Soybean Cultivar Gene Editing for Trait Stacking

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Solution Overview

Problem

Soybean breeding is complex due to self-pollination, requiring intensive research and development to produce new cultivars with desired traits like yield, disease resistance, and environmental adaptability, and existing methods are inefficient in introducing specific genetic alleles for improved traits.

Innovation Solution

The development of soybean cultivar EC1662475 and/or EC1766217, which includes a method for introducing transgenes for herbicide resistance, disease resistance, insect resistance, and modified fatty acid profiles, using site-specific recombination systems to integrate desired traits into the soybean genome, allowing for the production of progeny with specific physiological and morphological characteristics.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Productivity

If traditional breeding methods are used, then genetic diversity is maintained through self-pollination, but the efficiency of introducing specific genetic alleles for desired traits is low

Engineering Contradiction:
Improvebreeding efficiencyVSAvoidtrait introduction efficiency
Core Design Contradiction:
ProductivityVSEase of manufacture

Solution Approach 1:

The patent replaces traditional mechanical breeding methods (manual pollination, selection, and crossing) with molecular biology techniques including CRISPR-Cas9 gene editing, TALEN, and zinc finger nucleases. These molecular tools enable precise, targeted modification of specific genes without requiring generations of crossing and selection, thereby dramatically improving breeding efficiency while maintaining genetic integrity.

Inventive Principle:
Principle #28Mechanics substitution (Replace mechanical system)

Solution Approach 2:

The patent segments the breeding process into two distinct phases: (1) generation of mutant libraries through high-throughput mutagenesis and screening to identify alleles with desired traits, and (2) precise introduction of selected alleles into elite cultivars using gene editing tools. This segmentation allows parallel processing of trait discovery and cultivar improvement, resolving the contradiction between maintaining genetic diversity and efficiently introducing specific traits.

Inventive Principle:
Principle #1Segmentation

2Reliability

If intensive research and development is conducted to produce new cultivars with desired traits, then yield and disease resistance are improved, but the complexity and time required increases

Engineering Contradiction:
Improvedisease resistanceVSAvoidbreeding time
Core Design Contradiction:
ReliabilityVSLoss of time

Solution Approach 1:

The patent implements preliminary action by pre-screening large mutant libraries using high-throughput phenotyping and genotyping to identify alleles conferring disease resistance and yield improvement before introducing them into elite cultivars. This preliminary identification and characterization of beneficial alleles eliminates the need for time-consuming field trials and selection processes, reducing breeding time while maintaining reliable trait improvement.

Inventive Principle:
Principle #10Preliminary action

Solution Approach 2:

The patent replaces traditional multi-generational field testing and selection methods with molecular marker-assisted selection and gene editing verification. By using DNA markers linked to disease resistance genes and CRISPR-based verification systems, the patent achieves reliable trait confirmation in a single generation rather than requiring 5-10 years of conventional breeding and field evaluation.

Inventive Principle:
Principle #28Mechanics substitution (Replace mechanical system)

3Adaptability or versatility

If multiple traits are introduced into soybean cultivars, then adaptability and yield potential are enhanced, but the genetic integrity of the variety may be compromised

Engineering Contradiction:
Improveenvironmental adaptabilityVSAvoidgenetic integrity
Core Design Contradiction:
Adaptability or versatilityVSStability of the object's composition

Solution Approach 1:

The patent applies local quality by introducing multiple desired traits through site-specific gene editing at predetermined locations in the genome, rather than through random mutagenesis or extensive crossing. Each trait modification occurs at a specific genomic locus with precise control over the genetic change, allowing multiple traits to be stacked while maintaining the overall genetic integrity and uniformity of the elite cultivar background.

Inventive Principle:
Principle #3Local quality

Solution Approach 2:

The patent replaces traditional crossing methods that would shuffle the entire genome and require multiple generations of backcrossing to recover the original cultivar background with direct gene editing. This substitution allows introduction of multiple traits (e.g., disease resistance, yield, stress tolerance) through independent, targeted modifications without disturbing the genetic integrity of the elite parental lines, maintaining cultivar identity while enhancing adaptability.

Inventive Principle:
Principle #28Mechanics substitution (Replace mechanical system)

Data Source

PatentUS11723340B2Soybean variety
Publication Date: 2023.08.15 SYNGENTA CROP PROTECITON AG

AI summary

The present invention directed in party to soybean variety EC1662475 and/or EC1766217 breeding and development. The present invention particularly relates to soybean variety EC1662475 and/or EC1766217 and its seed, cells, germplasm, plant parts, and progeny, and methods of using EC1662475 and/or EC1766217, e.g., in a breeding program.