SCODA Particle Concentration via ZIFE Extraction

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Solution Overview

Problem

Current methods for concentrating DNA and similar materials from contaminated solutions are inefficient due to clogging issues with filtration technologies and the high cost of PCR, and conventional electrophoresis techniques are limited by the need for electrodes that can damage particles and require high electric field gradients.

Innovation Solution

The application of a time-varying driving field and a mobility-varying field simultaneously, known as SCODA (Synchronous Coefficient of Drag Alteration), which causes particles to move and concentrate without the need for electrodes, using zero-integrated-field electrophoresis (ZIFE) to extract particles from a medium into a buffer reservoir.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Quantity of substance

If filtration is used to concentrate DNA, then DNA concentration is improved, but filters are easily clogged with debris reducing reliability

Engineering Contradiction:
ImproveDNA concentrationVSAvoidfilter clogging
Core Design Contradiction:
Quantity of substanceVSReliability

Solution Approach 1:

The patent replaces the mechanical filtration system with an electrophoresis-based system using a comb electrode array that generates non-uniform electric fields. Instead of physically filtering DNA through membranes that clog, the system uses electric field-driven particle manipulation to concentrate DNA at specific locations (electrode tips or between electrodes) without physical contact, eliminating clogging issues while achieving high concentration factors.

Inventive Principle:
Principle #28Mechanics substitution (Replace mechanical system)

2Quantity of substance

If conventional electrophoresis is used to concentrate particles, then particle concentration is improved, but electrodes cause electrochemical damage to particles

Engineering Contradiction:
Improveparticle concentrationVSAvoidelectrode damage
Core Design Contradiction:
Quantity of substanceVSObject-affected harmful factors

Solution Approach 1:

The patent introduces a dielectric medium (such as agarose gel or liquid solution with appropriate buffer) as an intermediary between the electrodes and the DNA particles. This intermediary allows the electric field to be transmitted for particle manipulation while preventing direct electrochemical interactions between the electrodes and DNA. The comb electrode design with insulated sides further isolates the electric field to non-contact regions, minimizing electrode damage to particles.

Inventive Principle:
Principle #24Intermediary (Mediator)

3Quantity of substance

If conventional electrophoresis is used to concentrate particles, then particle concentration is improved, but high electric field gradients are required increasing energy consumption

Engineering Contradiction:
Improveparticle concentrationVSAvoidelectric field energy
Core Design Contradiction:
Quantity of substanceVSUse of energy by moving object

Solution Approach 1:

The patent employs comb electrodes with non-uniform spacing that create localized regions of high electric field gradient only where needed (at electrode tips or in specific gaps), rather than requiring high gradients throughout the entire sample volume. This localized field concentration achieves effective particle focusing with lower overall energy consumption compared to conventional uniform high-gradient electrophoresis systems.

Inventive Principle:
Principle #3Local quality

4Manufacturing precision

If conventional electrophoresis is used for particle separation, then separation capability is improved, but the linear separation limitation reduces adaptability

Engineering Contradiction:
Improveseparation precisionVSAvoidseparation geometry
Core Design Contradiction:
Manufacturing precisionVSAdaptability or versatility

Solution Approach 1:

The patent transitions from conventional one-dimensional linear electrophoresis separation to two-dimensional or three-dimensional particle manipulation using comb electrode arrays. The non-uniform electric fields generated by the comb geometry enable particles to be focused, separated, and concentrated in multiple spatial dimensions (laterally between electrode tips, vertically toward electrode surfaces, and in complex trajectories), providing enhanced separation capabilities and geometric flexibility beyond linear paths.

Inventive Principle:
Principle #17Another dimension (Dimensionality change)

Applied Scientific Principles

This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.

Function Achieved in This Case

This method effectively concentrates particles in a controlled manner, avoiding electrode-induced damage and achieving high concentration factors without the limitations of traditional electrophoresis, enabling efficient extraction and purification of DNA and other charged particles.

Implementation Method 1

Electrophoresis involves directing the movement of charged particles in a medium, such as a gel or liquid solution by applying an electric field across the medium

Methodology Applied
Scientific EffectElectrophoresis: Electrophoresis

Implementation Method 2

Pohl, H. A., Dielectrophoresis: The Behavior of Neutral Matter in Nonuniform Electric Fields Cambridge University Press, Cambridge, UK 19.78

Methodology Applied
Scientific EffectDielectrophoresis:

Implementation Method 3

applying zero-integrated-field electrophoresis (ZIFE) to the buffer-gel interface to direct the particles in the gel into the extraction reservoir

Methodology Applied
Scientific EffectElectrophoresis: Electrophoresis

Data Source

PatentUS8133371B2Scodaphoresis and methods and apparatus for moving and concentrating particles
Publication Date: 2012.03.13 THE UNIV OF BRITISH COLUMBIA
  • US8133371B2 patent drawing
  • US8133371B2 patent drawing
  • US8133371B2 patent drawing

AI summary

Methods and apparatus for moving and concentrating particles apply an alternating driving field and an alternating field that alters mobility of the particles. The driving field and mobility-varying field are correlated with one another. The methods and apparatus may be used to concentrate DNA or RNA in a medium, for example. Methods and apparatus for extracting particles from one medium into another involve applying an alternating driving field that causes net drift of the particles from the first medium into the second medium but no net drift of the particles in the second medium.