Nitroreductase Enzymatic Substrates for Heterogeneous Media Detection

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Solution Overview

Problem

Current methods for detecting nitroreductase activity in microorganisms are not sensitive enough, especially in heterogeneous media, and existing substrates are not well-suited for differentiation and visualization in gel media or for monitoring pH variations.

Innovation Solution

Development of novel enzymatic substrates that produce a localized color or fluorescence upon reduction, allowing for specific detection and identification of nitroreductase activity and pH variations, suitable for use in gel media and flow cytometry, with compounds like 2-(4′-nitrostyryl)benzothiazole and its salts.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Measurement precision

If indirect methods are used to detect nitroreductase activity by monitoring substrate disappearance, then detection can be performed, but the sensitivity is insufficient and it is not suitable for heterogeneous media

Engineering Contradiction:
Improvedetection sensitivityVSAvoidsuitability for heterogeneous media
Core Design Contradiction:
Measurement precisionVSEase of operation

Solution Approach 1:

The patent employs chromogenic substrates containing nitroaromatic groups that undergo enzymatic reduction to produce colored products. The reduction of the nitro group (NO2) to amino group (NH2) results in a visible color change from yellow to colorless or different hues, enabling direct visual and instrumental detection of nitroreductase activity in heterogeneous media with high sensitivity.

Inventive Principle:
Principle #32Color changes

Solution Approach 2:

The patent replaces indirect detection methods (monitoring substrate disappearance) with direct detection methods (monitoring product formation through colorimetry or fluorimetry). This substitution of detection mechanism enables simultaneous achievement of high sensitivity and suitability for heterogeneous media by directly observing the enzymatic reaction product.

Inventive Principle:
Principle #28Mechanics substitution (Replace mechanical system)

2Measurement precision

If nitroaromatic substrates are used for detection, then nitroreductase activity can be detected, but the product diffuses in the reaction medium preventing localized visualization

Engineering Contradiction:
Improvedetection capabilityVSAvoidproduct localization
Core Design Contradiction:
Measurement precisionVSShape

Solution Approach 1:

The patent uses a gel matrix (such as agarose or polyacrylamide) as an intermediary medium that physically traps the colored or fluorescent reduction products at the site of enzymatic activity. This gel intermediary prevents diffusion of the reaction products while allowing free movement of enzymes and substrates, thereby enabling localized visualization of nitroreductase activity zones.

Inventive Principle:
Principle #24Intermediary (Mediator)

Solution Approach 2:

The patent creates local quality differences by incorporating the chromogenic or fluorogenic nitroaromatic substrates into a gel matrix, allowing the reaction products to remain localized at specific sites where nitroreductase activity occurs. This enables spatial resolution and visualization of enzymatic activity patterns within the gel medium.

Inventive Principle:
Principle #3Local quality

3Adaptability or versatility

If existing substrates are used, then nitroreductase activity detection is possible, but they cannot simultaneously detect pH variations

Engineering Contradiction:
Improvemulti-parameter detectionVSAvoidsubstrate design
Core Design Contradiction:
Adaptability or versatilityVSDevice complexity

Solution Approach 1:

The patent designs dual-function substrates that simultaneously serve as both nitroreductase substrates and pH indicators. The nitroaromatic substrates are coupled with pH-sensitive chromophores or fluorophores that change their spectral properties in response to pH variations, enabling concurrent detection of both nitroreductase activity and pH changes using a single substrate system.

Inventive Principle:
Principle #6Universality (Multi-functionality)

Solution Approach 2:

The patent merges the nitroreductase substrate function with the pH indicator function into a single molecular structure. The nitroaromatic group provides the substrate functionality for enzymatic reduction, while attached pH-sensitive groups provide the pH indication capability, creating a multifunctional probe that detects both parameters simultaneously.

Inventive Principle:
Principle #5Merging (Combining)

Applied Scientific Principles

This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.

Function Achieved in This Case

Enables sensitive and specific detection of nitroreductase activity and pH variations, allowing for the differentiation of microorganisms and visualization of nitroreductase activity without diffusion of the product in the reaction medium, facilitating the identification and counting of cells expressing this activity.

Implementation Method 1

a step of enzymatic reduction producing a physicochemical signal

Methodology Applied
Scientific EffectEnzymatic reduction: Enzyme

Implementation Method 2

the product of the enzymatic metabolism may be chromogenic or fluorescent

Methodology Applied
Scientific EffectChromogenic reaction:

Implementation Method 3

This type of nitro-aromatic compound is capable of producing, after reduction, a very fluorescent compound which is therefore easily detectable

Methodology Applied
Scientific EffectFluorescence: Fluorescence

Data Source

PatentUS8883437B2Nitroreductase enzymatic substrates
Publication Date: 2014.11.11 BIOMERIEUX SA
  • US8883437B2 patent drawing
  • US8883437B2 patent drawing
  • US8883437B2 patent drawing

AI summary

The invention relates to the use of a compound having formula (I) as an enzymatic substrate for the detection of a nitroreductase activity, wherein: W1, W2, W3 and W4 are independently H, Br, Cl, F, I, alkyl, alkoxy, thiomethyl, perfluoroalkyl, nitro, cyano, carboxyl (including the esters or amides thereof) or any combination of same; n=0, 1 or 2; X is NR, CZ5Z6, S or O, R being H, alkyl, aralkyl, aryl, alkanoic or alkylsulphonic, Z5 and Z6 being an alkyl; Y is N or N+R, R being alkyl, aralkyl, aryl, alkanoic or alkylsulphonic; Z1, Z2, Z3 and Z4 are independently H, Br, Cl, F, I, alkyl, aryl, alkoxy, perfluoroalkyl, nitro, cyano, carboxyl, sulphonyl, including the sulphonyl or carboxyl amides or esters thereof, and the salts of same.