Soybean Engineered Resistance via Pathogen-Specific Protease Cleavage

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Solution Overview

Problem

Current methods for protecting soybean crops from diseases like Asian Soybean Rust and Soybean Cyst Nematode are either time-consuming, costly, or environmentally harmful, and existing genetic engineering techniques have limitations in providing broad-spectrum resistance against multiple pathogens.

Innovation Solution

Development of recombinant nucleic acids encoding modified hypersensitive response substrate proteins with heterologous cleavage sites specific to target pathogens, which trigger a localized immune response when recognized by pathogen-specific proteases, enhancing resistance to specific plant pathogens.

Engineering Contradictions & Design Principles

VSEngineering Contradiction Analysis

1Reliability

If conventional breeding methods are used to develop disease resistance, then resistance can be achieved, but the process is time-consuming and requires continuous effort to maintain resistance as pathogens evolve

Engineering Contradiction:
Improvedisease resistanceVSAvoidbreeding time
Core Design Contradiction:
ReliabilityVSLoss of time

Solution Approach 1:

The patent introduces engineered substrate proteins with specific cleavage sites into the plant genome beforehand, so that when the corresponding pathogen infects, the immune response is immediately triggered. This preliminary genetic modification eliminates the need for time-consuming conventional breeding cycles to develop resistance

Inventive Principle:
Principle #10Preliminary action

Solution Approach 2:

The patent modifies the molecular parameters of substrate proteins by engineering specific cleavage sites that match pathogen proteases. This molecular-level parameter change enables precise pathogen recognition and immune activation, providing rapid and reliable resistance without traditional breeding time delays

Inventive Principle:
Principle #35Parameter changes

2Reliability

If chemical fungicides are used to control Asian Soybean Rust, then disease incidence can be reduced, but costs increase and harmful effects on the ecosystem occur

Engineering Contradiction:
Improvedisease controlVSAvoidecological harm
Core Design Contradiction:
ReliabilityVSObject-affected harmful factors

Solution Approach 1:

The patent converts the pathogen's own proteases, which are harmful tools for infection, into beneficial triggers for immune activation. The engineered substrate proteins are specifically designed to be cleaved by pathogen proteases, transforming the pathogen's attack mechanism into a signal for plant defense

Inventive Principle:
Principle #22Blessing in disguise (Convert harm into benefit)

Solution Approach 2:

The plant's immune system is engineered to activate automatically upon pathogen detection through protease-mediated cleavage of substrate proteins. This self-service mechanism eliminates the need for external chemical interventions, reducing both costs and ecological harm while maintaining reliable disease control

Inventive Principle:
Principle #25Self-service

3Reliability

If existing genetic engineering techniques are used, then some resistance can be achieved, but broad-spectrum resistance against multiple pathogens is limited

Engineering Contradiction:
Improvepathogen resistanceVSAvoidbroad-spectrum resistance
Core Design Contradiction:
ReliabilityVSAdaptability or versatility

Solution Approach 1:

The patent creates a universal immune system platform where engineered substrate proteins with different cleavage sites can recognize multiple pathogen types. By designing substrate proteins that target conserved proteases across different pathogen groups (such as cysteine proteases in fungi and nematodes), the system achieves broad-spectrum resistance while maintaining reliable protection

Inventive Principle:
Principle #6Universality (Multi-functionality)

Applied Scientific Principles

This section explains which scientific principles are used to turn an abstract innovation direction into a practical engineering solution.

Function Achieved in This Case

The modified substrate proteins confer increased resistance to target pathogens by activating a hypersensitive response in plants, reducing disease symptoms and yield loss, and can be specifically engineered for Basidiomycete or Nematoda species, offering a more effective and sustainable disease control method.

Implementation Method 1

The at least one substrate protein has a pathogen-specific heterologous cleavage site and cleavage of the heterologous cleavage site by the protease of the target pathogen confers resistance to the target plant pathogen species

Methodology Applied
Scientific EffectProtease recognition and cleavage: Enzyme

Data Source

PatentUS20240060082A1Soybean Engineered Resistance
Publication Date: 2024.02.22 SYNGENTA CROP PROTECITON AG
  • US20240060082A1 patent drawing
  • US20240060082A1 patent drawing
  • US20240060082A1 patent drawing

AI summary

The present invention provides compositions, systems, and methods for conferring resistance to plant pathogens that express pathogen-specific proteases. Compositions of the invention may include a recombinant nucleic acid molecule comprising a promoter operably linked to a nucleotide sequence that encodes at least one substrate protein of a plant pathogen-specific protease expressed by a Phakopsora or Heterodera plant pathogen species. Additionally, the at least one substrate protein has a Phakopsora-specific or Heterodera-specific heterologous cleavage site, wherein cleavage of the cleavage site confers improved resistance to the Phakopsora or Heterodera plant pathogen species.