Mutant Sucrose Permease Polypeptides for Industrial Fermentation

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Solution Overview

Problem

Industrial microbial strains struggle to efficiently utilize sucrose as a carbon source due to low sucrose utilization rates and productivity, limiting the production of glycosylated products in a cost-effective and time-efficient manner.

Innovation Solution

Development of novel sucrose permease polypeptides with specific mutations, integrated into metabolically engineered cells, enabling enhanced sucrose uptake and utilization, and a method for producing and purifying glycosylated products such as monosaccharides, phosphorylated monosaccharides, disaccharides, oligosaccharides, glycoproteins, or glycolipids.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Productivity

If conventional sucrose permease (CscB) is used in industrial microbial strains, then the strain can utilize sucrose as a carbon source, but the sucrose utilization rate and productivity remain low

Engineering Contradiction:
Improvesucrose utilization rateVSAvoidconsistency of sucrose utilization ability
Core Design Contradiction:
ProductivityVSReliability

Solution Approach 1:

The patent applies parameter changes by introducing specific amino acid mutations (E106K, E106R, D107K, D107R, E106K/D107K, E106R/D107R) at positions 106 and 107 of the CscB sucrose permease sequence. These parameter changes in the protein structure directly improve the sucrose utilization rate and productivity while maintaining reliable sucrose utilization ability in industrial microbial strains.

Inventive Principle:
Principle #35Parameter changes

2Ease of manufacture

If sucrose is used as a carbon source instead of glucose, then cost and environmental benefits are improved, but the ability to utilize sucrose efficiently is limited in most industrial strains

Engineering Contradiction:
Improvecost-effectivenessVSAvoidsucrose utilization rate
Core Design Contradiction:
Ease of manufactureVSProductivity

Solution Approach 1:

The patent modifies the sucrose permease protein parameters through specific amino acid substitutions at positions 106 and 107, enabling industrial strains to efficiently utilize sucrose as a carbon source. This resolves the contradiction by maintaining the cost-effectiveness of sucrose while improving the utilization rate through engineered parameter changes in the transport protein.

Inventive Principle:
Principle #35Parameter changes

3Productivity

If existing sucrose utilization systems (cscBKA or cscBKAR) are used, then sucrose utilization is enabled, but growth rates on sucrose and product productivity remain low

Engineering Contradiction:
Improveproduct productivityVSAvoidgrowth rate on sucrose
Core Design Contradiction:
ProductivityVSSpeed

Solution Approach 1:

The patent introduces parameter changes in the sucrose permease protein structure through amino acid mutations at positions 106 and 107. These changes enhance both the growth rate on sucrose and product productivity by improving the efficiency of sucrose transport into the cell, thereby resolving the contradiction between speed and productivity.

Inventive Principle:
Principle #35Parameter changes

Applied Scientific Principles

This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.

Function Achieved in This Case

The novel sucrose permease polypeptides improve sucrose utilization rates and productivity in metabolically engineered cells, facilitating the efficient production and purification of glycosylated products, thereby addressing the limitations of existing technologies in using sucrose as a carbon source.

Implementation Method 1

extracellular sucrose is taken up in the cell by a sucrose permease

Methodology Applied
Scientific EffectSymport:

Implementation Method 2

sucrose:H+ symporter (sucrose permease)

Methodology Applied
Scientific EffectProton gradient-driven transport:

Implementation Method 3

Sucrose-6-P is then hydrolyzed in the cell by a sucrose-6-P hydrolase (invertase) generating fructose and glucose-6-phosphate

Methodology Applied
Scientific EffectHydrolysis: Hydrolysis

Implementation Method 4

Fructose is then catalysed by an ATP-dependent fructokinase to generate fructose-6-P

Methodology Applied
Scientific EffectPhosphorylation:

Implementation Method 5

glucose is catalysed by an ATP-dependent glucokinase to generate glucose-6-P

Methodology Applied
Scientific EffectPhosphorylation:

Implementation Method 6

Glucose-1-P can be converted to glucose-6-P by a phosphoglucomutase

Methodology Applied
Scientific EffectIsomerization:

Data Source

PatentUS20240035004A1Variant sucrose permease polypeptides
Publication Date: 2024.02.01 INBIOSE NV
  • US20240035004A1 patent drawing
  • US20240035004A1 patent drawing
  • US20240035004A1 patent drawing

AI summary

The present invention is in the technical field of synthetic biology and metabolic engineering. More particularly, the present invention is in the technical field of fermentation of metabolically engineered cells. The present invention describes new sucrose permease polypeptides, and their applications. The present invention also describes a metabolically engineered cell for the production of a glycosylated product using the novel sucrose permease polypeptides. Furthermore, the present invention provides a method for the production of a glycosylated product by a cell using the novel sucrose permease polypeptides as well as the purification of said glycosylated product from the cultivation.