SHP-2 Gene Mutations in c-KIT Dependent Melanoma Detection

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Solution Overview

Problem

Current methods fail to effectively detect and treat c-KIT-dependent melanomas, particularly those occurring on acral, mucosal, and chronically sun-exposed skin, as they often lack mutations in BRAF and NRAS, and previous investigations have underestimated the role of c-KIT in melanoma progression.

Innovation Solution

The development of methods to detect c-KIT-dependent melanomas through sequence mutations and amplifications in the c-KIT gene, including SHP2 mutations, and the use of c-Kit inhibitors such as imatinib mesylate, dasatinib, or sunitinib to inhibit melanoma cell proliferation.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Measurement precision

If current detection methods are used for melanoma, then detection is possible, but detection accuracy is insufficient for c-KIT-dependent melanomas lacking BRAF and NRAS mutations

Engineering Contradiction:
Improvedetection accuracyVSAvoiddetection reliability
Core Design Contradiction:
Measurement precisionVSReliability

Solution Approach 1:

The patent changes the detection parameter from BRAF/NRAS mutation status to c-KIT mutation status and SHP2 expression levels. This parameter change enables accurate detection of c-KIT-dependent melanomas that were previously undetectable by standard BRAF/NRAS testing methods

Inventive Principle:
Principle #35Parameter changes

Solution Approach 2:

The patent introduces SHP2 as an intermediary marker to detect c-KIT-dependent melanomas. Since SHP2 is downstream of c-KIT in the signaling pathway and shows altered expression in response to c-KIT activation, it serves as a reliable intermediary indicator for tumors that lack direct BRAF/NRAS mutations

Inventive Principle:
Principle #24Intermediary (Mediator)

2Reliability

If c-KIT role in melanoma is underestimated, then treatment options are limited, but accurate detection and treatment of c-KIT-dependent melanomas improves outcomes

Engineering Contradiction:
Improvetreatment effectivenessVSAvoidinformation about c-KIT dependency
Core Design Contradiction:
ReliabilityVSLoss of information

Solution Approach 1:

The patent performs preliminary detection of c-KIT mutations and SHP2 expression levels before initiating treatment. This preliminary action identifies patients who will respond to c-Kit inhibitors, preventing loss of treatment opportunity and enabling targeted therapy selection before standard treatment fails

Inventive Principle:
Principle #10Preliminary action

Solution Approach 2:

The patent establishes a feedback mechanism where SHP2 expression levels and c-KIT mutation status are used to predict treatment response to c-Kit inhibitors. This feedback loop allows clinicians to select appropriate targeted therapies based on molecular profiling, improving treatment effectiveness while avoiding ineffective standard therapies

Inventive Principle:
Principle #23Feedback

Data Source

PatentEP3061834B1SHP-2 gene mutations in melanoma
Publication Date: 2020.01.08 RGT UNIV OF CALIFORNIA
  • EP3061834B1 patent drawingFigure 1
  • EP3061834B1 patent drawingFigure 2
  • EP3061834B1 patent drawingFigure 3

AI summary

The present invention provides methods of detecting c-KIT-dependent- melanoma for diagnostic and prognostic purposes. The invention further provides methods of treating such melanoma by inhibiting c-KIT.