pre-determined value from the raw image to obtain the segmented single neuron.