Dinuclear Triazacyclononane Complexes for Phosphate Ester Detection

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Solution Overview

Problem

Existing methods for studying phosphorylation and dephosphorylation reactions, particularly in the context of protein function and disease, are limited by the low water solubility of synthetic ligands used in laboratory studies, which hampers their utility in understanding biological processes and detecting phosphate esters.

Innovation Solution

Development of water-soluble ligands like 1,3-bis(1,4,7-triazacyclonon-1-yl)-2-hydroxypropane and their conjugates that form dinuclear metal complexes, enabling the detection of phosphate esters through MALDI-TOF mass spectrometry and dye displacement methods, and their use in forming functionalized polyacrylamide gels for electrophoretic separations.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Reliability

If synthetic organic ligands are used to form dimetallic complexes for catalyzing dephosphorylation reactions, then the catalytic function is achieved, but the water solubility is low which limits utility in laboratory studies

Engineering Contradiction:
Improvecatalytic functionVSAvoidwater solubility
Core Design Contradiction:
ReliabilityVSEase of operation

Solution Approach 1:

The patent modifies the ligand structure by introducing hydrophilic groups (such as carboxylic acid, hydroxyl, or amino groups) to change the solubility parameters of the ligand. This allows the ligand to maintain its catalytic function while achieving water solubility, thereby resolving the contradiction between catalytic reliability and ease of operation in aqueous environments

Inventive Principle:
Principle #35Parameter changes

Solution Approach 2:

The patent creates composite ligand structures that combine hydrophobic regions (for maintaining catalytic activity and metal binding) with hydrophilic regions (for water solubility). This composite approach allows the ligand to simultaneously achieve both catalytic function and water solubility, resolving the technical contradiction

Inventive Principle:
Principle #40Composite materials

2Difficulty of detecting and measuring

If conventional ligands are used for detecting phosphate esters, then the detection capability is limited, but the differentiation and detection sensitivity of phosphate esters is insufficient

Engineering Contradiction:
Improvedetection capabilityVSAvoiddifferentiation sensitivity
Core Design Contradiction:
Difficulty of detecting and measuringVSMeasurement precision

Solution Approach 1:

The patent employs ligands that undergo color changes or fluorescence changes upon binding to phosphate esters, enabling visual or instrumental detection. This allows for sensitive differentiation of phosphate esters from other compounds, resolving the contradiction between detection capability and measurement precision

Inventive Principle:
Principle #32Color changes

Solution Approach 2:

The patent uses dimetallic complexes as intermediary agents that specifically bind to phosphate esters, enhancing the detection signal. The metal ions act as mediators that amplify the interaction between the ligand and phosphate esters, improving both detection capability and differentiation sensitivity

Inventive Principle:
Principle #24Intermediary (Mediator)

3Device complexity

If ligands are used without conjugation, then the structure is simple, but the functional versatility for additional applications is limited

Engineering Contradiction:
Improveligand structureVSAvoidfunctional versatility
Core Design Contradiction:
Device complexityVSAdaptability or versatility

Solution Approach 1:

The patent designs ligands with multiple functional groups that can perform different functions: metal binding, water solubility enhancement, and conjugation sites for attaching various moieties (fluorescent tags, biotin, etc.). This multi-functionality allows the same ligand scaffold to be used in multiple applications, resolving the contradiction between structural simplicity and functional versatility

Inventive Principle:
Principle #6Universality (Multi-functionality)

Solution Approach 2:

The patent divides the ligand into distinct functional segments: a core structure for metal binding, hydrophilic groups for solubility, and reactive groups for conjugation. This segmentation allows independent optimization of each function while maintaining overall simplicity of the modular design

Inventive Principle:
Principle #1Segmentation

Applied Scientific Principles

This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.

Function Achieved in This Case

The water-soluble ligands and their complexes enhance the detection and differentiation of phosphate esters, allowing for improved analysis of phosphorylation status in biological samples and facilitating the identification and quantification of phosphoproteins, thereby aiding in exploring disease mechanisms and drug design.

Implementation Method 1

dinuclear metal complexes of the ligands or dinuclear metal complexes of the conjugates of the ligands, by mixing such a complex with the sample in a suitable matrix to form positively charged dinuclear metal complexes of the phosphate esters

Methodology Applied
Scientific EffectMetal coordination:

Implementation Method 2

the dinuclear metal complexes are further complexed with a chromophoric compound that has two key characteristics—(1) the chromophoric compound has a lower affinity to the metal-charged ligand (or conjugate of the ligand) than do the phosphate esters, i.e., the phosphate esters bind more strongly to the ligand and will displace the chromophoric compound in the complex upon contact; and (2) the chromophoric compound has a different absorbance or fluorescence spectrum when bound than when unbound

Methodology Applied
Scientific EffectDye displacement:

Implementation Method 3

their use in forming functionalized polyacrylamide gels for electrophoretic separations

Methodology Applied
Scientific EffectPolymerization: Photopolymerisation

Implementation Method 4

Certain metalloenzymes that contain two metal ions are known to catalyze dephosphorylation reactions, in particular the hydrolysis of phosphate diesters

Methodology Applied
Scientific EffectHydrolysis: Hydrolysis

Data Source

PatentUS20120058565A1Conjugates of 1,4,7-triazacyclononanes, dinuclear metal complexes of such conjugates, and methods of use for both 1,4,7-triazacyclononanes and conjugates
Publication Date: 2012.03.08 BIO RAD LABORATORIES INC
  • US20120058565A1 patent drawing
  • US20120058565A1 patent drawing
  • US20120058565A1 patent drawing

AI summary

Conjugates of 1,3-bis(1,4,7-triazacyclonon-1-yl)-2-hydroxypropanes with a variety of conjugating members are used in the formation of dinuclear metal complexes which bind to phosphate esters. By virtue of their conjugated forms, the complexes are incorporated into chromatographic media, affinity binding reagents, and dyes, which make the complexes useful in a wide range of assays, separations, and purifications. In addition, dinuclear metal complexes of 1,3-bis(1,4,7-triazacyclonon-1-yl)-2-hydroxypropanes that are not so conjugated are used in the detection of phosphate esters of biological species by either MALDI-TOF mass spectrometry or by dye displacement.