Stem Cell Cloning via Gene-Induced Dedifferentiation

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Solution Overview

Problem

Conventional methods for cloning stem cells or somatic cells, such as the limiting dilution method, result in non-uniform cell populations due to variations in gene copy numbers and integration sites, limiting their applicability and efficiency, especially for cells requiring gene manipulation like homologous recombination.

Innovation Solution

A method involving the introduction of an exogenous gene associated with differentiation into stem cells, inducing differentiation into somatic cells, dedifferentiating the somatic cells, and isolating stem cells with the incorporated gene, which enhances differentiation efficiency and allows for the production of uniform cell clones suitable for various somatic cell types, including megakaryocyte progenitor cells.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Ease of manufacture

If the limiting dilution method is used for cloning stem cells, then the process is simple and widely applicable, but the resulting cell populations are non-uniform due to variations in gene copy numbers and integration sites

Engineering Contradiction:
Improvecloning process simplicityVSAvoidcell population uniformity
Core Design Contradiction:
Ease of manufactureVSManufacturing precision

Solution Approach 1:

The invention segments the cloning process into distinct phases: initial expansion of stem cell colonies followed by single-cell isolation and re-cloning. This segmentation allows the simple limiting dilution method to be used for expansion while ensuring uniformity through subsequent single-cell derivation, resolving the contradiction between process simplicity and cell population uniformity

Inventive Principle:
Principle #1Segmentation

Solution Approach 2:

The invention performs preliminary expansion of stem cell colonies before final cloning. By first expanding colonies to ensure adequate cell numbers and then isolating single cells for definitive cloning, the method preliminarily establishes conditions that enable both simple processing and uniform cell populations with consistent gene integration

Inventive Principle:
Principle #10Preliminary action

2Adaptability or versatility

If cells are obtained by introducing an exogenous gene, then gene manipulation is achieved, but the probability of obtaining desired uniform cells is low

Engineering Contradiction:
Improvegene manipulation capabilityVSAvoidsuccess rate of obtaining uniform cells
Core Design Contradiction:
Adaptability or versatilityVSReliability

Solution Approach 1:

The invention uses single-cell cloning to create identical copies of a single parent cell that has successfully integrated the exogenous gene. By deriving entire cell lines from single cells, uniform copies with consistent gene integration are obtained, resolving the contradiction between gene manipulation versatility and reliability of obtaining uniform cells

Inventive Principle:
Principle #26Copying

Solution Approach 2:

The invention incorporates screening and verification steps to identify colonies with successful gene integration before proceeding to single-cell isolation. This feedback mechanism ensures that only cells with desired gene integration are selected for cloning, improving the success rate while maintaining gene manipulation capability

Inventive Principle:
Principle #23Feedback

3Ease of operation

If conventional cloning methods are used, then the process is straightforward, but the method cannot be applied to all cell types especially those requiring gene manipulation

Engineering Contradiction:
Improvecloning operation simplicityVSAvoidapplicability to different cell types
Core Design Contradiction:
Ease of operationVSAdaptability or versatility

Solution Approach 1:

The invention creates a universal cloning protocol that combines initial colony expansion with subsequent single-cell isolation and re-cloning. This multi-functional approach can be applied to various cell types including stem cells, somatic cells, and cells requiring gene manipulation, resolving the contradiction between operational simplicity and broad applicability

Inventive Principle:
Principle #6Universality (Multi-functionality)

Data Source

PatentUS20240026304A1Method for Producing Stem Cell Clones Suitable for Induction of Differentiation into Somatic Cells
Publication Date: 2024.01.25 MEGAKARYON CORP
  • US20240026304A1 patent drawing
  • US20240026304A1 patent drawing
  • US20240026304A1 patent drawing

AI summary

Provided is a method for producing a stem cell clone, which comprises the steps of: (i) introducing into stem cells an exogenous gene associated with induction of differentiation into somatic cells; (ii) inducing differentiation of the stem cells, introduced with an exogenous gene, into the somatic cells; (iii) dedifferentiating the differentiation-induced somatic cells; and (iv) isolating stem cells having the exogenous gene incorporated into a chromosome thereof from a colony of the stem cells formed in step (iii).