Polarization-Split Pixel Sensing for Multiplex Analyte Detection

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Solution Overview

Problem

Existing sensing technologies face challenges in efficiently distinguishing and identifying multiple analytes in multiplex assays and DNA sequencing processes due to overlapping fluorescence signals and interference from different polarizations of light.

Innovation Solution

The apparatus employs a pixel sensor with first and second reaction sites configured to selectively transmit light of different polarities, allowing for the detection of analytes based on their unique emission signals under specific polarized excitation, thereby enhancing the identification of multiple analytes.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Measurement precision

If conventional light sensing is used to detect multiple analytes, then the detection process can be performed, but signal interference from overlapping fluorescence and different polarizations reduces measurement precision

Engineering Contradiction:
Improveanalyte identification accuracyVSAvoidsignal interference
Core Design Contradiction:
Measurement precisionVSObject-affected harmful factors

Solution Approach 1:

The patent divides the detection process into separate polarization channels by using polarizing beam splitters and quarter-wave plates. Each polarization state (right-circular and left-circular) is directed to separate reaction sites, allowing independent detection of different analytes. This segmentation eliminates signal interference by spatially separating the detection paths for different analytes.

Inventive Principle:
Principle #1Segmentation

Solution Approach 2:

The patent introduces optical intermediaries including polarizing beam splitters, quarter-wave plates, and half-wave plates to manipulate and separate light polarizations. These intermediary optical components transform the incident light into distinct polarization paths that can be independently detected, thereby resolving the signal interference problem.

Inventive Principle:
Principle #24Intermediary (Mediator)

2Productivity

If multiple analytes are detected simultaneously in multiplex assays, then throughput increases, but distinguishing overlapping fluorescence signals becomes more difficult

Engineering Contradiction:
Improvedetection throughputVSAvoidsignal distinction difficulty
Core Design Contradiction:
ProductivityVSDifficulty of detecting and measuring

Solution Approach 1:

The patent assigns different local optical properties to different reaction sites by configuring specific polarization-selective optical paths for each site. Each reaction site is optimized to detect a specific polarization state, creating local quality differences that enable clear distinction of multiple analytes even when they emit overlapping fluorescence signals.

Inventive Principle:
Principle #3Local quality

Solution Approach 2:

The patent changes the polarization parameter of the excitation light to differentiate between analytes. By using right-circular polarized light for one analyte and left-circular polarized light for another, the system creates distinct detection parameters that allow simultaneous multiplex detection without signal overlap, thereby increasing throughput while maintaining ease of measurement.

Inventive Principle:
Principle #35Parameter changes

3Measurement precision

If polarization-based separation is implemented, then signal-to-noise ratio improves, but device complexity increases due to additional optical components

Engineering Contradiction:
Improvesignal-to-noise ratioVSAvoidoptical component quantity
Core Design Contradiction:
Measurement precisionVSDevice complexity

Solution Approach 1:

The patent merges multiple detection functions into a single integrated optical system. The polarizing beam splitter simultaneously directs different polarization states to different reaction sites, and the quarter-wave plates are positioned to perform both polarization transformation and signal separation functions. This merging reduces the overall number of separate components needed compared to conventional multi-detector systems.

Inventive Principle:
Principle #5Merging (Combining)

Solution Approach 2:

The patent designs optical components with multiple functions: the polarizing beam splitter serves both to separate polarizations and to direct light paths; the quarter-wave plates simultaneously transform polarization states and enable circular dichroism detection; the half-wave plates provide both polarization rotation and signal modulation. This multi-functionality reduces device complexity by eliminating the need for separate components for each function.

Inventive Principle:
Principle #6Universality (Multi-functionality)

Applied Scientific Principles

This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.

Function Achieved in This Case

This approach improves the accuracy and efficiency of identifying multiple analytes by reducing signal interference and enhancing the signal-to-noise ratio, enabling higher throughput and lower cost in sequencing and multiplex assays.

Implementation Method 1

the first reaction site is configured to selectively transmit light of a first polarity; and wherein the second reaction site is configured to selectively transmit light of a second polarity

Methodology Applied
Scientific EffectPolarization: Polarisation

Implementation Method 2

detecting, using a pixel sensor of a plurality of pixels sensors, a read signal, the read signal being dependent on a first cluster signal emitted from a first reaction site

Methodology Applied
Scientific EffectPhotoelectric Effect: Photoelectric Effect

Data Source

PatentUS20250305956A1Polarization based sensing
Publication Date: 2025.10.02 ILLUMINA INC
  • US20250305956A1 patent drawing
  • US20250305956A1 patent drawing
  • US20250305956A1 patent drawing

AI summary

There is set forth herein, in one example, an apparatus. The apparatus can comprise, for example: a first reaction site and a second reaction site associated to a common pixel, wherein the pixel comprises a pixel sensor.