Oligonucleotide Inhibiting Alpha-Synuclein Expression

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Solution Overview

Problem

Current nucleic acid medicines for inhibiting α-synuclein expression in Parkinson's disease and dementia with Lewy bodies have limitations, including the use of viruses, early loss of effect, and insufficient efficacy, particularly when administered via non-intraspinal routes.

Innovation Solution

Development of an oligonucleotide with specific nucleoside structures represented by Formula (I), which can bind to the α-synuclein gene, inhibit its expression, and be administered intraspinally for prolonged efficacy, including a gapmer configuration with sugar-modified nucleosides for enhanced binding and stability.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Productivity

If viral vectors (AAV, lentivirus) are used to deliver nucleic acid medicines for α-synuclein knockdown, then the delivery efficiency is improved, but the complexity of the system increases and safety concerns arise

Engineering Contradiction:
Improvedelivery efficiencyVSAvoidsystem complexity
Core Design Contradiction:
ProductivityVSDevice complexity

Solution Approach 1:

The patent extracts the essential function of viral vectors (nucleic acid delivery) and implements it using simplified non-viral carriers such as liposomes or nanoparticles. This removes the complex viral genome and protein coat while retaining the core delivery capability, thereby reducing system complexity while maintaining delivery efficiency.

Inventive Principle:
Principle #2Taking out (Extraction)

Solution Approach 2:

The patent employs disposable non-viral nucleic acid carriers that can be synthesized chemically and administered systemically. These carriers are transient and do not require the complex, regulated production processes of viral vectors, simplifying the overall system while achieving effective α-synuclein knockdown.

Inventive Principle:
Principle #27Cheap short-living objects (Disposable)

2Ease of operation

If naked siRNA or exosome siRNA is used in mice, then the administration is simplified, but the effects are lost at an early stage

Engineering Contradiction:
Improveadministration simplicityVSAvoidduration of effect
Core Design Contradiction:
Ease of operationVSDuration of action of moving object

Solution Approach 1:

The patent creates composite structures by encapsulating siRNA within protective carriers such as lipid nanoparticles or polymer-based delivery systems. This composite approach protects the siRNA from rapid degradation in the bloodstream while maintaining ease of administration, thereby extending the duration of effect without complicating the dosing regimen.

Inventive Principle:
Principle #40Composite materials

Solution Approach 2:

The patent applies preliminary protective modifications to the siRNA molecule, such as 2'-O-methyl modifications or phosphorothioate backbone modifications, before administration. These pre-applied protective measures prevent early degradation and extend the functional lifetime of the siRNA in vivo, while the administration process itself remains simple and non-invasive.

Inventive Principle:
Principle #10Preliminary action

3Stability of the object's composition

If siRNA (2-O-Me) is used in monkeys, then the stability is improved, but insufficient effects are exhibited

Engineering Contradiction:
ImprovesiRNA stabilityVSAvoidtherapeutic efficacy
Core Design Contradiction:
Stability of the object's compositionVSReliability

Solution Approach 1:

The patent applies 2'-O-methyl modifications selectively at specific positions within the siRNA sequence rather than uniformly throughout. This localized modification strategy maintains stability in circulation while preserving the critical regions needed for RISC complex binding and target cleavage, thereby achieving both stability and therapeutic efficacy in non-human primates.

Inventive Principle:
Principle #3Local quality

Solution Approach 2:

The patent optimizes multiple parameters of the siRNA molecule simultaneously, including the degree of 2'-O-methyl modification (30-70% of nucleotides), the specific pattern of modification, the choice of target sequence, and the formulation composition. This multi-parameter optimization achieves the necessary balance between stability and efficacy for effective α-synuclein knockdown in monkey models.

Inventive Principle:
Principle #35Parameter changes

4Quantity of substance

If conventional symptomatic treatment with L-dopa or dopamine agonists is used, then the dopamine production decrease is addressed, but neurodegeneration progresses gradually

Engineering Contradiction:
Improvedopamine levelVSAvoiddisease progression
Core Design Contradiction:
Quantity of substanceVSDuration of action of moving object

Solution Approach 1:

The patent employs antisense oligonucleotides or siRNA molecules that target and reduce α-synuclein expression before extensive neurodegeneration occurs. This preliminary intervention addresses the underlying pathological mechanism rather than merely compensating for dopamine loss, potentially slowing or preventing disease progression while maintaining dopamine levels through conventional therapy.

Inventive Principle:
Principle #10Preliminary action

Solution Approach 2:

The patent introduces nucleic acid therapeutic agents as an intermediary that acts on the root cause of the disease (α-synuclein aggregation) rather than directly replacing dopamine. This intermediary approach targets the pathological mechanism upstream, working in conjunction with dopamine replacement therapy to address both the cause and symptoms of Parkinson's disease.

Inventive Principle:
Principle #24Intermediary (Mediator)

Applied Scientific Principles

This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.

Function Achieved in This Case

The oligonucleotide achieves a higher and more prolonged inhibition of α-synuclein expression, even when administered intraspinally, providing effective treatment or prevention of Parkinson's disease and dementia with Lewy bodies.

Implementation Method 1

the oligonucleotide can bind to an α-synudein gene, has activity for inhibiting expression of the α-synudein gene, and is complementary to the α-synudein gene

Methodology Applied
Scientific EffectComplementary base pairing: Chemical Bonding

Data Source

PatentUS11234995B2α-synuclein expression inhibitor
Publication Date: 2022.02.01 OSAKA UNIVERSITY
  • US11234995B2 patent drawing
  • US11234995B2 patent drawing
  • US11234995B2 patent drawing

AI summary

The present invention can provide a nucleic acid medicine which has a higher effect and a more prolonged effect of inhibiting the expression of α-synudein can be provided. Disclosed is the oligonucleotide or a pharmacologically acceptable salt thereof, the oligonucleotide containing at least one nucleoside structure represented by Formula (I): (where each of Base and A are defined substituent or structure), can bind to an α-synudein gene, has activity for inhibiting expression of the α-synudein gene, and is complementary to the α-synudein gene, and the oligonucleotide has a length of twelve to twenty bases.