Thienopyrimidine Derivative Crystallization for High-Purity Synthesis

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Solution Overview

Problem

There is a need for a safe and efficient production method of thienopyrimidine derivatives with gonadotropin releasing hormone antagonistic action, particularly in high yield and high purity.

Innovation Solution

A production method involving specific reactions and conditions, including the use of 1,1′-carbonyldiimidazole and methoxyamine, along with controlled amounts and solvents, to synthesize 1-{4-[1-(2,6-difluorobenzyl)-5-dimethylaminomethyl-3-(6-methoxypyridazin-3-yl)-2,4-dioxo-1,2,3,4-tetrahydrothieno[2,3-d]pyrimidin-6-yl]phenyl}-3-methoxyurea or its salts, followed by crystallization to obtain high-quality crystals.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Manufacturing precision

If conventional production methods are used for thienopyrimidine derivatives, then the production process is simpler, but the yield and purity are insufficient

Engineering Contradiction:
ImprovepurityVSAvoidproduction process complexity
Core Design Contradiction:
Manufacturing precisionVSDevice complexity

Solution Approach 1:

The production process is divided into multiple discrete steps: (1) condensation of thieno[2,3-d]pyrimidine-2,4-dione with 4-aminophenyl group to form intermediate compound, (2) cyclization with pyridazin-3-yl group, (3) reduction of nitro group to amino group, and (4) coupling with carbonyldiimidazole and methoxyamine. Each step has specific reagents, conditions, and purification methods defined, allowing systematic control of purity while managing overall process complexity through modularization.

Inventive Principle:
Principle #1Segmentation

Solution Approach 2:

The patent employs preliminary actions by using protected intermediates and pre-formed building blocks. For example, the thieno[2,3-d]pyrimidine-2,4-dione is first formed with specific substituents before final coupling, and the nitro group is reduced to amino group in a controlled intermediate step. This allows purification and quality control at each stage, ensuring high final purity while managing complexity through staged synthesis.

Inventive Principle:
Principle #10Preliminary action

2Productivity

If conventional production methods are used for thienopyrimidine derivatives, then the production process is simpler, but the yield is insufficient

Engineering Contradiction:
ImproveyieldVSAvoidproduction process complexity
Core Design Contradiction:
ProductivityVSDevice complexity

Solution Approach 1:

The patent optimizes reaction parameters at each step to maximize yield. Specific conditions include: using 1,1′-carbonyldiimidazole in controlled equivalents (1.05-1.5 eq), controlling pH during hydrolysis (using 2M HCl or NaOH), selecting specific solvents (DMF, DMSO, acetonitrile), and optimizing temperatures (0-100°C range). These parameter optimizations ensure high yield while maintaining manageable process complexity through standardized conditions.

Inventive Principle:
Principle #35Parameter changes

Solution Approach 2:

The synthesis pathway maintains continuous useful action by designing each step to proceed efficiently with minimal idle time. Intermediates are carried forward through controlled purification steps, and reaction conditions are optimized to minimize waste. The multi-step sequence ensures continuous progression from starting materials to final product with high overall yield, while complexity is managed through systematic process integration.

Inventive Principle:
Principle #20Continuity of useful action

3Reliability

If high quality and high yield are pursued, then the production method becomes safer and more reliable, but the process complexity increases

Engineering Contradiction:
Improveproduction safety and reliabilityVSAvoidproduction process complexity
Core Design Contradiction:
ReliabilityVSDevice complexity

Solution Approach 1:

The patent incorporates feedback mechanisms through controlled purification steps and quality control at each stage. HPLC analysis is performed to monitor purity, and intermediate compounds are purified by recrystallization or chromatography as needed. This feedback allows real-time adjustment of conditions to ensure safety and reliability, while the systematic approach manages complexity through standardized quality control protocols.

Inventive Principle:
Principle #23Feedback

Solution Approach 2:

The patent employs beforehand cushioning by using protected intermediates and controlled reaction conditions that prevent formation of harmful byproducts. Specific measures include: controlling stoichiometry of reagents (using 1.05-1.5 equivalents of carbonyldiimidazole), pH control during hydrolysis (using controlled amounts of HCl or NaOH), and selecting solvents with appropriate boiling points and viscosities. These preventive measures ensure safe production while managing complexity through pre-established control parameters.

Inventive Principle:
Principle #11Beforehand cushioning (Prior cushioning)

Applied Scientific Principles

This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.

Function Achieved in This Case

The method enables the safe production of high-quality thienopyrimidine derivatives in high yield, suitable for use as raw materials, with reduced impurities and improved purity through controlled reaction conditions and crystallization processes.

Implementation Method 1

reacting 6-(4-aminophenyl)-1-(2,6-difluorobenzyl)-5-dimethylaminomethyl-3-(6-methoxypyridazin-3-yl) thieno[2,3-d]pyrimidine-2,4(1H, 3H)-dione or salt thereof, 1,1′-carbonyldiimidazole or a salt thereof and methoxyamine or a salt thereof

Methodology Applied
Scientific EffectChemical reaction: Chemical Bonding

Implementation Method 2

adding tetrahydrofuran to the resulting reaction mixture (may be a reaction solution) or 1-{4-[1-(2,6-difluorobenzyl)-5-dimethylaminomethyl-3-(6-methoxypyridazin-3-yl)-2,4-dioxo-1,2,3,4-tetrahydrothieno[2,3-d]pyrimidin-6-yl]phenyl}-3-methoxyurea or a salt thereof isolated from the resulting reaction mixture (may be a reaction solution)

Methodology Applied
Scientific EffectCrystallization: Crystallisation

Implementation Method 3

recrystallizing a crystal of a tetrahydrofuran solvate of 1-{4-[1-(2,6-difluorobenzyl)-5-dimethylaminomethyl-3-(6-methoxypyridazin-3-yl)-2,4-dioxo-1,2,3,4-tetrahydrothieno[2,3-d]pyrimidin-6-yl]phenyl}-3-methoxyurea or a salt thereof using an alkyl alcohol and one solvent selected from the group consisting of dimethylsulfoxide, dimethylformamide (N,N′-dimethylformamide, in the present specification, to also be referred to as DMF) and dimethylacetamide (N,N′=dimethylacetamide, in the present specification, to also be referred to as DMAc)

Methodology Applied
Scientific EffectRecrystallization: Crystallisation

Data Source

PatentUS20250368660A1Thienopyrimidine derivative
Publication Date: 2025.12.04 TAKEDA PHARMA CO LTD
  • US20250368660A1 patent drawing
  • US20250368660A1 patent drawing
  • US20250368660A1 patent drawing

AI summary

The present invention provides a production method of a thienopyrimidine derivative or a salt thereof which has a gonadotropin releasing hormone (GnRH) antagonistic action with high quality in high yield. The present invention provides a method of producing a thienopyrimidine derivative, which comprises reacting 6-(4-aminophenyl)-1-(2,6-difluorobenzyl)-5-dimethylaminomethyl-3-(6-methoxypyridazin-3-yl) thieno[2,3-d]pyrimidine-2,4 (1H,3H)-dione or salt thereof, 1,1′-carbonyldiimidazole or a salt thereof and methoxyamine or a salt thereof, and the like.