Rapid Thermocycler With Segmented Heating And Cold Sink

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Solution Overview

Problem

Conventional thermocyclers require significant time to complete each PCR cycle due to the large thermal mass of the heating block, leading to prolonged temperature changes and inefficiencies in the PCR process.

Innovation Solution

A rapid thermocycler design featuring a sample assembly with a small thermal mass and a separate cooling assembly with a large thermal mass, allowing for rapid temperature changes by using a heating element to quickly raise and maintain temperatures, and a cold sink to rapidly lower temperatures through physical contact.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Stability of the object's composition

If a large thermal mass heating block is used, then temperature stability is improved, but the time required for temperature changes increases

Engineering Contradiction:
Improvetemperature stabilityVSAvoidtime required for temperature changes
Core Design Contradiction:
Stability of the object's compositionVSLoss of time

Solution Approach 1:

The heating block is divided into multiple independent heating zones, each capable of independent temperature control. This segmentation allows different parts of the block to be at different temperatures simultaneously, enabling faster overall temperature changes while maintaining stability in each zone during its designated phase.

Inventive Principle:
Principle #1Segmentation

Solution Approach 2:

The system dynamically adjusts the thermal mass characteristics by using phases with different heat capacities during different cycle phases. The controller actively modulates heating power and timing to optimize the effective thermal mass, making the system respond faster to temperature change requirements while maintaining stability when needed.

Inventive Principle:
Principle #15Dynamics

2Measurement precision

If a large thermal mass heating block is used, then temperature control precision is improved, but the productivity of PCR cycles decreases

Engineering Contradiction:
Improvetemperature control precisionVSAvoidproductivity of PCR cycles
Core Design Contradiction:
Measurement precisionVSProductivity

Solution Approach 1:

The heating block is segmented into multiple independently controlled zones, allowing parallel temperature management for different reaction vials. This enables precise temperature control for each zone while reducing the overall cycle time through coordinated heating and cooling sequences across zones.

Inventive Principle:
Principle #1Segmentation

Solution Approach 2:

The system changes operational parameters dynamically during the PCR cycle, adjusting heating power, cooling intensity, and timing based on the current phase. This allows optimization of both precision and speed by using aggressive heating/cooling when needed and maintaining stable temperatures during critical phases.

Inventive Principle:
Principle #35Parameter changes

3Loss of time

If rapid temperature changes are implemented, then the time per PCR cycle is reduced, but temperature control precision may deteriorate

Engineering Contradiction:
Improvetime per PCR cycleVSAvoidtemperature control precision
Core Design Contradiction:
Loss of timeVSMeasurement precision

Solution Approach 1:

The controller dynamically adjusts heating and cooling rates based on real-time temperature feedback and the specific phase of the PCR cycle. During rapid transition phases, high power is applied to achieve fast changes, while during target temperature maintenance phases, power is precisely modulated to maintain stability, thus achieving both speed and precision.

Inventive Principle:
Principle #15Dynamics

Solution Approach 2:

The system uses continuous temperature monitoring and feedback control to adjust heating and cooling operations in real-time. This feedback mechanism ensures that rapid temperature changes are executed with sufficient precision by modulating the heating power based on actual temperature deviations from target values.

Inventive Principle:
Principle #23Feedback

Applied Scientific Principles

This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.

Function Achieved in This Case

This design reduces the time required for each PCR cycle and minimizes the duration at each target temperature, significantly accelerating the PCR process while maintaining precise temperature control for all reaction vials.

Implementation Method 1

a sample assembly having a relatively small thermal mass and an associated heating element that is capable of rapidly heating the sample assembly to a desired temperature

Methodology Applied
Scientific EffectThermal conduction: Conduction (thermal)

Implementation Method 2

a separate cooling assembly including a cold sink having a relatively large thermal mass is used to rapidly lower the temperature of the sample assembly as required by bringing the cold sink into physical contact with the sample assembly

Methodology Applied
Scientific EffectThermal conduction: Conduction (thermal)

Data Source

PatentEP2061866B1Rapid thermocycler
Publication Date: 2016.03.30 DXNA LLC
  • EP2061866B1 patent drawingFigure 1A~1B
  • EP2061866B1 patent drawingFigure 2
  • EP2061866B1 patent drawingFigure 3

AI summary

Methods and apparatus for effecting rapid thermocycling in connection with the polymerase chain reaction are disclosed. A sample assembly having a relatively small thermal mass is heated to desired PCR operating temperatures, and a separate cooling assembly is used to rapidly lower the temperature as required. In one embodiment, a sample assembly with an integrated heating element is isolated from a relatively large thermal mass cold sink when the temperature of a sample is to be raised or maintained, and brought in contact with the cold sink when the temperature is desired to be lowered.