Protein Secretion Signals and Chaperones for High-Yield Expression

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Solution Overview

Problem

Existing host cells are not capable of efficiently producing and secreting proteins such as bovine lactoferrin, bovine lactoglobulin, or ovalbumin at high levels.

Innovation Solution

The use of genetically modified host cells with novel secretion signals and polynucleotides encoding CRT and PDIA3 proteins to enhance protein production and secretion, specifically incorporating secretion signals with defined amino acid sequences and overexpressing CRT, PDIA3, and optionally HAC1 proteins.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Productivity

If conventional host cells are used for protein production, then the expression system is simple and easy to maintain, but the protein production and secretion levels are low

Engineering Contradiction:
Improveprotein production and secretion levelsVSAvoidexpression system complexity
Core Design Contradiction:
ProductivityVSDevice complexity

Solution Approach 1:

The secretion signal is divided into two functional segments: an N-terminal pre-sequence (15-30 amino acids) and a C-terminal pro-sequence (40-80 amino acids). This segmentation allows each region to perform its specific function optimally - the pre-sequence for targeting and the pro-sequence for folding and secretion - thereby improving protein secretion levels without overwhelming the expression system with unmanaged complexity.

Inventive Principle:
Principle #1Segmentation

Solution Approach 2:

The pre-sequence is designed to perform preliminary actions by directing the nascent protein chain to the endoplasmic reticulum membrane during translation. This preliminary targeting action occurs co-translationally, enabling the protein to be properly routed before full synthesis is complete, thus improving secretion efficiency while maintaining systematic organization.

Inventive Principle:
Principle #10Preliminary action

2Productivity

If secretion signals with optimized amino acid sequences are used, then protein secretion efficiency is enhanced, but the design and implementation complexity increases

Engineering Contradiction:
Improvesecretion efficiencyVSAvoidsecretion signal design and implementation
Core Design Contradiction:
ProductivityVSEase of manufacture

Solution Approach 1:

Specific amino acid parameters in the secretion signal are optimized within defined ranges: the pre-sequence is designed with 15-30 amino acids containing specific hydrophobic residues at key positions, while the pro-sequence comprises 40-80 amino acids with specific disulfide bond-forming cysteine pairs. These parameter optimizations enhance secretion efficiency while providing clear design guidelines that reduce implementation complexity through standardized specifications.

Inventive Principle:
Principle #35Parameter changes

3Productivity

If host cells are genetically modified to overexpress CRT and PDIA3 proteins, then protein folding and secretion are improved, but the genetic modification process becomes more complex

Engineering Contradiction:
Improveprotein folding and secretionVSAvoidgenetic modification complexity
Core Design Contradiction:
ProductivityVSDevice complexity

Solution Approach 1:

CRT (calreticulin) and PDIA3 (protein disulfide isomerase A3) are introduced as intermediary proteins that mediate the folding and quality control of secreted proteins within the endoplasmic reticulum. These intermediaries assist the host cell's native folding machinery, improving overall secretion capacity without requiring fundamental changes to the host genome. The genetic modifications are limited to introducing these specific auxiliary proteins rather than reengineering the entire secretion pathway.

Inventive Principle:
Principle #24Intermediary (Mediator)

Data Source

PatentUS20260085107A1Production of proteins, including secreted proteins
Publication Date: 2026.03.26 GINKGO BIOWORKS INC
  • US20260085107A1 patent drawing
  • US20260085107A1 patent drawing
  • US20260085107A1 patent drawing

AI summary

This disclosure provides expression systems comprising secretion signals that promote production and/or secretion of proteins of interest, as well as one or more polynucleotides encoding chaperone proteins (e.g., CRT and/or PDIA3) which, as demonstrate herein, enhance production and/or secretion of proteins. Moreover, genetically modified host cells comprising these expression systems are capable of producing high levels of protein of interest, such as bovine lactoferrin (bLF), bovine lactoglobulin (bLG), or ovalbumin (Ova).