Vector Set for Transposase Activity Measurement

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Solution Overview

Problem

Current methods for confirming the activity of transposase enzymes, which are crucial for incorporating DNA sequences into genomes, lack efficiency and accuracy, making it difficult to assess their functionality effectively.

Innovation Solution

A vector set comprising a first vector with a transposase target sequence, a promoter sequence, and a reporter gene, and a second vector with transposase recognition sequences and an enhancer sequence, allowing for the measurement of transposase activity by detecting reporter protein expression levels.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Measurement precision

If conventional methods are used to confirm transposase activity, then the process is simple, but the accuracy and reliability of activity assessment is insufficient

Engineering Contradiction:
Improvetransposase activity assessment accuracyVSAvoidmeasurement system complexity
Core Design Contradiction:
Measurement precisionVSDevice complexity

Solution Approach 1:

The patent introduces a reporter gene as an intermediary element that converts transposase activity into a measurable signal. The reporter gene is placed between transposase recognition sequences, and when transposase successfully cuts and reinserts the DNA, the reporter gene is expressed and produces a detectable signal (such as fluorescence or luminescence). This intermediary mechanism enables accurate transposase activity assessment without directly measuring the enzyme itself.

Inventive Principle:
Principle #24Intermediary (Mediator)

Solution Approach 2:

The patent replaces direct mechanical/enzymatic measurement of transposase activity with an optical or chemical detection system. Instead of attempting to measure the physical cutting and pasting action of the transposase enzyme directly, the system uses reporter gene expression to generate optical signals (fluorescence, luminescence) or colorimetric changes that can be detected by standard instrumentation, thereby substituting a mechanical measurement with a more precise physical detection method.

Inventive Principle:
Principle #28Mechanics substitution (Replace mechanical system)

2Productivity

If conventional methods are used to confirm transposase activity, then the procedure is straightforward, but the speed and efficiency of assessment is low

Engineering Contradiction:
Improveactivity assessment speedVSAvoidactivity measurement accuracy
Core Design Contradiction:
ProductivityVSMeasurement precision

Solution Approach 1:

The patent replaces slow, multi-step biochemical assays with rapid optical or colorimetric detection. The reporter gene system allows for high-throughput screening where multiple samples can be assessed simultaneously using plate readers or other automated detection systems, dramatically increasing productivity while maintaining or improving measurement precision through standardized detection protocols.

Inventive Principle:
Principle #28Mechanics substitution (Replace mechanical system)

Solution Approach 2:

The measurement system is designed to be self-indicating through the reporter gene expression. The system automatically generates its own detection signal through the biological expression machinery of the host cell, eliminating the need for complex external measurement procedures. The reporter gene product (such as a fluorescent protein or enzymatic activity) serves as its own detector, enabling rapid assessment without extensive manual intervention.

Inventive Principle:
Principle #25Self-service

3Measurement precision

If a vector set with reporter genes is used to measure transposase activity, then the measurement precision is improved, but the device complexity increases

Engineering Contradiction:
Improvetransposase activity detection accuracyVSAvoidvector system complexity
Core Design Contradiction:
Measurement precisionVSDevice complexity

Solution Approach 1:

The patent designs the vector system with multi-functionality to reduce overall complexity. The same vector backbone and reporter gene construct can be used to assess different transposase variants by simply changing the recognition sequences flanking the reporter gene. The promoter regions can drive multiple different reporter genes (fluorescent proteins, luciferases, colorimetric enzymes), allowing a single vector design to serve multiple measurement purposes across different experimental contexts.

Inventive Principle:
Principle #6Universality (Multi-functionality)

Applied Scientific Principles

This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.

Function Achieved in This Case

Enables rapid and accurate assessment of transposase activity, facilitating the evaluation of both cutting and incorporating activities, thereby ensuring the enzyme's functionality and suitability for genome editing applications.

Implementation Method 1

a transposase is used. The transposase is an enzyme having an activity of cutting out a DNA sequence in which a transposase recognition sequence is arranged at both ends, and an activity of inserting the cut-out DNA sequence into a transposase target sequence on a genome

Methodology Applied
Scientific EffectTransposase enzyme activity: Enzyme

Implementation Method 2

A vector set comprising a first vector with a transposase target sequence, a promoter sequence, and a reporter gene, and a second vector with transposase recognition sequences and an enhancer sequence, allowing for the measurement of transposase activity by detecting reporter protein expression levels

Methodology Applied
Scientific EffectReporter protein expression: Enzyme

Data Source

PatentUS20230102794A1Vector set for measuring transposase activity, kit, transposase activity measuring method, and cell separation method
Publication Date: 2023.03.30 KK TOSHIBA
  • US20230102794A1 patent drawing
  • US20230102794A1 patent drawing
  • US20230102794A1 patent drawing

AI summary

According to one embodiment, a vector set includes a first vector and a second vector. The first vector includes a transposase target sequence, a first promoter sequence ligated to downstream of the transposase target sequence, and a first reporter gene ligated to downstream of the first promoter sequence. The second vector includes a 5′-side transposase recognition sequence, a 3′-side transposase recognition sequence, and a first enhancer sequence arranged therebetween.