Nonnegative Matrix Factorization for Spectroscopic Unmixing

Resolve Bottlenecks,
Find Innovative Solutions
Generate Solutions

Solution Overview

Problem

Existing spectrographic data processing techniques for multicomponent samples, such as turbid and heterogeneous samples, fail to accurately determine component concentrations due to nonlinear responses and assumptions of linear signal strength, and do not account for unknown components or heteroscedastic models.

Innovation Solution

The method employs nonnegative matrix factorization to iteratively compute component spectra and pathlength values, using the Hadamard product to approximate optical absorbance data, allowing for the estimation of component concentrations and spectra in multicomponent samples, even with absorptive interferents and scattering effects.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Measurement precision

If traditional spectrographic data processing techniques (OLS or PLS regression) are used, then the processing method is simple and straightforward, but the concentration estimates become inaccurate for turbid and heterogeneous samples due to nonlinear responses

Engineering Contradiction:
Improveconcentration estimation accuracyVSAvoiddata processing complexity
Core Design Contradiction:
Measurement precisionVSDevice complexity

Solution Approach 1:

The patent transforms the spectrographic data processing from traditional linear regression parameters to nonnegative matrix factorization parameters, fundamentally changing the mathematical model from linear to nonlinear while maintaining physical interpretability through nonnegativity constraints on concentrations and pathlengths

Inventive Principle:
Principle #35Parameter changes

Solution Approach 2:

The patent introduces an intermediary pathlength matrix L that accounts for scattering effects and heterogeneous sample structures, acting as a mediator between the observed absorbance data and the true component concentrations, thereby resolving the nonlinear response problem

Inventive Principle:
Principle #24Intermediary (Mediator)

2Reliability

If linear signal strength assumptions are made, then the calculation process is simplified, but the results fail to account for scattering effects and path changes in turbid samples

Engineering Contradiction:
Improveaccounting for scattering effectsVSAvoidmodel complexity
Core Design Contradiction:
ReliabilityVSDevice complexity

Solution Approach 1:

The pathlength matrix L serves as an intermediary that captures scattering effects and variable optical paths in turbid samples, allowing the model to account for these complex physical phenomena without requiring direct measurement of scattering parameters

Inventive Principle:
Principle #24Intermediary (Mediator)

Solution Approach 2:

The patent adds a new dimension to the analysis by introducing the pathlength matrix L, which provides an additional degree of freedom to account for scattering effects and heterogeneous sample structures beyond the traditional concentration-only approach

Inventive Principle:
Principle #17Another dimension (Dimensionality change)

3Adaptability or versatility

If conventional regression techniques are used, then the method assumes known component spectra and linear additivity, but it cannot identify or account for unknown components in the sample

Engineering Contradiction:
Improveability to handle unknown componentsVSAvoidalgorithm complexity
Core Design Contradiction:
Adaptability or versatilityVSDevice complexity

Solution Approach 1:

The patent employs iterative optimization algorithms that dynamically adjust the component spectra and concentration estimates until convergence, allowing the system to adaptively discover unknown components rather than requiring predetermined spectral libraries

Inventive Principle:
Principle #15Dynamics

Solution Approach 2:

The nonnegative matrix factorization algorithm is self-sufficient in that it can identify both known and unknown components without requiring external reference spectra, as the component spectra are derived directly from the data through the factorization process

Inventive Principle:
Principle #25Self-service

4Measurement precision

If traditional techniques are applied to heterogeneous samples, then the linear Beer's Law model is used, but the effective absorption shows nonlinear response to absorption coefficient changes

Engineering Contradiction:
Improveabsorption measurement accuracyVSAvoidprocessing method complexity
Core Design Contradiction:
Measurement precisionVSDevice complexity

Solution Approach 1:

The patent changes the fundamental parameter relationship from linear Beer's Law to a nonlinear multiplicative model involving the Hadamard product of the pathlength matrix and concentration-spectra product, accurately capturing the nonlinear absorption behavior in heterogeneous samples

Inventive Principle:
Principle #35Parameter changes

Applied Scientific Principles

This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.

Function Achieved in This Case

This approach provides accurate and positive concentration estimates, suitable for chemometrics and optical sensing, effectively addressing the limitations of traditional techniques like OLS and PLS regression by accounting for nonlinear responses and unknown components.

Implementation Method 1

iteratively computing values for component spectra using nonnegative matrix factorization. The values for component spectra may be iteratively computed until optical absorbance data is approximately equal to a Hadamard product of a pathlength matrix and a matrix product of a concentration matrix and a component spectra matrix

Methodology Applied
Scientific EffectNonnegative matrix factorization:

Implementation Method 2

optical absorbance data is approximately equal to a Hadamard product of a pathlength matrix and a matrix product of a concentration matrix and a component spectra matrix

Methodology Applied
Scientific EffectHadamard product:

Data Source

PatentUS8140272B2System and method for unmixing spectroscopic observations with nonnegative matrix factorization
Publication Date: 2012.03.20 COVIDIEN LP
  • US8140272B2 patent drawing
  • US8140272B2 patent drawing
  • US8140272B2 patent drawing

AI summary

Systems and methods for unmixing spectroscopic data using nonnegative matrix factorization during spectrographic data processing are provided according to various embodiments. In an embodiment, a method of processing spectrographic data may include receiving optical absorbance data associated with a sample and iteratively computing values for component spectra using nonnegative matrix factorization. The values for component spectra may be iteratively computed until optical absorbance data is approximately equal to a Hadamard product of a pathlength matrix and a matrix product of a concentration matrix and a component spectra matrix. The method may also include iteratively computing values for pathlength using nonnegative matrix factorization, in which pathlength values may be iteratively computed until optical absorbance data is approximately equal to a Hadamard product of the pathlength matrix and the matrix product of the concentration matrix and the component spectra matrix.