Toxin-Antitoxin Nucleic Acid Constructs for Selective Cancer Cell Killing

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Solution Overview

Problem

Current cancer treatments, particularly for colorectal cancer with KRAS mutations, face challenges due to resistance to anti-EGFR therapies and limited specificity in targeting tumor cells, leading to adverse effects on normal cells.

Innovation Solution

A nucleic acid construct system comprising a toxin operatively linked to a cancer-associated signaling responsive enhancer element and an anti-toxin with a stronger promoter, where the toxin is provided at a higher concentration than the anti-toxin, exploiting hyperactive RAS pathways in cancer cells to induce selective cell death while sparing normal cells.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Reliability

If anti-EGFR therapies are used to treat colorectal cancer, then treatment effectiveness is improved for some patients, but resistance develops in patients with KRAS mutations

Engineering Contradiction:
Improvetreatment effectivenessVSAvoidresistance to therapy
Core Design Contradiction:
ReliabilityVSAdaptability or versatility

Solution Approach 1:

The patent changes the therapeutic parameter from targeting EGFR (which fails in KRAS-mutated cancers) to targeting the RAS pathway directly by exploiting its hyperactivity. This parameter change allows the therapy to be effective specifically in cancers with activated RAS signaling, overcoming the resistance problem that plagues anti-EGFR therapies in this patient population.

Inventive Principle:
Principle #35Parameter changes

Solution Approach 2:

The patent applies local quality by creating a therapy that specifically targets cells with hyperactive RAS pathways while sparing normal cells with wild-type RAS. The selective toxicity is achieved through the dual-promoter system that responds differently to RAS signaling intensity, allowing the same therapeutic agent to have different effects in different cell types based on their RAS activity level.

Inventive Principle:
Principle #3Local quality

2Reliability

If gene therapy is used to target cancer cells, then selective tumor cell destruction is achieved, but normal cells are also affected

Engineering Contradiction:
Improveselective tumor cell destructionVSAvoiddamage to normal tissues
Core Design Contradiction:
ReliabilityVSObject-affected harmful factors

Solution Approach 1:

The patent implements local quality through a dual-promoter system where the toxin gene is controlled by a cancer-specific promoter (responding to hyperactive RAS) and the anti-toxin gene is controlled by a constitutive promoter. This creates a local difference in gene expression patterns that allows selective toxicity: cancer cells with the transgene express only the toxin, while normal cells expressing both transgenes produce the anti-toxin that neutralizes it.

Inventive Principle:
Principle #3Local quality

Solution Approach 2:

The anti-toxin acts as an intermediary that mediates protection of normal cells. When both toxin and anti-toxin are expressed (as in normal cells receiving the dual construct), the anti-toxin neutralizes the toxin's harmful effects. This intermediary mechanism allows the therapy to be delivered systemically while still protecting normal tissues from damage.

Inventive Principle:
Principle #24Intermediary (Mediator)

3Productivity

If toxin expression is increased to enhance cancer cell killing, then tumor cell death is improved, but toxicity to normal cells increases

Engineering Contradiction:
Improvecancer cell killing efficiencyVSAvoidtoxicity to normal cells
Core Design Contradiction:
ProductivityVSObject-affected harmful factors

Solution Approach 1:

The patent uses local quality by creating spatial and functional differentiation in toxin expression. The toxin is expressed at high levels only in cells where the cancer-specific promoter is activated (hyperactive RAS cells), while in normal cells the same promoter remains inactive. The anti-toxin is expressed constitutively in all cells, providing a protective buffer that prevents systemic toxicity while allowing high local toxin concentrations in cancer cells.

Inventive Principle:
Principle #3Local quality

Solution Approach 2:

The patent applies preliminary anti-action by pre-equipping all cells with the anti-toxin through the constitutive promoter. This creates a protective mechanism in advance that neutralizes any toxin that might be produced, preventing harm to normal cells. In cancer cells, the overwhelming toxin production from the activated promoter exceeds the protective capacity of the anti-toxin, resulting in selective cell death.

Inventive Principle:
Principle #9Preliminary anti-action

Applied Scientific Principles

This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.

Function Achieved in This Case

The system achieves significant cell death in cancer cells with hyperactive RAS pathways, demonstrating a novel and effective gene therapy approach that selectively targets and kills cancer cells while protecting normal cells, as shown by substantial tumor shrinkage without side effects.

Implementation Method 1

MazF-induced toxicity is executed by blocking de novo protein synthesis through its endoribonuclease activity, termed mRNA interferases

Methodology Applied
Scientific EffectEndoribonuclease activity: Enzyme

Implementation Method 2

The antitoxin interferes with the lethal action of the toxin and neutralizes its toxicity

Methodology Applied
Scientific EffectToxin-antitoxin interaction:

Implementation Method 3

a second promoter being stronger than the first promoter

Methodology Applied
Scientific EffectTranscriptional regulation:

Implementation Method 4

at least one cancer-associated proliferative signaling responsive enhancer element

Methodology Applied
Scientific EffectSignal-responsive gene expression:

Data Source

PatentUS11219636B2Compositions and methods for treating cancer
Publication Date: 2022.01.11 ARBER NADIR
  • US11219636B2 patent drawing
  • US11219636B2 patent drawing
  • US11219636B2 patent drawing

AI summary

Provided are nucleic acid constructs and systems which comprise (i) a first nucleic acid construct encoding a toxin operatively linked to a first promoter and at least one cancer-associated signaling responsive enhancer element; and (ii) a second nucleic acid construct encoding an anti-toxin operatively linked to a second promoter, the second promoter being stronger than the first promoter.Also provided are pharmaceutical compositions comprising same and methods of using same for treating cancer.