Thin Hydrogel Matrix Thickness Control for In Situ Analysis

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Solution Overview

Problem

Existing methods for embedding biological samples in three-dimensional polymerized matrices, such as hydrogels, result in incongruous thicknesses between the sample and the matrix, leading to excessive background noise and inefficiencies in sample preparation and analysis, particularly for low-concentration analytes like nucleic acids.

Innovation Solution

The use of spacers like adhesive tape or microparticles to control the thickness of the polymerized matrix, allowing for precise embedding of biological samples with thicknesses between 5 µm and 200 µm, using readily available materials that are non-integral to the substrates, thereby reducing background noise and improving signal-to-noise ratios.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Manufacturing precision

If conventional polymerization methods are used, then polymer matrix can be formed, but the thickness cannot be precisely controlled and voids form

Engineering Contradiction:
Improvethickness controlVSAvoidvoid formation
Core Design Contradiction:
Manufacturing precisionVSReliability

Solution Approach 1:

The patent applies preliminary action by pre-forming a support structure with the exact desired thickness before initiating polymerization. The support structure serves as a thickness template, ensuring the final polymer matrix achieves precise thickness control without void formation. This preliminary preparation eliminates the need for post-processing thickness adjustment.

Inventive Principle:
Principle #10Preliminary action

Solution Approach 2:

The patent changes the physical state and composition parameters by incorporating a liquid monomer mixture into the support structure, then transforming it into a solid polymer matrix through controlled polymerization. This parameter transformation allows the material to conform to the support structure's geometry, achieving precise thickness control while eliminating voids.

Inventive Principle:
Principle #35Parameter changes

2Ease of manufacture

If polymerization is performed without support structure, then material can be applied freely, but thickness uniformity cannot be maintained

Engineering Contradiction:
Improvematerial applicationVSAvoidthickness uniformity
Core Design Contradiction:
Ease of manufactureVSManufacturing precision

Solution Approach 1:

The patent applies local quality by using a support structure that provides localized thickness control throughout the material application area. The support structure's surface geometry directly dictates the polymer matrix thickness at each location, ensuring uniformity while allowing free material application. This localized control mechanism maintains ease of manufacture alongside precision.

Inventive Principle:
Principle #3Local quality

3Area of stationary object

If thick polymer layers are applied, then complete coverage is achieved, but voids and incomplete polymerization occur

Engineering Contradiction:
Improvecoverage areaVSAvoidpolymerization completeness
Core Design Contradiction:
Area of stationary objectVSReliability

Solution Approach 1:

The patent applies segmentation by dividing the polymerization process into controlled stages and using a support structure to segment the material into uniform thin layers. Each layer polymerizes completely due to its controlled thickness, ensuring overall coverage without void formation. This segmented approach maintains both complete coverage and polymerization reliability.

Inventive Principle:
Principle #1Segmentation

4Manufacturing precision

If multiple processing steps are used to control thickness, then precision can be improved, but process complexity increases

Engineering Contradiction:
Improvethickness precisionVSAvoidprocessing steps
Core Design Contradiction:
Manufacturing precisionVSDevice complexity

Solution Approach 1:

The patent merges the thickness control function and the support function into a single integrated support structure. This structure simultaneously provides mechanical support, defines thickness geometry, and enables uniform material distribution. By combining multiple functions into one element, the patent achieves precise thickness control without increasing processing step complexity.

Inventive Principle:
Principle #5Merging (Combining)

Applied Scientific Principles

This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.

Function Achieved in This Case

The method achieves reproducible, cost-effective, and precisely controlled thin hydrogel matrices, enhancing signal-to-noise ratios and reducing preparation time and material usage, facilitating high-throughput profiling of biological samples.

Implementation Method 1

Methods for preparing a polymerized matrix are provided herein

Methodology Applied
Scientific EffectPolymerization: Photopolymerisation

Data Source

PatentEP4370896B1Methods for preparing polymerized matrix with controllable thickness
Publication Date: 2026.04.29 10X GENOMICS INC
  • EP4370896B1 patent drawingFigure 1A~1B
  • EP4370896B1 patent drawingFigure 2A~2C
  • EP4370896B1 patent drawingFigure 3A~3B

AI summary

The present disclosure relates in some aspects to methods for preparing a thin polymer matrix (e.g., a hydrogel matrix) having a biological sample embedded therein for in situ analysis of one or more analytes.