SlpA-Expressing Probiotics for C. difficile Colonization

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Solution Overview

Problem

Current treatments for Clostridium difficile infection (CDI) are inadequate, as antibiotics alter the gut microbiome and do not effectively prevent colonization, leading to significant healthcare costs and disease burden.

Innovation Solution

Probiotic bacteria such as Lactococcus lactis and Lactobacillus acidophilus are engineered to express the Clostridium difficile surface protein SlpA or its chimeric variants, which are administered to the gut to treat or prevent CDI by colonizing and competing with pathogenic bacteria.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Reliability

If antibiotics are used to treat C. difficile infection, then bacterial infection is suppressed, but the gut microbiome composition is altered and colonization resistance is reduced

Engineering Contradiction:
Improveinfection suppressionVSAvoidmicrobiome alteration
Core Design Contradiction:
ReliabilityVSObject-generated harmful factors

Solution Approach 1:

The patent uses engineered probiotic bacteria as an intermediary organism that expresses C. difficile SlpA protein. These probiotics act as a mediator to compete with C. difficile for colonization sites without directly applying antibiotics, thereby suppressing infection while preserving the natural microbiome composition and avoiding the harmful effects of antibiotic-induced microbiome disruption

Inventive Principle:
Principle #24Intermediary (Mediator)

Solution Approach 2:

The invention takes the harmful SlpA adhesin protein from C. difficile and converts it into a beneficial tool by having probiotic bacteria express this protein. The probiotics use the pathogen's own adhesin to outcompete C. difficile for binding sites on intestinal epithelial cells, effectively turning the pathogen's weapon against it while avoiding antibiotic use

Inventive Principle:
Principle #22Blessing in disguise (Convert harm into benefit)

2Object-affected harmful factors

If vaccines are developed to prevent C. difficile disease, then disease symptoms are reduced, but colonization by C. difficile is not prevented

Engineering Contradiction:
Improvedisease symptomsVSAvoidcolonization prevention
Core Design Contradiction:
Object-affected harmful factorsVSReliability

Solution Approach 1:

The patent employs probiotic bacteria that preemptively occupy colonization sites on intestinal epithelial cells before C. difficile can establish infection. By expressing SlpA adhesin, the probiotics perform preliminary action of binding to epithelial cells and blocking access to C. difficile, preventing both colonization and subsequent disease symptoms

Inventive Principle:
Principle #10Preliminary action

3Reliability

If probiotic bacteria express C. difficile SlpA protein, then colonization competition is enhanced, but genetic engineering complexity increases

Engineering Contradiction:
Improvecolonization competitionVSAvoidgenetic engineering
Core Design Contradiction:
ReliabilityVSDevice complexity

Solution Approach 1:

The patent extracts only the essential SlpA adhesin protein expression capability from C. difficile and transfers this specific function to probiotic bacteria through genetic engineering. Rather than transferring entire pathogenicity factors, only the colonization-related SlpA gene is isolated and expressed in the probiotic host, minimizing genetic complexity while maximizing colonization competition

Inventive Principle:
Principle #2Taking out (Extraction)

Solution Approach 2:

The invention applies local quality by giving the probiotic bacteria a specific localized function - expression of SlpA adhesin on their surface - without requiring comprehensive genetic modification. The probiotics maintain their native beneficial properties while acquiring the specific local capability to compete with C. difficile through SlpA-mediated adhesion

Inventive Principle:
Principle #3Local quality

Data Source

PatentUS11839649B2Compositions comprising recombinant probiotic bacteria and methods of use thereof
Publication Date: 2023.12.12 THE ARIZONA BOARD OF REGENTS ON BEHALF OF THE UNIV OF ARIZONA
  • US11839649B2 patent drawing
  • US11839649B2 patent drawing
  • US11839649B2 patent drawing

AI summary

The invention features probiotic bacteria expressing Clostridium difficile SlpA, or fragment thereof, and its use for the treatment or prevention of Clostridium difficile infection and gut colonization.