Non-destructive Maternal DNA Extraction from Seed Coats

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Solution Overview

Problem

Current methods for analyzing maternal DNA in seeds are either destructive, require germination, or are technically challenging, especially for seeds with complex shapes, leading to damage and high costs in plant breeding and quality control.

Innovation Solution

A non-destructive method involving contacting a seed with an aqueous solution to dislodge maternal DNA from the seed coat surface, allowing for analysis without damaging the seed, which can then be stored or germinated, using sensitive molecular analysis techniques.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Loss of information

If traditional DNA analysis methods are used on seeds, then genetic information can be obtained, but the seed must be destroyed or damaged in the process

Engineering Contradiction:
Improvegenetic informationVSAvoidseed viability
Core Design Contradiction:
Loss of informationVSReliability

Solution Approach 1:

The invention extracts only the necessary component (maternal DNA) from the seed by contacting the seed coat surface with an aqueous solution that selectively dislodges DNA without damaging the seed. This allows DNA analysis while preserving the seed's germination capacity and viability.

Inventive Principle:
Principle #2Taking out (Extraction)

2Quantity of substance

If seeds are germinated and grown to obtain DNA, then sufficient tissue can be collected for analysis, but time and resources are significantly consumed

Engineering Contradiction:
ImproveDNA quantityVSAvoidtime to germination and growth
Core Design Contradiction:
Quantity of substanceVSLoss of time

Solution Approach 1:

The invention performs DNA extraction from the seed coat surface before germination, obtaining sufficient maternal DNA for analysis without waiting for the seed to germinate and grow. This preliminary action saves significant time and resources while still providing adequate DNA quantity for molecular analysis.

Inventive Principle:
Principle #10Preliminary action

3Measurement precision

If manual DNA extraction from seed coat is performed, then genetic analysis is possible, but the process is tedious and imprecise

Engineering Contradiction:
Improvegenetic analysis accuracyVSAvoidequipment and procedure complexity
Core Design Contradiction:
Measurement precisionVSDevice complexity

Solution Approach 1:

The invention uses an aqueous solution (hydraulic approach) to automatically dislodge DNA from the seed coat surface through contact and agitation, replacing tedious manual extraction methods. This hydraulic approach simplifies the procedure while maintaining or improving DNA extraction efficiency and analysis precision.

Inventive Principle:
Principle #29Pneumatics and hydraulics

4Loss of information

If destructive DNA analysis methods are used, then complete genetic information can be obtained, but seeds cannot be stored or germinated afterward

Engineering Contradiction:
Improvecomplete genetic informationVSAvoidseed storage capacity
Core Design Contradiction:
Loss of informationVSDuration of action of stationary object

Solution Approach 1:

The invention takes out only the maternal DNA component from the seed coat surface using aqueous contact, leaving the seed intact and undamaged. This selective extraction provides complete maternal genetic information for analysis while preserving the seed's ability to be stored long-term or germinated afterward.

Inventive Principle:
Principle #2Taking out (Extraction)

Applied Scientific Principles

This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.

Function Achieved in This Case

Enables rapid, efficient, and cost-effective analysis of maternal DNA, reducing the need for tissue sampling and specialized equipment, and allowing for high-throughput screening of large seed populations, thereby accelerating genetic selection and quality control processes.

Implementation Method 1

agitating the seed in contact with the aqueous solution to dislodge DNA from the seed coat surface

Methodology Applied
Scientific EffectAgitation-induced dislodgement:

Data Source

PatentEP2859101B1Method for analysing maternal DNA in large plant populations
Publication Date: 2024.12.11 RIJK ZWAAN ZAADTEELT & ZAADHANDEL BV
  • EP2859101B1 patent drawingFigure 1
  • EP2859101B1 patent drawingFigure 2

AI summary

The present invention relates to a non-destructive method for analysing maternal DNA of a seed. In this method the DNA is dislodged from the seed coat surface and can be used to collect information on the genome of the maternal parent of the seed. Also, the present invention provides a high throughput DNA analysis system for large plant populations.