Ion Exchange Membrane Chromatography for Protein Purification

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Solution Overview

Problem

Current protein purification methods, particularly those using Protein A chromatography, face challenges such as protein denaturation, high costs, and inefficiencies in removing host cell proteins and contaminants, which complicate downstream processing and increase costs, especially for antibodies and polypeptides.

Innovation Solution

The method involves passing a composition of polypeptides and contaminants through ion exchange membranes with opposite charges under specific pH and conductivity conditions to enhance binding and subsequent purification, using cation or anion exchange membranes depending on the polypeptide's pI, allowing for efficient removal of impurities and subsequent further purification steps.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Manufacturing precision

If Protein A chromatography is used for antibody purification, then product-related purity is improved (over 98%), but additional purification steps are required to remove host cell proteins and DNA, increasing process complexity and cost

Engineering Contradiction:
Improveproduct purityVSAvoidnumber of purification steps
Core Design Contradiction:
Manufacturing precisionVSDevice complexity

Solution Approach 1:

The patent combines the capture and clarification functions into a single step by using the ion exchange membrane to simultaneously bind the antibody and remove host cell proteins and DNA in one pass, eliminating the need for separate clarification and capture steps

Inventive Principle:
Principle #5Merging (Combining)

Solution Approach 2:

The patent segments the purification process by placing the ion exchange membrane upstream to remove impurities before the main capture step, allowing the downstream column to focus only on antibody capture and elution

Inventive Principle:
Principle #1Segmentation

2Productivity

If Protein A chromatography is used, then antibody capture efficiency is improved, but operational costs increase due to column expense and additional processing steps

Engineering Contradiction:
Improveantibody capture efficiencyVSAvoidprocess cost
Core Design Contradiction:
ProductivityVSEase of manufacture

Solution Approach 1:

The patent uses a disposable ion exchange membrane that can be discarded after single use, eliminating the need for expensive, reusable Protein A columns and their associated cleaning and validation requirements

Inventive Principle:
Principle #27Cheap short-living objects (Disposable)

Solution Approach 2:

The patent extracts the clarification function from the main capture process and performs it upstream using the ion exchange membrane, allowing the use of cheaper materials for the primary capture step

Inventive Principle:
Principle #2Taking out (Extraction)

3Productivity

If low pH elution is used in Protein A chromatography, then antibody elution efficiency is improved, but protein denaturation occurs

Engineering Contradiction:
Improveelution efficiencyVSAvoidprotein denaturation
Core Design Contradiction:
ProductivityVSObject-affected harmful factors

Solution Approach 1:

The patent changes the elution mechanism from pH-dependent (Protein A) to competitive displacement-dependent, allowing elution at physiological pH using agents like gentamicin or polyethyleneimine that compete for binding sites

Inventive Principle:
Principle #35Parameter changes

4Ease of manufacture

If conventional ion exchange columns are used, then cost is reduced, but impurities interfere with downstream process efficiency

Engineering Contradiction:
Improvecolumn costVSAvoiddownstream process efficiency
Core Design Contradiction:
Ease of manufactureVSProductivity

Solution Approach 1:

The patent performs preliminary impurity removal upstream using the ion exchange membrane before the main capture step, preventing impurities from interfering with downstream conventional ion exchange columns

Inventive Principle:
Principle #10Preliminary action

Applied Scientific Principles

This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.

Function Achieved in This Case

This approach improves the efficiency of downstream chromatography steps by effectively binding and removing contaminants, reducing the need for additional purification steps and lowering operational costs, while protecting ion exchange columns from impurities that can disrupt their performance.

Implementation Method 1

passing a composition comprising a polypeptide of interest and various contaminants through an ion exchange membrane, wherein the polypeptide and the membrane have opposite charge

Methodology Applied
Scientific EffectIon exchange: Ion Exchange

Implementation Method 2

the polypeptide and the membrane have opposite charge... which cause the membrane to bind the polypeptide and the at least one contaminant

Methodology Applied
Scientific EffectElectrostatic attraction: Electrostatics

Data Source

PatentUS20240247027A1Ion exchange membrane chromatography
Publication Date: 2024.07.25 GENENTECH INC
  • US20240247027A1 patent drawing
  • US20240247027A1 patent drawing
  • US20240247027A1 patent drawing

AI summary

Methods of enhancing efficiency of downstream chromatography steps for purification of proteins comprising: (a) passing a composition comprising a polypeptide of interest and various contaminants through an ion exchange membrane, wherein the polypeptide and the membrane have opposite charge, at operating conditions comprised of a buffer having a pH sufficiently distinct from the pi of the polypeptide to enhance the charge of the polypeptide and a low ionic strength effective to prevent the shielding of charges by buffer ions, which cause the membrane to bind the polypeptide and at least one contaminant, (b) overloading the ion exchange membrane such that at least one contaminant remains bound to the membrane while the polypeptide of interest is primarily in the effluent; (c) collecting the effluent from the ion exchange membrane comprising the polypeptide of interest; (d) subjecting the membrane effluent comprising the polypeptide of interest to a purification step of similar charge as the previous membrane, and (e) recovering the purified polypeptide from the effluent of the charged ion exchange chromatography purification step.