Site-specific, kinetically inert conjugation of labels and/or carriers to target molecules such as his-tagged proteins via metal complex reagents

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Solution Overview

Problem

Existing methods for attaching labels and/or carriers to target molecules, such as proteins, suffer from lack of site-specificity, batch variability, and instability due to harsh reaction conditions, which can affect protein function and stability.

Innovation Solution

A complex comprising a metal cation, nitrate as a metal cation ligand, and a metal cation chelating domain with a chelating ligand and a label and/or carrier, allowing direct formation of a kinetically inert complex without oxidation steps, facilitating fast and efficient attachment.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Productivity

If classical labeling methods using reactive groups (NHS esters, maleimides) are used, then labeling efficiency is improved, but site-specificity deteriorates and batch variability increases

Engineering Contradiction:
Improvelabeling efficiencyVSAvoidsite-specificity
Core Design Contradiction:
ProductivityVSManufacturing precision

Solution Approach 1:

The patent introduces a localized reactive site through a peptide tag (e.g., GRSP) that is specifically positioned at a defined location on the protein. This localized tag contains unique amino acid sequences that form specific metal coordination chemistry, creating a local quality distinction between the tag and the rest of the protein. The metal complex reagent then reacts specifically with this localized tag rather than with multiple reactive sites distributed throughout the protein, thereby achieving site-specific labeling while maintaining high labeling efficiency.

Inventive Principle:
Principle #3Local quality

Solution Approach 2:

The patent employs a metal complex reagent as an intermediary between the peptide tag and the label. The metal complex (comprising a metal ion, chelating ligand, and leaving group) serves as a mediator that facilitates the transfer of the label to the peptide tag through coordination chemistry. This intermediary mechanism provides controlled and specific interaction at the tag location, avoiding non-specific reactions with other protein residues while maintaining efficient label attachment.

Inventive Principle:
Principle #24Intermediary (Mediator)

2Manufacturing precision

If enzymatic methods (biotin ligase, sortase) are used for site-specific conjugation, then site-specificity is improved, but process complexity and time consumption increase

Engineering Contradiction:
Improvesite-specificityVSAvoidprocess complexity
Core Design Contradiction:
Manufacturing precisionVSDevice complexity

Solution Approach 1:

The patent replaces enzymatic catalysis with a chemical coordination mechanism. Instead of using enzymes such as biotin ligase or sortase that require complex biological systems, cofactors, and controlled reaction conditions, the invention uses a metal complex reagent that attaches labels through coordination chemistry. This substitution eliminates the need for enzymatic machinery while achieving comparable or superior site-specificity through the defined metal coordination geometry and ligand exchange mechanisms.

Inventive Principle:
Principle #28Mechanics substitution (Replace mechanical system)

Solution Approach 2:

The patent changes the fundamental reaction parameters from enzymatic catalysis to metal coordination chemistry. By adjusting metal ion type, oxidation state, chelating ligand structure, and leaving group properties, the reaction can be optimized for site-specificity without requiring biological systems. This parameter adjustment allows the reaction to proceed under simpler, more controlled chemical conditions rather than requiring enzymatic machinery.

Inventive Principle:
Principle #35Parameter changes

3Stability of the object's composition

If oxidation steps are used to form kinetically inert metal complexes, then complex stability is improved, but harmful effects on oxidation-sensitive molecules occur

Engineering Contradiction:
Improvecomplex stabilityVSAvoidoxidation damage
Core Design Contradiction:
Stability of the object's compositionVSObject-affected harmful factors

Solution Approach 1:

The patent converts the potential harm of oxidation into a benefit by using oxidation-resistant metal ions (such as Co3+, Pt4+) that inherently form kinetically inert complexes without requiring oxidative steps. The metal ions are selected specifically for their ability to form stable, inert complexes through their inherent electronic structure and coordination chemistry, transforming what would normally be a harmful oxidation process into a beneficial, oxidation-free complex formation mechanism that protects oxidation-sensitive molecules.

Inventive Principle:
Principle #22Blessing in disguise (Convert harm into benefit)

Solution Approach 2:

The patent creates an inert chemical environment by using metal ions that form kinetically inert complexes, preventing further chemical reactions at the metal center. The coordination sphere of the metal ion becomes inert, blocking access to the label and preventing degradation pathways. This inert environment is achieved through the metal's electronic structure and coordination geometry rather than through physical inert atmosphere, allowing stable complex formation without oxidative damage.

Inventive Principle:
Principle #39Inert atmosphere (Inert environment)

4Stability of the object's composition

If multi-step preparation methods are used to form kinetically inert complexes, then complex stability is improved, but productivity deteriorates

Engineering Contradiction:
Improvecomplex stabilityVSAvoidlabeling speed
Core Design Contradiction:
Stability of the object's compositionVSProductivity

Solution Approach 1:

The patent performs preliminary action by pre-assembling the metal complex reagent with the chelating ligand and leaving group in a stable, pre-formed complex before it encounters the peptide tag. This pre-assembled reagent is designed to undergo rapid ligand exchange at the metal center when it binds to the peptide tag, eliminating the need for multi-step in-situ assembly. The preliminary formation of the metal-chelate complex ensures stability while the pre-positioned leaving group enables fast exchange kinetics, achieving both stability and high productivity.

Inventive Principle:
Principle #10Preliminary action

Applied Scientific Principles

This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.

Function Achieved in This Case

The complex enables stable and efficient attachment of labels and/or carriers to target molecules without interfering with their function, reducing the need for cumbersome oxidation steps and enhancing the applicability to oxidation-sensitive molecules.

Implementation Method 1

a complex comprising a metal cation coordinating (i) nitrate as a metal cation ligand and (ii) a metal cation chelating domain comprising a chelating ligand and a label and/or carrier

Methodology Applied
Scientific EffectCoordination chemistry: Chemical Bonding

Implementation Method 2

The attachment of the label or carrier via the complex of the invention involves the replacement of the metal cation ligand with a coordinating group of the target molecule

Methodology Applied
Scientific EffectLigand exchange: Chemical Bonding

Data Source

PatentUS12497423B2Site-specific, kinetically inert conjugation of labels and/or carriers to target molecules such as his-tagged proteins via metal complex reagents
Publication Date: 2025.12.16 UNIVERSITY OF HEIDELBERG
  • US12497423B2 patent drawing
  • US12497423B2 patent drawing
  • US12497423B2 patent drawing

AI summary

The present invention relates to means and methods for conjugating/attaching target molecules such as proteins to a label and/or carrier. Specifically, the present invention provides a complex comprising a metal cation coordinating (i) nitrate as a metal cation ligand and (ii) a metal cation chelating domain comprising a chelating ligand and a label and/or carrier. This complex can be used for attaching a label and/or a carrier to a target molecule, preferably a protein. The attachment of the label or carrier via the complex of the invention involves the replacement of the metal cation ligand with a coordinating group of the target molecule so that a product complex with the target molecule as primary ligand in the coordination sphere of the metal cation is formed. Accordingly, the present invention also provides for uses and methods involving the attachment of a label and/or carrier to a target molecule. Also provided are the products obtained by the labeling and or carrier-attaching methods of the invention and uses thereof. The invention further relates to methods for producing the complex of the invention and kits comprising the components for producing the complex of the invention.