Oligomeric Compounds Modulating FMR1 Expression

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Solution Overview

Problem

Current treatments for fragile X-spectrum disorders, including Fragile X Syndrome, Fragile X-Associated Tremor/Ataxia Syndrome, and Fragile-X-Associated Premature Ovarian Failure, lack effective options to address symptoms and halt disease progression.

Innovation Solution

Development of oligomeric compounds, specifically modified oligonucleotides, to reduce Repeat Associated Non-AUG (RAN) translation products and increase FMR1 RNA and FMRP synthesis, thereby ameliorating symptoms such as intellectual disability, physical abnormalities, anxiety, and neuronal death.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Reliability

If current treatments are used for fragile X-spectrum disorders, then no effective treatment options are available, but the disease progresses without intervention

Engineering Contradiction:
Improvetreatment effectivenessVSAvoiddisease progression
Core Design Contradiction:
ReliabilityVSProductivity

Solution Approach 1:

The patent extracts and targets the harmful RAN translation products (polyglycine, polyalanine, polyarginine proteins) produced from CGG repeats in the FMR1 gene. By specifically eliminating these toxic proteins through oligomeric compounds, the treatment addresses the root cause of neuronal damage and disease progression in fragile X-spectrum disorders.

Inventive Principle:
Principle #2Taking out (Extraction)

Solution Approach 2:

The patent employs oligomeric compounds that modify the expression parameters of FMR1 RNA and FMRP synthesis. These compounds change the translational parameters by suppressing RAN translation while enhancing canonical AUG-initiated translation, thereby altering the protein production profile to be beneficial for treating fragile X-spectrum disorders.

Inventive Principle:
Principle #35Parameter changes

2Quantity of substance

If CGG repeats are present in the FMR1 locus, then FMR1 transcription occurs, but RAN translation produces harmful proteins

Engineering Contradiction:
ImproveFMR1 transcriptionVSAvoidRAN translation products
Core Design Contradiction:
Quantity of substanceVSObject-generated harmful factors

Solution Approach 1:

The patent converts the harmful effect of CGG repeats into a beneficial outcome by selectively suppressing RAN translation while preserving canonical translation. The oligomeric compounds enable the cell to distinguish between harmful non-AUG initiated translation and beneficial AUG-initiated translation, thereby converting the previously harmful repeat structure into a manageable element that can be therapeutically addressed.

Inventive Principle:
Principle #22Blessing in disguise (Convert harm into benefit)

3Reliability

If FMRP synthesis is impaired, then neuronal function is compromised, but current treatments cannot restore it

Engineering Contradiction:
Improveneuronal functionVSAvoidtreatment availability
Core Design Contradiction:
ReliabilityVSEase of manufacture

Solution Approach 1:

The patent introduces oligomeric compounds as intermediary agents that mediate between the FMR1 gene and the cellular translation machinery. These compounds act as modulators that enhance FMRP synthesis by suppressing RAN translation and promoting canonical translation pathways, thereby restoring neuronal function without requiring direct gene therapy or complex interventions.

Inventive Principle:
Principle #24Intermediary (Mediator)

Data Source

PatentUS20240175021A1Methods for modulating FMR1 expression
Publication Date: 2024.05.30 IONIS PHARMACEUTICALS INC
  • US20240175021A1 patent drawing
  • US20240175021A1 patent drawing
  • US20240175021A1 patent drawing

AI summary

Provided are methods for increasing the amount or activity of FMR1 RNA, and in certain instances of increasing the amount of FMRP protein, in an animal. Such methods are useful to prevent or ameliorate at least one symptom of a Fragile X-Spectrum disorder. Such Fragile X-Spectrum disorders include FXS, FXTAS, and FXPOI.