Artificial Rhizosphere Nitrogen Fixation via Engineered Microbial-Plant Coupling

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Solution Overview

Problem

Current nitrogen fertilizer utilization efficiency in agriculture is low, leading to overuse and dependence on nitrogen fertilizers, with natural nitrogen fixation systems being limited by biological stress, low efficiency, and weak stress resistance in traditional crop roots and microorganisms.

Innovation Solution

An artificial combined rhizosphere nitrogen fixation system is developed using synthetic biology techniques, where a nitrogen-fixing and ammonium-secreting gene module is coupled with an efficient nitrogen utilization module in a plant chassis through coated seed inoculation, enhancing nitrogen fixation and utilization efficiency.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Productivity

If natural nitrogen fixation systems are used, then nitrogen fixation occurs in the rhizosphere, but nitrogen fixation efficiency is low and stress resistance is weak

Engineering Contradiction:
Improvenitrogen fixation efficiencyVSAvoidstress resistance
Core Design Contradiction:
ProductivityVSReliability

Solution Approach 1:

The invention divides the nitrogen fixation system into separate functional modules: a nitrogen-fixing microbial chassis and a plant chassis with nitrogen utilization modules. These modules can be independently optimized and then combined, allowing each component to be specialized for its specific function without the constraints of a natural integrated system.

Inventive Principle:
Principle #1Segmentation

Solution Approach 2:

The invention uses synthetic biology to alter the genetic parameters of both microbial and plant chassis, creating engineered strains with enhanced nitrogen fixation and utilization capabilities. This involves modifying gene expression, metabolic pathways, and other biological parameters to achieve superior performance compared to natural systems.

Inventive Principle:
Principle #35Parameter changes

2Productivity

If traditional crop roots are used, then plant growth occurs, but nitrogen utilization capacity is weak

Engineering Contradiction:
Improvenitrogen utilization capacityVSAvoidroot system complexity
Core Design Contradiction:
ProductivityVSDevice complexity

Solution Approach 1:

The invention extracts and isolates the nitrogen fixation function from the complex natural rhizosphere system and places it in a dedicated microbial chassis. This separates the nitrogen fixation function from the plant root system, allowing each to be optimized independently - the microbial chassis for fixation efficiency and the plant chassis for utilization capacity.

Inventive Principle:
Principle #2Taking out (Extraction)

Solution Approach 2:

The engineered microbial chassis is designed to perform multiple functions: nitrogen fixation, ammonium secretion, and interaction with plant roots. This multi-functional design replaces the need for complex root system adaptations while achieving enhanced nitrogen utilization through the microbial-plant symbiosis.

Inventive Principle:
Principle #6Universality (Multi-functionality)

3Productivity

If nitrogen fertilizers are overused, then high yields are achieved, but nitrogen utilization efficiency remains low

Engineering Contradiction:
Improve crop yieldVSAvoidnitrogen utilization efficiency
Core Design Contradiction:
ProductivityVSLoss of energy

Solution Approach 1:

The engineered microbial chassis provides autonomous nitrogen fixation and ammonium secretion functions that directly benefit the plant without requiring external nitrogen fertilizer inputs. The system self-regulates nitrogen acquisition and delivery to the plant, reducing dependence on external fertilizers while maintaining high yield potential.

Inventive Principle:
Principle #25Self-service

Solution Approach 2:

The engineered microbial chassis acts as an intermediary between atmospheric nitrogen and the plant, converting atmospheric nitrogen into biologically fixed nitrogen and secreting ammonium that the plant can readily utilize. This intermediary function bridges the gap between available nitrogen sources and plant nitrogen utilization needs.

Inventive Principle:
Principle #24Intermediary (Mediator)

Applied Scientific Principles

This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.

Function Achieved in This Case

The system significantly increases nitrogen fixation efficiency and plant growth, reducing fertilizer consumption and promoting yield, while overcoming the limitations of traditional methods by integrating microbial and plant genetic modifications for improved nitrogen utilization.

Implementation Method 1

a nitrogen-fixing microbial chassis and an efficient nitrogen utilization plant chassis are functionally coupled

Methodology Applied
Scientific EffectBiological nitrogen fixation: Enzyme

Implementation Method 2

an amtR (encoded by a DNA sequence shown in SEQ ID NO: 2) ammonium transport module that are artificially designed

Methodology Applied
Scientific EffectAmmonium transport: Ion Exchange

Implementation Method 3

The above two modules are functionally coupled through coated seed inoculation at a rhizosphere of a crop

Methodology Applied
Scientific EffectCoated seed inoculation: Adsorption

Data Source

PatentUS12258568B2High-efficiency artificial combined rhizosphere nitrogen fixation system
Publication Date: 2025.03.25 BEIJING GREEN NITROGEN BIOTECHNOLOGY CO LTD
  • US12258568B2 patent drawing
  • US12258568B2 patent drawing
  • US12258568B2 patent drawing

AI summary

An artificial combined rhizosphere nitrogen fixation system includes a recombinant nitrogen-fixing engineering bacterium, which is transformed with genes for encoding a nitrogen fixation activator Neb and an ammonium transporter amtR, and a recombinant plant, which is transformed with a gene for encoding an ammonium-affiliated protein Ham. The coupling of the functions of the above two is achieved through a seed-coated inoculation at a rhizosphere of a crop.