Recombinant Factor IX Production with PACE, VKOR, and VKGC

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Solution Overview

Problem

Existing recombinant technologies for producing vitamin K-dependent proteins, such as Factor IX, are limited by the inability to achieve adequate post-translational modifications, resulting in low levels of fully functional protein and high production costs, making them inaccessible to many regions worldwide.

Innovation Solution

A method involving the co-expression of genes encoding vitamin K-dependent proteins with paired basic amino acid converting enzyme (PACE), vitamin K-dependent epoxide reductase (VKOR), and vitamin K-dependent γ-glutamyl carboxylase (VKGC) in mammalian cells, optimized by using a Chinese hamster elongation factor 1-α (CHEF1) promoter, to enhance gamma-carboxylation and produce biologically active proteins at levels suitable for commercial use.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Reliability

If recombinant technologies are used to produce vitamin K-dependent proteins, then production costs increase and functional protein levels remain low, but if traditional methods are used, then pathogen contamination risks increase

Engineering Contradiction:
Improvesafety from pathogen contaminationVSAvoidyield of fully functional protein
Core Design Contradiction:
ReliabilityVSProductivity

Solution Approach 1:

The patent combines multiple processing enzymes (PACE, VKOR, VKGC) into a single recombinant expression system within mammalian cells. This merging of functions allows the cell to simultaneously perform propeptide removal, vitamin K epoxide reduction, and gamma-carboxylation, achieving high levels of fully functional protein (≥15 mg/L) while maintaining safety from pathogen contamination through recombinant production.

Inventive Principle:
Principle #5Merging (Combining)

2Reliability

If recombinant production methods are used, then pathogen contamination risk decreases, but post-translational modification capabilities are insufficient, resulting in low functional protein levels

Engineering Contradiction:
Improvefreedom from pathogen contaminationVSAvoidextent of post-translational modification
Core Design Contradiction:
ReliabilityVSManufacturing precision

Solution Approach 1:

The patent merges three separate processing functions (PACE for propeptide conversion, VKOR for epoxide reduction, and VKGC for gamma-carboxylation) into a single recombinant expression system. This allows the mammalian cell to perform all necessary post-translational modifications internally, achieving ≥90% gamma-carboxylation and high levels of fully functional protein while maintaining the safety advantages of recombinant production.

Inventive Principle:
Principle #5Merging (Combining)

Solution Approach 2:

The patent introduces exogenous processing enzymes (PACE, VKOR, VKGC) as intermediaries to bridge the gap between the cell's native capabilities and the required post-translational modifications. These intermediary enzymes enable the recombinant system to achieve proper protein processing and activation that would otherwise be insufficient in standard recombinant expression systems.

Inventive Principle:
Principle #24Intermediary (Mediator)

3Ease of manufacture

If standard recombinant expression systems are used, then production is simpler, but the ability to perform complete post-translational modifications is lacking

Engineering Contradiction:
Improvesimplicity of recombinant expressionVSAvoidyield of biologically active protein
Core Design Contradiction:
Ease of manufactureVSProductivity

Solution Approach 1:

The patent combines multiple processing enzyme genes (PACE, VKOR, VKGC) with the vitamin K-dependent protein gene in a single recombinant expression system. This merged approach maintains the simplicity of recombinant expression while enabling complete post-translational modifications, resulting in high yields of biologically active protein (≥15 mg/L) without requiring complex multi-step processing systems.

Inventive Principle:
Principle #5Merging (Combining)

Applied Scientific Principles

This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.

Function Achieved in This Case

The method significantly increases the yield of fully functional vitamin K-dependent proteins, such as Factor IX, to at least 15 mg/L, ensuring a higher percentage of biologically active protein, thereby reducing production costs and making them more accessible globally.

Implementation Method 1

transfecting a mammalian cell with a gene encoding a vitamin K dependent protein operably linked to a promoter

Methodology Applied
Scientific EffectTranscription:

Implementation Method 2

transfecting a mammalian cell with a gene encoding a vitamin K dependent protein operably linked to a promoter

Methodology Applied
Scientific EffectTranslation:

Implementation Method 3

co-expression of one or more proteins involved in the processing of the vitamin K dependent proteins. These processing proteins include paired basic amino acid converting enzyme (PACE), vitamin K dependent epoxide redactase (VKOR)

Methodology Applied
Scientific EffectEnzyme catalysis: Enzyme

Implementation Method 4

co-expression of one or more proteins involved in the processing of the vitamin K dependent proteins. These processing proteins include paired basic amino acid converting enzyme (PACE), vitamin K dependent epoxide redactase (VKOR) and vitamin K dependent y-glutamyl carboxylase (VKGC)

Methodology Applied
Scientific EffectEnzyme catalysis: Enzyme

Data Source

PatentUS20250263769A1Method of producing biologically active vitamin k dependent proteins by recombinant methods
Publication Date: 2025.08.21 APTEVO BIOTHERAPEUTICS LLC
  • US20250263769A1 patent drawing

AI summary

The invention relates to commercially viable methods for producing biologically active vitamin K dependent proteins, particularly Factor IX. Factor IX is produced at a level of at least about 15 mg/L and is at least 25% biologically active. The method relies upon co-expression of one or more of paired basic amino acid converting enzyme (PACE), vitamin K dependent epoxide reductase (VKOR) and vitamin K dependent γ-glutamyl carboxylase (VKGC) at a preferred ratio so that the vitamin K dependent protein is efficiently produced and processed by a recombinant cell.