Reducing Amidated Amino Acids in Cell Lines for Protein Expression

Resolve Bottlenecks,
Find Innovative Solutions
Generate Solutions

Solution Overview

Problem

The production of proteins, particularly biopharmaceuticals, is challenging due to the complexity of controlling post-translational modifications in living cell cultures, leading to undesired heterogeneity and potential immunogenicity issues caused by amidated amino acids, which can affect protein activity and consistency.

Innovation Solution

The development of cell lines with reduced peptide amidation activity through methods such as gene silencing, gene knock-down, or expression of dysfunctional enzymes to inhibit peptide amidation, allowing for controlled post-translational modifications and improved protein production processes.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Productivity

If peptide amidation activity is high in cell lines, then protein production yield is improved, but protein heterogeneity and immunogenicity increase

Engineering Contradiction:
Improveprotein production yieldVSAvoidprotein homogeneity
Core Design Contradiction:
ProductivityVSManufacturing precision

Solution Approach 1:

The patent applies local quality by specifically targeting and modifying the peptide amidation function in cell lines through genetic engineering. By introducing mutated versions of peptidylglycine alpha-amidating monooxygenase with altered catalytic activity, the invention creates a localized functional change in the cell's post-translational modification capability, allowing high protein yield while controlling amidation-related heterogeneity

Inventive Principle:
Principle #3Local quality

Solution Approach 2:

The patent changes the catalytic parameters of the peptide amidation enzyme by using mutated forms of PAM with different activity levels. By adjusting the enzymatic activity parameter through genetic modification, the invention achieves optimal balance between protein production efficiency and product homogeneity, reducing unwanted amidated variants while maintaining yield

Inventive Principle:
Principle #35Parameter changes

2Productivity

If peptide amidation activity is high in cell lines, then protein production yield is improved, but immunogenicity and safety risks increase

Engineering Contradiction:
Improveprotein production yieldVSAvoidimmunogenicity
Core Design Contradiction:
ProductivityVSObject-affected harmful factors

Solution Approach 1:

The patent applies local quality by specifically targeting and modifying the peptide amidation function in cell lines through genetic engineering. By introducing mutated versions of peptidylglycine alpha-amidating monooxygenase with altered catalytic activity, the invention creates a localized functional change in the cell's post-translational modification capability, allowing high protein yield while controlling amidation-related heterogeneity

Inventive Principle:
Principle #3Local quality

Solution Approach 2:

The patent changes the catalytic parameters of the peptide amidation enzyme by using mutated forms of PAM with different activity levels. By adjusting the enzymatic activity parameter through genetic modification, the invention achieves optimal balance between protein production efficiency and product homogeneity, reducing unwanted amidated variants while maintaining yield

Inventive Principle:
Principle #35Parameter changes

3Manufacturing precision

If peptide amidation activity is reduced in cell lines, then protein homogeneity is improved, but production yield may decrease

Engineering Contradiction:
Improveprotein homogeneityVSAvoidprotein production yield
Core Design Contradiction:
Manufacturing precisionVSProductivity

Solution Approach 1:

The patent applies partial action by using mutated PAM enzymes with reduced but not completely eliminated amidation activity. This partial inhibition strategy allows sufficient protein production while adequately controlling heterogeneity, avoiding the complete loss of yield that would result from total enzyme inactivation

Inventive Principle:
Principle #16Partial or excessive action

Solution Approach 2:

The patent changes the catalytic parameters of the peptide amidation enzyme by using mutated forms of PAM with different activity levels. By adjusting the enzymatic activity parameter through genetic modification, the invention achieves optimal balance between protein production efficiency and product homogeneity, reducing unwanted amidated variants while maintaining yield

Inventive Principle:
Principle #35Parameter changes

Applied Scientific Principles

This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.

Function Achieved in This Case

This approach enables the reduction of amidated amino acids, enhancing protein production consistency, safety, and efficacy by minimizing heterogeneity and immunogenicity, thereby improving the quality and yield of biopharmaceuticals.

Implementation Method 1

The peptide amidation is catalysed by the enzyme peptidylglycine alpha-amidating monooxygenase (PAM)

Methodology Applied
Scientific EffectEnzyme catalysis: Enzyme

Data Source

PatentEP2839003B1Reduction of formation of amidated amino acids in cell lines for protein expression
Publication Date: 2018.06.27 LEK PHARMA D D
  • EP2839003B1 patent drawingFigure 1~2
  • EP2839003B1 patent drawingFigure 3~4
  • EP2839003B1 patent drawingFigure 5~6

AI summary

The present invention is related to a method to reduce peptide amidation activity in a given cell line, cell lines with reduced peptide amidation activity, and uses thereof.