Spirocyclic Dihydropyranopyrimidine KRAS Inhibitors for Mutant KRAS Binding
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Solution Overview
Problem
Current therapies targeting KRas signaling in cancer cells are limited, as KRas is considered undruggable due to its intrinsic GTPase activity deficiency and insensitivity to GTPase-activating proteins, leading to increased KRas signaling in various human cancers.
Innovation Solution
Development of spirocyclic dihydropyranopyrimidine compounds that inhibit dysregulated KRas proteins, including mutant forms, by specifically binding to KRas and modulating its activity.
Engineering Contradictions & Design Principles
Engineering Contradiction Analysis
1Reliability
If conventional therapies are used to target KRas signaling, then treatment options are available for some cancers, but KRas inhibition is ineffective due to intrinsic GTPase activity deficiency and insensitivity to GTPase-activating proteins
Solution Approach 1:
The patent employs parameter changes by designing spirocyclic dihydropyranopyrimidine compounds with specific molecular structures (Formula I, II, III, IV, V, or A) that alter the binding parameters to KRas, enabling effective inhibition despite KRas's intrinsic resistance to conventional GTPase-activating proteins. The compounds feature specific substituents (R1, R2, R3, R4, R5, R6, R7, R8, R9, R10) and ring structures that modify interaction parameters with KRas to overcome its GTPase activity deficiency.
Solution Approach 2:
The spirocyclic dihydropyranopyrimidine compounds act as intermediary molecules that bridge the gap between conventional therapy and KRas inhibition. These compounds directly bind to KRas and modulate its activity, serving as a mediator that overcomes KRas's insensitivity to GTPase-activating proteins by providing an alternative inhibition mechanism through specific molecular recognition and binding.
2Reliability
If KRas is considered undruggable due to its intrinsic properties, then GTPase activity cannot be effectively inhibited, but spirocyclic dihydropyranopyrimidine compounds can specifically bind and inhibit KRas activation
Solution Approach 1:
The patent applies segmentation by dividing the complex challenge of KRas inhibition into manageable structural components. The spirocyclic dihydropyranopyrimidine compounds are designed with segmented structures including a dihydropyranopyrimidine core, spirocyclic moieties, and various substituent groups (R1-R10) that can be independently optimized. This segmentation allows systematic development of KRas inhibitors by modifying individual structural elements to enhance binding affinity and selectivity.
Solution Approach 2:
The patent employs composite materials principles by creating spirocyclic dihydropyranopyrimidine compounds that combine multiple functional structural elements into a single therapeutic molecule. The compounds integrate a dihydropyranopyrimidine core with spirocyclic structures and various heterocyclic or hydrocarbon substituents, forming a composite molecular architecture that achieves effective KRas inhibition through synergistic interactions of different structural components.
3Reliability
If KRas has intrinsic GTPase activity deficiency, then sustained KRas activation occurs leading to cancer progression, but spirocyclic dihydropyranopyrimidine compounds can modulate KRas activity to treat KRas-associated cancers
Solution Approach 1:
The patent applies preliminary action by designing spirocyclic dihydropyranopyrimidine compounds that proactively bind to KRas and prevent sustained activation before it can drive cancer progression. The compounds are structured to preemptively inhibit KRas GTPase activity by forming stable complexes with KRas, thereby preventing the prolonged GTP-bound state that leads to uncontrolled cell growth and cancer development.
Solution Approach 2:
The patent converts the harmful intrinsic GTPase activity deficiency of KRas into a therapeutic opportunity. By designing compounds that specifically exploit KRas's structural characteristics and binding properties, the spirocyclic dihydropyranopyrimidine compounds transform KRas's resistance to conventional inhibition into a target for selective drug binding, enabling effective treatment of KRas-associated cancers through structure-based drug design.
Data Source
AI summary
Provided herein are compounds of Formula (II) (e.g., Formula (II-a), (II-b), (II-a1), (II-b1), (II-a2), (II-b2), (II-3), (II-a3), (II-4), (II-a4), (II-5), (II-a5), (II-6), (II-a6), (II-7), (II-a7), (II-7), or (II-a8)), Formula (III) (e.g., Formula (III-1), (III-2), (III-3), (III-4), (III-5), (III-6), (III-7), or (III-8)), Formula (IV) (e.g., Formula (IV-a), (IV-b), (IV-c), (IV-a1), (IV-b1), (IV-a2), (IV-b2), (IV-a3), (IV-b3), (IV-a4), (IV-b4), (IV-a5), (IV-b5), (IV-a6), (IV-b6), (IV-a7), (IV-b7), (IV-a8), or (IV-b8)), Formula (V) (e.g., Formula (V-a) or (V-b), (V-a1), (V-c), (V-d), (V-b1), (V-a2), (V-b2), (V-a3), or (V-b3)), Formula (VI) (e.g., Formula (VI-a), (VI-b), (VI-c), (VI-d), or (VI-e))), or Formula (A) (e.g., Formula (I-a1)), or pharmaceutically acceptable salts thereof, that inhibit a KRas protein (e.g., a dysregulated KRas protein (e.g., a mutated or amplified KRas protein)). This disclosure also provides compositions containing the compounds as provided herein, or pharmaceutically acceptable salts thereof, as well as methods of using and making the same.


