Thyroid Cancer Diagnosis via DNA Polymorphism Analysis

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Solution Overview

Problem

Current methods for diagnosing thyroid cancer are prone to inaccuracies, fail to determine underlying genetic or metabolic pathways, and often require subjective assessments, leading to unnecessary surgeries and treatment complications.

Innovation Solution

A method involving DNA sample analysis to detect specific polymorphisms, using binding agents and kits to diagnose malignant or benign thyroid conditions, and providing a business method for billing and result dissemination.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Measurement precision

If current diagnostic methods are used, then thyroid cancer can be detected, but the accuracy is insufficient leading to unnecessary surgeries

Engineering Contradiction:
Improvediagnostic accuracyVSAvoidfalse positive rate
Core Design Contradiction:
Measurement precisionVSReliability

Solution Approach 1:

The patent replaces subjective mechanical assessment methods with objective molecular genetic testing. By analyzing DNA polymorphisms (RET/PTC, PAX8/PPARG, BRAF mutations) rather than relying on cytological appearance, the system achieves higher diagnostic accuracy and reduces false positives, directly resolving the contradiction between measurement precision and reliability.

Inventive Principle:
Principle #28Mechanics substitution (Replace mechanical system)

Solution Approach 2:

The patent changes the diagnostic parameter from morphological characteristics to molecular genetic markers. By detecting specific DNA polymorphisms and mutation patterns, the system transforms the basis of diagnosis to achieve greater precision and reliability, eliminating the trade-off between accuracy and false positive rate.

Inventive Principle:
Principle #35Parameter changes

2Loss of information

If traditional diagnostic methods are used, then thyroid conditions can be identified, but underlying genetic pathways remain unknown

Engineering Contradiction:
Improvegenetic pathway informationVSAvoidtesting complexity
Core Design Contradiction:
Loss of informationVSDevice complexity

Solution Approach 1:

The patent extracts and analyzes specific genetic markers and polymorphisms from the complex DNA sequence. By focusing on particular regions (RET/PTC rearrangements, PAX8/PPARG fusion, BRAF V600E mutation), the system obtains valuable genetic pathway information without requiring complete genomic sequencing, thus reducing complexity while maintaining information gain.

Inventive Principle:
Principle #2Taking out (Extraction)

Solution Approach 2:

The patent segments the diagnostic approach into distinct molecular tests for different genetic pathways. By separately analyzing RET/PTC, PAX8/PPARG, and BRAF mutations, the system makes the complex genetic information manageable and interpretable, reducing the perceived complexity while uncovering underlying biological mechanisms.

Inventive Principle:
Principle #1Segmentation

3Ease of operation

If subjective assessment methods are used, then diagnosis can be made, but treatment accuracy is reduced

Engineering Contradiction:
Improvediagnosis easeVSAvoidtreatment precision
Core Design Contradiction:
Ease of operationVSManufacturing precision

Solution Approach 1:

The patent substitutes subjective cytological assessment with objective molecular diagnostics. By using DNA polymorphism detection and mutation analysis, the system provides precise, reproducible results that directly guide treatment decisions, eliminating the trade-off between ease of operation and treatment precision.

Inventive Principle:
Principle #28Mechanics substitution (Replace mechanical system)

Solution Approach 2:

The patent implements a feedback mechanism where molecular diagnostic results directly inform treatment selection. By identifying specific genetic markers (RET/PTC status, PAX8/PPARG fusion, BRAF mutations), the system provides actionable feedback that enables precision medicine approaches, improving treatment accuracy while maintaining operational simplicity through automated testing protocols.

Inventive Principle:
Principle #23Feedback

Applied Scientific Principles

This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.

Function Achieved in This Case

The method achieves a specificity and sensitivity of greater than 70% in diagnosing thyroid conditions, reducing unnecessary surgeries and improving treatment accuracy by identifying genetic markers associated with thyroid cancer.

Implementation Method 1

detecting the presence of one or more polymorphisms selected from the group consisting of the polymorphisms listed in Tables 1, 3-6, 8 or lists 1-45 or their complement

Methodology Applied
Scientific EffectSpecific binding:

Data Source

PatentUS12297503B2Methods for classification of tissue samples as positive or negative for cancer
Publication Date: 2025.05.13 VERACYTE INC
  • US12297503B2 patent drawing
  • US12297503B2 patent drawing
  • US12297503B2 patent drawing

AI summary

The present invention relates to compositions, kits, and methods for molecular profiling and cancer diagnostics, including but not limited to genomic DNA markers associated with cancer. In particular, the present invention provides molecular profiles associated with thyroid cancer, methods of determining molecular profiles, and methods of analyzing results to provide a diagnosis.