Abasic Nucleotide RNA Duplexes for Sustained Gene Silencing

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Solution Overview

Problem

Current oligonucleotide compounds for therapeutic gene silencing face challenges in effectively targeting and inhibiting specific gene expression in cells, particularly in achieving sustained suppression of target genes in tissues like the liver.

Innovation Solution

Development of nucleic acid compounds, specifically RNA molecules with abasic nucleotides and reversed internucleotide linkages, that form duplex structures with complementary strands to inhibit gene expression, and conjugates with ligand moieties for enhanced cellular uptake and distribution.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Duration of action of moving object

If traditional oligonucleotide compounds are used for gene silencing, then gene expression inhibition is achieved, but the duration of action is insufficient and sustained suppression is not maintained

Engineering Contradiction:
Improveduration of gene silencingVSAvoidsustained suppression efficacy
Core Design Contradiction:
Duration of action of moving objectVSReliability

Solution Approach 1:

The patent modifies the chemical parameters of oligonucleotide compounds by incorporating abasic nucleotides and reversed internucleotide linkages, which fundamentally changes the molecular structure and properties. This enables sustained suppression of target gene expression in liver tissues, resolving the contradiction between duration of action and reliability of gene silencing efficacy

Inventive Principle:
Principle #35Parameter changes

Solution Approach 2:

The invention creates composite oligonucleotide structures by combining abasic nucleotides with reversed linkages and conjugating them to ligand moieties. This composite approach enhances both the duration and reliability of gene silencing, allowing sustained therapeutic effects in difficult-to-treat tissues like the liver

Inventive Principle:
Principle #40Composite materials

2Measurement precision

If oligonucleotide compounds are designed for specific gene targeting, then gene silencing specificity is improved, but the compounds fail to achieve effective distribution and uptake in target tissues

Engineering Contradiction:
Improvegene targeting specificityVSAvoidcellular uptake and tissue distribution
Core Design Contradiction:
Measurement precisionVSEase of operation

Solution Approach 1:

The patent introduces ligand moieties as intermediary components that facilitate the interaction between oligonucleotide compounds and target cells. These ligands act as mediators that enhance cellular uptake and tissue distribution while maintaining the specific gene-targeting capability of the oligonucleotide sequence, thereby resolving the contradiction between targeting precision and delivery efficiency

Inventive Principle:
Principle #24Intermediary (Mediator)

3Ease of manufacture

If conventional oligonucleotide structures are used, then synthesis is relatively simple, but therapeutic efficacy in treating diseases is insufficient

Engineering Contradiction:
Improvesynthesis complexityVSAvoidtherapeutic efficacy
Core Design Contradiction:
Ease of manufactureVSReliability

Solution Approach 1:

The patent implements parameter changes in the oligonucleotide structure by incorporating abasic nucleotides and reversed linkages, which enhance therapeutic efficacy while maintaining feasibility of synthesis. The modified structures provide improved stability and activity, resolving the contradiction between manufacturing simplicity and therapeutic effectiveness

Inventive Principle:
Principle #35Parameter changes

Applied Scientific Principles

This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.

Function Achieved in This Case

These compounds demonstrate effective and sustained suppression of target gene expression in both cancer cells and primary human hepatocytes, showing promise for therapeutic applications by reducing mRNA levels and maintaining efficacy over extended periods.

Implementation Method 1

comprising at least one duplex region that comprises at least a portion of a first strand and at least a portion of a second strand that is at least partially complementary to the first strand

Methodology Applied
Scientific EffectBase pairing: Chemical Bonding

Data Source

PatentUS20230407311A1Nucleic acids containing abasic nucleotides
Publication Date: 2023.12.21 E THERAPEUTICS LTD
  • US20230407311A1 patent drawing
  • US20230407311A1 patent drawing
  • US20230407311A1 patent drawing

AI summary

The present invention relates to nucleic acid molecules for use in the treatment or prevention of disease.