Yeast Strain Engineering for Human-Like O-Glycosylation

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Solution Overview

Problem

Therapeutic proteins produced in yeast systems often provoke an immunogenic response in humans due to structural differences in O-glycosylation pathways, leading to reduced effectiveness and potential adverse effects upon repeated administration.

Innovation Solution

Engineering lower eukaryotic host cells, such as yeast, to produce glycoproteins with human-like O-glycosylation patterns by knocking out endogenous O-glycosylation genes and expressing human O-linked glycosylation enzymes, resulting in recombinant glycoproteins with improved immunogenicity and pharmacokinetic properties.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Productivity

If yeast systems are used to produce therapeutic proteins, then production efficiency and cost-effectiveness are improved, but immunogenicity increases due to fungal O-glycosylation patterns

Engineering Contradiction:
Improveproduction efficiencyVSAvoidimmunogenicity
Core Design Contradiction:
ProductivityVSObject-affected harmful factors

Solution Approach 1:

The patent applies parameter changes by modifying the glycosylation parameters of the yeast system. Specifically, it alters the O-glycosylation pattern from fungal type (with alpha-1,3-linked mannose residues) to human-like type (with beta-1,4-linked galactose and sialic acid residues) by introducing human glycosyltransferase genes (beta-1,4-galactosyltransferase and alpha-2,6-sialyltransferase) into the yeast expression system. This parameter change resolves the contradiction by maintaining high productivity while eliminating immunogenicity.

Inventive Principle:
Principle #35Parameter changes

2Object-affected harmful factors

If fungal O-glycosylation is reduced or eliminated, then immunogenicity is reduced, but structural differences between lower eukaryotes and mammals persist

Engineering Contradiction:
ImproveimmunogenicityVSAvoidglycosylation pathway compatibility
Core Design Contradiction:
Object-affected harmful factorsVSAdaptability or versatility

Solution Approach 1:

The patent uses an intermediary approach by introducing human glycosyltransferase enzymes as mediators into the yeast system. These enzymes (beta-1,4-galactosyltransferase and alpha-2,6-sialyltransferase) act as intermediaries that bridge the gap between fungal and human glycosylation pathways, enabling the yeast to produce human-like O-glycosylated proteins while maintaining the ease of fungal expression systems.

Inventive Principle:
Principle #24Intermediary (Mediator)

Solution Approach 2:

The patent creates a composite glycosylation system by combining fungal yeast expression machinery with human glycosyltransferase enzymes. This composite approach allows the system to maintain the productive capabilities of yeast while acquiring human-like glycosylation capabilities, resolving the adaptability issue.

Inventive Principle:
Principle #40Composite materials

3Duration of action of moving object

If human-like O-glycosylation is introduced into yeast, then bioavailability and serum half-life are improved, but system complexity increases

Engineering Contradiction:
Improveserum half-lifeVSAvoidgenetic engineering complexity
Core Design Contradiction:
Duration of action of moving objectVSDevice complexity

Solution Approach 1:

The patent applies preliminary action by pre-introducing and expressing human glycosyltransferase genes in the yeast system before producing the therapeutic protein. This preliminary establishment of human-like glycosylation capability ensures that when the therapeutic protein is produced, it automatically receives the correct human-like O-glycosylation, improving serum half-life without requiring post-production modifications.

Inventive Principle:
Principle #10Preliminary action

Applied Scientific Principles

This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.

Function Achieved in This Case

The approach significantly reduces immunogenicity and enhances bioactivity of therapeutic proteins by mimicking human O-glycosylation, leading to improved bioavailability and serum half-life, facilitating better in vivo drug activity.

Implementation Method 1

the disclosure is concerned with lower eukaryotic cells, such as yeast strains, genetically engineered to produce glycoproteins having humanized O-glycosylation

Methodology Applied
Scientific EffectO-glycosylation: Chemical Bonding

Implementation Method 2

expressing human O-linked glycosylation enzymes, resulting in recombinant glycoproteins with improved immunogenicity and pharmacokinetic properties

Methodology Applied
Scientific EffectEnzyme catalysis: Enzyme

Data Source

PatentEP2678440B1Yeast strain for the production of proteins with modified o-glycosylation
Publication Date: 2018.05.23 MERCK SHARP & DOHME CORP
  • EP2678440B1 patent drawingFigure 1
  • EP2678440B1 patent drawingFigure 2A~2B
  • EP2678440B1 patent drawingFigure 3A~3B

AI summary

Lower eukaryotic host cells have been recombinantly engineered to produce glycoprotein having human-like O-glycosylation. The glycoproteins are useful for the production of glycoprotein compositions with advantages for the production of human therapeutics.