RISC Protein Stabilization of Nucleic Acid Therapeutics

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Solution Overview

Problem

Current nucleic acid therapeutics, such as microRNA-based therapies and siRNAs, face challenges including limited half-life and inefficient delivery to specific cells, due to degradation by RNases and immunogenicity, as well as off-target effects and toxicity from delivery vectors.

Innovation Solution

The compositions enhance nucleic acid therapeutics by incorporating RNA-induced silencing complex (RISC) proteins, specifically Argonaute 2, and using engineered exosomes or extracellular vesicles as delivery vehicles, which are modified to be devoid of endogenous nucleic acids and equipped with targeting moieties, to stabilize and deliver nucleic acid therapeutics effectively.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Duration of action of moving object

If nucleic acid therapeutics are delivered using conventional methods, then therapeutic effect is achieved, but half-life is limited due to degradation by RNases

Engineering Contradiction:
Improvehalf-life of nucleic acid therapeuticsVSAvoiddegradation by RNases
Core Design Contradiction:
Duration of action of moving objectVSObject-affected harmful factors

Solution Approach 1:

The patent introduces RISC proteins (particularly Argonaute 2) as intermediary molecules that bind to nucleic acid therapeutics and protect them from RNase degradation. This mediator approach extends the half-life of nucleic acid therapeutics by shielding them from harmful enzymatic degradation while maintaining their therapeutic function.

Inventive Principle:
Principle #24Intermediary (Mediator)

Solution Approach 2:

The patent creates composite structures by combining nucleic acid therapeutics with RISC proteins to form ribonucleoprotein complexes. This composite approach provides both the therapeutic nucleic acid sequence and the protective protein scaffold, resulting in enhanced stability and prolonged circulation half-life in vivo.

Inventive Principle:
Principle #40Composite materials

2Reliability

If delivery vectors are used to deliver nucleic acid therapeutics, then cellular delivery is improved, but immunogenicity and toxicity increase

Engineering Contradiction:
Improvedelivery efficiency to specific cellsVSAvoidimmunogenicity and toxicity
Core Design Contradiction:
ReliabilityVSObject-generated harmful factors

Solution Approach 1:

The patent extracts and eliminates the harmful delivery vector components while retaining the essential delivery function. By using RISC proteins and engineered exosomes without traditional viral or chemical transfection reagents, the method achieves cellular delivery while removing the source of immunogenicity and toxicity associated with conventional vectors.

Inventive Principle:
Principle #2Taking out (Extraction)

Solution Approach 2:

The patent employs biodegradable and naturally occurring delivery vehicles (exosomes and RISC proteins) that are metabolized by the body, replacing persistent synthetic vectors. These disposable-like delivery systems provide transient delivery function without long-term accumulation or chronic immune activation.

Inventive Principle:
Principle #27Cheap short-living objects (Disposable)

3Reliability

If conventional delivery methods are used, then nucleic acid therapeutics reach target cells, but off-target effects occur

Engineering Contradiction:
Improvedelivery to target cellsVSAvoidoff-target effects
Core Design Contradiction:
ReliabilityVSObject-generated harmful factors

Solution Approach 1:

The patent applies local quality enhancement by equipping delivery vehicles with specific targeting moieties that recognize and bind to receptors on target cells. This localized targeting capability ensures that nucleic acid therapeutics are delivered preferentially to intended cells while minimizing exposure and off-target effects in non-target tissues.

Inventive Principle:
Principle #3Local quality

4Adaptability or versatility

If endogenous nucleic acids are present in delivery vehicles, then vehicle functionality is maintained, but therapeutic specificity is reduced

Engineering Contradiction:
Improvedelivery vehicle functionalityVSAvoidtherapeutic specificity
Core Design Contradiction:
Adaptability or versatilityVSManufacturing precision

Solution Approach 1:

The patent removes endogenous nucleic acids from exosomal delivery vehicles through specific depletion protocols. This extraction process eliminates background nucleic acid contamination that could cause off-target effects, while the exosomal structure and targeting capabilities are preserved through careful engineering.

Inventive Principle:
Principle #2Taking out (Extraction)

Solution Approach 2:

The patent modifies the nucleic acid composition parameter of delivery vehicles by depleting endogenous sequences and enriching for or loading with specific therapeutic nucleic acids. This parameter control ensures high therapeutic specificity while maintaining the functional integrity of the delivery vehicle.

Inventive Principle:
Principle #35Parameter changes

Applied Scientific Principles

This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.

Function Achieved in This Case

This approach stabilizes miRNAs like miR-34a, prolongs their half-life, and enhances their therapeutic efficacy by delivering RISC proteins alongside nucleic acid therapeutics, reducing immunogenicity and improving targeted delivery, thereby increasing the stability and effectiveness of nucleic acid-based treatments.

Implementation Method 1

The compositions enhance nucleic acid therapeutics by incorporating RNA-induced silencing complex (RISC) proteins, specifically Argonaute 2, to stabilize and deliver nucleic acid therapeutics effectively

Methodology Applied
Scientific EffectRNA-induced silencing complex (RISC) protein stabilization:

Implementation Method 2

using engineered exosomes or extracellular vesicles as delivery vehicles, which are modified to be devoid of endogenous nucleic acids and equipped with targeting moieties, to stabilize and deliver nucleic acid therapeutics effectively

Methodology Applied
Scientific EffectTargeted delivery:

Data Source

PatentUS20230303645A1Compositions and methods for enhancing nucleic acid therapeutics
Publication Date: 2023.09.28 THE TRUSTEES OF COLUMBIA UNIV IN THE CITY OF NEW YORK
  • US20230303645A1 patent drawing
  • US20230303645A1 patent drawing
  • US20230303645A1 patent drawing

AI summary

The compositions for enhancing nucleic acid therapeutics are used in the treatment or prevention of diseases or conditions. The compositions improve the use of nucleic acid therapeutics with the use of enhancing or stabilizing elements, such as RNA-induced silencing complex (RISC) proteins. The compositions include at least one nucleic acid therapeutic or a polynucleotide encoding at least one nucleic acid therapeutic; at least one enhancing or stabilizing element, mutant, variant or modified form thereof, or a polynucleotide encoding at least one enhancing or stabilizing element, mutant, variant or Modified form thereof; and a delivery vehicle, where the delivery vehicle may be exosomes, microvesicles, apoptotic bodies, oncosomes, microparticles, extracellular vesicles, liposomes, nanoparticles, plasmids or vectors. The exosomes or extracellular vesicles may be engineered to be substantially devoid of endogenous nucleic acids by downregulating or inhibiting at least one protein involved in sorting or loading nucleic acids into exosomes or extracellular vesicles.