TNF-Binding Protein Isolation via Affinity Chromatography

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Solution Overview

Problem

Current methods for isolating and characterizing TNF-binding proteins (TNF-BP) face challenges such as inactivation during reductive cleavage and heterogeneity in starting materials, leading to insoluble, membrane-bound TNF-BP that are difficult to separate and purify effectively.

Innovation Solution

Development of homogenous, insoluble TNF-binding proteins and their soluble or insoluble fragments capable of binding TNF, using specific amino acid sequences and DNA sequences encoding these proteins, along with a process for their isolation involving immune affinity chromatography, ligand affinity chromatography, and HPLC, to produce recombinant proteins and antibodies for TNF binding.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Manufacturing precision

If reductive cleavage is used to separate TNF-BP from TNF complex, then TNF-BP can be isolated, but the binding protein becomes inactivated

Engineering Contradiction:
Improveisolation purityVSAvoidbinding activity
Core Design Contradiction:
Manufacturing precisionVSReliability

Solution Approach 1:

The patent extracts and isolates soluble TNF-BP from membrane extracts using affinity chromatography columns, separating the binding protein from the membrane matrix and TNF complex without requiring reductive cleavage that would inactivate the protein

Inventive Principle:
Principle #2Taking out (Extraction)

Solution Approach 2:

The patent uses affinity chromatography media as an intermediary to selectively bind and separate TNF-BP from the complex mixture of membrane proteins and TNF, enabling purification without harsh chemical treatment

Inventive Principle:
Principle #24Intermediary (Mediator)

2Reliability

If membrane-bound TNF-BP is isolated from urine, then TNF binding activity is obtained, but the material becomes heterogeneous and difficult to purify

Engineering Contradiction:
Improvebinding activityVSAvoidpurification homogeneity
Core Design Contradiction:
ReliabilityVSManufacturing precision

Solution Approach 1:

The patent focuses on isolating soluble TNF-BP with specific molecular weight characteristics (55-75 kD) that differ from membrane-bound forms, creating a homogeneous population with consistent binding properties

Inventive Principle:
Principle #3Local quality

Solution Approach 2:

The patent changes the physical state parameter from membrane-bound (insoluble) to soluble form, enabling effective purification through chromatography and resulting in homogeneous material with consistent TNF binding activity

Inventive Principle:
Principle #35Parameter changes

Applied Scientific Principles

This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.

Function Achieved in This Case

The solution enables the production of high-purity, TNF-binding proteins that maintain activity, allowing for effective isolation and characterization, and can be used in pharmaceutical applications to treat conditions mediated by TNF.

Implementation Method 1

capable of binding tumor necrosis factor-(TNF)... containing amino acid sequences of FIG. 1 or FIG. 4... proteins containing fragments of these sequences

Methodology Applied
Scientific EffectProtein binding:

Implementation Method 2

a process for the isolation of an insoluble homogenous protein capable of binding TNF... immune affinity chromatography

Methodology Applied
Scientific EffectImmune affinity chromatography: Chromatography

Implementation Method 3

TNF-BP have already been characterized... which was used as an antigen preparation for the production of monoclonal antibodies against TNF-BP

Methodology Applied
Scientific EffectLigand affinity chromatography: Chromatography

Implementation Method 4

which, in turn, was used as an antigen preparation for the production of monoclonal antibodies against TNF-BP... HPLC

Methodology Applied
Scientific EffectHigh performance liquid chromatography: Chromatography

Data Source

PatentUS8163522B1Human TNF receptor
Publication Date: 2012.04.24 F HOFFMANN LA ROCHE INC
  • US8163522B1 patent drawing
  • US8163522B1 patent drawing
  • US8163522B1 patent drawing

AI summary

The present invention is concerned with non-soluble proteins and soluble or insoluble fragments thereof, which bind TNF, in homogeneous form, as well as their physiologically compatible salts, especially those proteins having a molecular weight of about 55 or 75 kD (non-reducing SDS-PAGE conditions), a process for the isolation of such proteins, antibodies against such proteins, DNA sequences which code for non-soluble proteins and soluble or non-soluble fragments thereof, which bind TNF, as well as those which code for proteins comprising partly of a soluble fragment, which binds TNF, and partly of all domains except the first of the constant region of the heavy chain of human immunoglobulins and the recombinant proteins coded thereby as well as a process for their manufacture using transformed pro- and eukaryotic host cells.