Soybean Disease Resistance Marker Detection

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Solution Overview

Problem

There is a need for soybean plants with improved resistance to Brown Stem Rot and Frogeye Leaf Spot, and methods to identify and select such plants effectively.

Innovation Solution

The method involves detecting marker loci and haplotypes associated with resistance to Frogeye Leaf Spot and Brown Stem Rot, using molecular markers to identify and select soybean plants or germplasm with improved resistance, and breeding techniques to combine these resistances.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Measurement precision

If traditional phenotypic selection methods are used to identify resistant soybean plants, then the selection process is simple and low-cost, but it is time-consuming and less precise

Engineering Contradiction:
Improveselection precisionVSAvoidselection time
Core Design Contradiction:
Measurement precisionVSLoss of time

Solution Approach 1:

The patent applies preliminary action by performing marker detection on seedling tissue (e.g., cotyledons) at an early developmental stage to predict disease resistance before the plants mature. This allows resistance traits to be identified in the F2 generation rather than waiting for phenotypic expression in later generations, dramatically reducing the time required for selection while maintaining high precision through molecular marker-assisted selection (MAS).

Inventive Principle:
Principle #10Preliminary action

Solution Approach 2:

The patent replaces mechanical/phenotypic observation methods with molecular detection systems. Instead of visually assessing disease resistance traits in mature plants (mechanical observation), the invention uses DNA marker analysis (molecular level detection) to identify resistance alleles. This substitution enables precise, rapid identification of resistant plants without the time delays associated with traditional phenotypic evaluation.

Inventive Principle:
Principle #28Mechanics substitution (Replace mechanical system)

2Reliability

If multiple disease resistance traits are bred together, then the overall resistance level improves, but the breeding complexity and difficulty increase

Engineering Contradiction:
Improvedisease resistanceVSAvoidbreeding complexity
Core Design Contradiction:
ReliabilityVSDevice complexity

Solution Approach 1:

The patent applies segmentation by breaking down the complex task of breeding for multiple disease resistances into separate, manageable marker-assisted selection steps. Each resistance trait (e.g., Brown Stem Rot, Frogeye Leaf Spot, Sudden Death Syndrome) is targeted with specific molecular markers, allowing breeders to independently track and select for each resistance allele. This segmentation simplifies the overall breeding process by providing clear molecular indicators for each trait rather than relying on complex phenotypic evaluation of multiple simultaneous traits.

Inventive Principle:
Principle #1Segmentation

Solution Approach 2:

The patent employs universal molecular marker systems that can detect multiple resistance traits simultaneously. The same basic MAS infrastructure and molecular biology techniques are used across different resistance breeding programs, making the approach universally applicable. Multiple resistance genes can be tracked using parallel marker assays, allowing a single breeding program to accumulate multiple resistance traits without proportionally increasing complexity.

Inventive Principle:
Principle #6Universality (Multi-functionality)

3Productivity

If molecular marker analysis is used to identify resistant plants, then selection precision and efficiency improve, but the cost and technical complexity of the process increase

Engineering Contradiction:
Improveselection efficiencyVSAvoiddetection complexity
Core Design Contradiction:
ProductivityVSDevice complexity

Solution Approach 1:

The patent uses molecular markers as genetic copies or proxies for the actual disease resistance genes. Instead of directly assessing the complex resistance phenotype or analyzing the entire resistance gene sequences, the invention detects specific marker alleles that are tightly linked to resistance genes. These markers serve as simplified copies that indicate the presence of resistance traits, reducing detection complexity while maintaining high selection efficiency and accuracy.

Inventive Principle:
Principle #26Copying

Data Source

PatentUS10017829B2Genetic loci associated with Frogeye Leaf Spot resistance and Brown Stem Rot resistance and methods of use
Publication Date: 2018.07.10 PIONEER HI BREED INTERNATIONAL INC
  • US10017829B2 patent drawing
  • US10017829B2 patent drawing
  • US10017829B2 patent drawing

AI summary

Various methods and compositions are provided for identifying and/or selecting soybean plants or soybean germplasm with improved resistance to Frogeye Leaf Spot and/or Brown Stem Rot. In certain embodiments, the method comprises detecting at least one marker locus that is associated with resistance to Frogeye Leaf Spot and/or Brown Stem Rot. In other embodiments, the method further comprises detecting at least one marker profile or haplotype associated with resistance to Frogeye Leaf Spot and/or Brown Stem Rot. In further embodiments, the method comprises crossing a selected soybean plant with a second soybean plant. Further provided are markers, primers, probes and kits useful for identifying and/or selecting soybean plants or soybean germplasm with improved resistance to Frogeye Leaf Spot and/or Brown Stem Rot.