N-cyanopyrrolidine USP30 Inhibitors Mitochondrial Dysfunction

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Solution Overview

Problem

There is a need for safe, alternative, and improved methods and compositions for the treatment or prevention of conditions involving mitochondrial dysfunction, cancer, and fibrosis, as existing treatments have limitations in efficacy and safety, particularly for targeting USP30, a deubiquitylating enzyme implicated in these diseases.

Innovation Solution

Development of specific USP30 inhibitors, such as N-cyanopyrrolidines, which are designed to maximize potency, selectivity, and safety profiles, including pharmacokinetic properties and minimal off-target effects, to effectively inhibit USP30 activity in mitochondrial dysfunction, cancer, and fibrosis.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Reliability

If existing treatments are used for mitochondrial dysfunction, cancer, and fibrosis, then treatment coverage is provided, but efficacy and safety are limited

Engineering Contradiction:
ImproveefficacyVSAvoidsafety limitations
Core Design Contradiction:
ReliabilityVSObject-affected harmful factors

Solution Approach 1:

The patent employs parameter changes by systematically modifying the chemical structure of USP30 inhibitors (changing molecular parameters such as substituent groups, ring structures, and stereochemistry) to optimize the balance between efficacy and safety. This is evident in the extensive description of formula (I) variations and their differential effects on USP30 inhibition potency and selectivity, thereby improving therapeutic reliability while minimizing harmful effects.

Inventive Principle:
Principle #35Parameter changes

Solution Approach 2:

The patent applies local quality by designing inhibitors with specific structural features targeted at particular regions of the USP30 enzyme active site. The detailed specification of substituent positions (R1, R2, R3, R4, R5, R6, R7, R8, R9, R10, R11, R12) and their individual contributions to binding affinity and selectivity demonstrates how localized structural modifications enhance efficacy without compromising safety.

Inventive Principle:
Principle #3Local quality

2Reliability

If USP30 inhibitors are designed to maximize potency, then therapeutic effectiveness improves, but selectivity and safety profiles become more challenging to achieve

Engineering Contradiction:
ImprovepotencyVSAvoidselectivity optimization
Core Design Contradiction:
ReliabilityVSDevice complexity

Solution Approach 1:

The patent applies segmentation by dividing the inhibitor molecule into distinct functional segments (core pyrrolidine structure, oxazole/oxadiazole moiety, substituent groups R1-R12) that can be independently optimized. This modular approach allows systematic enhancement of potency through specific segment modifications while maintaining overall selectivity, as evidenced by the structure-activity relationship data presented for different substituent combinations.

Inventive Principle:
Principle #1Segmentation

Solution Approach 2:

The patent uses intermediary structures (specific substituent groups and linking moieties) that mediate between the core inhibitor structure and the USP30 binding site. These intermediary elements (such as the oxazole/oxadiazole ring system and various substituent patterns) facilitate high-affinity binding while providing a buffer that maintains selectivity, resolving the contradiction between potency and selectivity optimization.

Inventive Principle:
Principle #24Intermediary (Mediator)

3Adaptability or versatility

If conventional treatments are used, then broad disease coverage is achieved, but off-target effects and side effects occur

Engineering Contradiction:
Improvedisease coverageVSAvoidoff-target effects
Core Design Contradiction:
Adaptability or versatilityVSObject-generated harmful factors

Solution Approach 1:

The patent converts the potential harm of off-target effects into benefit by designing inhibitors with high USP30 selectivity that specifically target the mitochondrial deubiquitylating enzyme. The extensive structure-activity relationship analysis and selectivity data demonstrate how the molecular design converts what would be harmful off-target binding into beneficial on-target specificity, eliminating side effects while maintaining broad applicability to mitochondrial dysfunction, cancer, and fibrosis.

Inventive Principle:
Principle #22Blessing in disguise (Convert harm into benefit)

Data Source

PatentEP4157834B1N-(1-cyano-pyrrolidin-3-yl)-5-(3-(trifluoromethyl)phenyl)oxazole-2-carboxamide derivatives and the corresponding oxadiazole derivatives as USP30 inhibitors for the treatment of mitochondrial dysfunction
Publication Date: 2024.07.03 MISSION THERAPEUTICS LTD
  • EP4157834B1 patent drawing
  • EP4157834B1 patent drawing
  • EP4157834B1 patent drawing

AI summary

The present invention relates to a class of N-cyanopyrrolidines with activity as inhibitors of the deubiquitylating enzyme USP30, having utility in a variety of therapeutic areas, including conditions involving mitochondrial dysfunction, cancer and fibrosis: Formula (I), Formula (II)..