Cyclophane Fluorescent Probes for Live-Cell Imaging

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Solution Overview

Problem

Current fluorescent probes for live-cell imaging face challenges such as water solubility, pH sensitivity, photostability, membrane permeability, aggregation-induced quenching, and cell viability, making it difficult to design probes that are bright, non-cytotoxic, and efficiently deliverable into living cells.

Innovation Solution

The development of cyclophanes with a rigid, box-like structure incorporating a fluorescent thiazolothiazole unit and an extended viologen molecular strut, which are designed to resist photobleaching and prevent cytotoxic interactions with cells, allowing for persistent and bright fluorescence under live-cell imaging conditions.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Measurement precision

If conventional fluorescent probes are used for live-cell imaging, then high sensitivity and versatility are achieved, but water solubility, photostability, and cell viability issues occur

Engineering Contradiction:
Improveimaging sensitivityVSAvoidphotostability
Core Design Contradiction:
Measurement precisionVSReliability

Solution Approach 1:

The patent employs a composite molecular structure combining a fluorescent thiazolothiazole chromophore with a viologen molecular strut connected by xylene linker units. This composite architecture integrates the fluorescent properties of thiazolothiazole with the structural stability of viologen, achieving both high imaging sensitivity and exceptional photostability that resists photobleaching under live-cell conditions

Inventive Principle:
Principle #40Composite materials

2Illumination intensity

If fluorescent probes are designed for high brightness, then imaging sensitivity improves, but cytotoxicity increases

Engineering Contradiction:
Improvefluorescence brightnessVSAvoidcell cytotoxicity
Core Design Contradiction:
Illumination intensityVSObject-affected harmful factors

Solution Approach 1:

The patent applies local quality by confining the fluorescent thiazolothiazole chromophore within a specific spatial arrangement defined by the rigid cyclophane structure. The molecular strut and linker units create a localized environment that maintains high fluorescence brightness while preventing harmful interactions with cellular components, thus achieving bright imaging without cytotoxicity

Inventive Principle:
Principle #3Local quality

3Reliability

If probes are made water-soluble for biological compatibility, then cell viability improves, but aggregation-induced quenching occurs

Engineering Contradiction:
Improvebiological compatibilityVSAvoidfluorescence intensity
Core Design Contradiction:
ReliabilityVSIllumination intensity

Solution Approach 1:

The patent segments the molecular structure into distinct functional units: the hydrophilic viologen molecular strut, the aromatic thiazolothiazole chromophore, and the xylene linker units. This segmentation allows the probe to maintain water solubility through the viologen unit while the rigid cyclophane architecture prevents aggregation, thereby avoiding quenching and maintaining high fluorescence intensity in aqueous biological environments

Inventive Principle:
Principle #1Segmentation

4Reliability

If rigid structures are used to prevent photobleaching, then photostability improves, but membrane permeability decreases

Engineering Contradiction:
ImprovephotostabilityVSAvoidmembrane permeability
Core Design Contradiction:
ReliabilityVSEase of operation

Solution Approach 1:

The patent optimizes the physical-chemical parameters of the rigid cyclophane structure, including molecular size, charge distribution, and hydrophobicity, to achieve a balance between photostability and membrane permeability. The viologen unit provides appropriate charge characteristics that facilitate cellular uptake while the rigid framework maintains photostability, demonstrating that parameter optimization can reconcile seemingly contradictory properties

Inventive Principle:
Principle #35Parameter changes

Applied Scientific Principles

This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.

Function Achieved in This Case

The cyclophanes demonstrate high photostability, non-cytotoxicity, and efficient cellular uptake, enabling prolonged and intense fluorescence without significant photobleaching or cell viability reduction, making them suitable for live-cell imaging applications.

Implementation Method 1

Fluorescent probes provide high sensitivity and great versatility, minimally perturbing the cells under investigation

Methodology Applied
Scientific EffectFluorescence: Fluorescence

Data Source

PatentUS20240245807A1Cyclophanes for Live-Cell Imaging
Publication Date: 2024.07.25 NORTHWESTERN UNIV
  • US20240245807A1 patent drawing
  • US20240245807A1 patent drawing
  • US20240245807A1 patent drawing

AI summary

Described herein are cyclophanes, compositions, and methods for live cell imaging. The cyclophanes comprise an ordered, cyclic arrangement of a chromophore, a first linker unit, a molecular strut, and a second linker unit. The compositions are capable of being taking up by cells and resist photobleaching under live-cell imaging conditions.