Amino Acid Linker Structures for Protease-Stable Therapeutic Conjugates

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Solution Overview

Problem

Existing therapeutic conjugates face challenges with high toxicity and low efficacy due to the use of conventional linkers, which hinder their clinical application despite the potential of carrier molecules to enhance intracellular uptake.

Innovation Solution

The introduction of specific linkers with defined structures, such as Formula (I), which reduce toxicity by stabilizing the carrier-therapeutic conjugate orientation and protecting against protease cleavage, allowing for reduced toxicity and maintained efficacy.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Reliability

If conventional linkers are used to connect carrier molecules to therapeutic molecules, then the conjugate structure is formed, but toxicity increases and efficacy decreases

Engineering Contradiction:
Improvetherapeutic efficacyVSAvoidtoxicity
Core Design Contradiction:
ReliabilityVSObject-affected harmful factors

Solution Approach 1:

The patent applies parameter changes by modifying the linker structure from conventional designs to specific Formula (I) configurations. This involves changing the chemical parameters of the linker including the selection of T1 and T2 groups (amino or carbonyl), the value of n (1, 2, or 3), and the substitution patterns on the central carbon. These parameter modifications result in linkers that reduce toxicity while preserving therapeutic efficacy, directly resolving the contradiction between reliability and harmful factors.

Inventive Principle:
Principle #35Parameter changes

Solution Approach 2:

The patent employs composite materials by creating a hybrid linker structure that combines multiple functional elements: amide or ester bonding capabilities (T1 and T2), flexible alkyl chains with variable substitution (R1 and R2 groups), and specific geometric configurations. This composite linker design integrates the benefits of different chemical moieties to achieve both low toxicity and high therapeutic efficacy, resolving the contradiction between these opposing requirements.

Inventive Principle:
Principle #40Composite materials

2Ease of operation

If the carrier molecule is optimized to enhance intracellular uptake, then cellular penetration improves, but toxicity increases

Engineering Contradiction:
Improveintracellular uptakeVSAvoidtoxicity
Core Design Contradiction:
Ease of operationVSObject-affected harmful factors

Solution Approach 1:

The patent applies the intermediary principle by introducing the specially designed linker as a mediating component between the carrier molecule and therapeutic molecule. The linker acts as a buffer or intermediary element that allows the carrier to maintain its cell-penetrating properties while preventing the toxic effects from transferring to the therapeutic payload. This intermediary structure resolves the contradiction by decoupling the uptake-enhancing function from the toxicity-generating function.

Inventive Principle:
Principle #24Intermediary (Mediator)

Data Source

PatentUS12465646B2Linkers
Publication Date: 2025.11.11 OXFORD UNIVERSITY INNOVATION LTD
  • US12465646B2 patent drawing
  • US12465646B2 patent drawing
  • US12465646B2 patent drawing

AI summary

The present invention relates to linkers for connecting a carrier molecule to a therapeutic molecule to form a conjugate, in particular linkers formed of amino acids such as glutamic acid, succinic acid, and gamma-aminobutyric acid. The present invention further relates to a conjugate comprising a linker of the invention, and the use of the conjugate in the treatment of various diseases.