Compositions and methods for reducing ocular neovascularization
Patent Information
- Authority / Receiving Office
- HK · HK
- Patent Type
- Applications
- Current Assignee / Owner
- ADVERUM BIOTECHNOLOGIES INC
- Filing Date
- 2023-05-02
- Publication Date
- 2026-07-17
AI Technical Summary
Existing protein or antibody injection therapies for treating ocular neovascularization diseases such as AMD carry the risk of requiring frequent injections, leading to poor patient compliance and potential side effects such as inflammation and infection, especially in elderly patients.
Gene therapy employs the injection of viral vectors containing anti-VEGF agents, such as rAAV, into the eye to achieve long-term or sustained release of anti-VEGF agents, avoiding repeated injections. This includes using variant capsid proteins and nucleic acid sequences encoding anti-VEGF peptides, such as LGETTRP, inserted at specific sites on AAV2, for subretinal or intraocular injection.
It achieves long-term release of anti-VEGF agents, improves patient compliance, reduces the risk of inflammation and infection, provides a safer, more economical and convenient treatment option, and significantly reduces disease progression.
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Abstract
Description
(19) *EP004674483A2* (11) EP 4 674 483 A2 (12) EUROPEAN PATENT APPLICATION (43) Date of publication: 07.01.2026 Bulletin 2026 / 02 (21) Application number: 25208689.7 (22) Date of filing: 16.06.2017 (51) International Patent Classification (IPC): A61P 27 / 02 (2006.01) (52) Cooperative Patent Classification (CPC): A61K 48 / 005; A61K 31 / 46; A61K 31 / 496; A61K 48 / 0075; A61P 27 / 02; C07K 14 / 005; C07K 16 / 22; C12N 15 / 86; A61K 2039 / 505; C07K 2319 / 00; C12N 2750 / 14122; C12N 2750 / 14143 (84) Designated Contracting States: AL AT BE BG CH CY CZ DE DK EE ES FI FR GB GR HR HU IE IS IT LI LT LU LV MC MK MT NL NO PL PT RO RS SE SI SK SM TR (30) Priority: 16.06.2016 US 201662351231 P (62) Document number(s) of the earlier application(s) in accordance with Art. 76 EPC: 24184081.8 / 4 427 808 22154859.7 / 4 083 203 17814228.7 / 3 472 317 (71) Applicant: Adverum Biotechnologies, Inc. Redwood City, CA 94063 (US) (72) Inventors: • BLUMENKRANZ, Mark Redwood City, 94063 (US) • GASMI, Mehdi Redwood City, 94063 (US) (74) Representative: EIP Fairfax House 15 Fulwood Place London WC1V 6HU (GB) Remarks: This application was filed on 14‑10‑2025 as a divisional application to the application mentioned under INID code 62. (54) COMPOSITIONS AND METHODS FOR REDUCING OCULAR NEOVASCULARIZATION (57) The present disclosure provides pharmaceuti- cal compositions and methods thereof for the prevention or treatment of ocular neovascularization, such as AMD, in a subject, by administering to the subject a pharma- ceutical composition comprising a rAAV vector having a nucleic acid sequence that encodesananti-VEGFagent. EP 4 67 4 48 3 A 2 Processed by Luminess, 75001 PARIS (FR) Description CROSS-REFERENCE
[0001] This application claims the benefit of U.S. Provisional Application No. 62 / 351,231, filed June 16, 2016, the disclosure of which is incorporated herein by reference in its entirety. BACKGROUND OF THE DISCLOSURE
[0002] Vascular endothelial growth factor (VEGF) is a signal protein produced by cells that stimulates vasculogenesis and angiogenesis. VEGF can be a part of the system that restores the oxygen supply to tissues when blood circulation is inadequate. The normal function of VEGF can be to create new blood vessels during embryonic development, new blood vessels after injury, muscle following exercise, and new vessels to bypass blocked vessels.
[0003] Overexpression of VEGF can contribute to various disease states and conditions in mammals. Expression of VEGF in certain cancers canallow thecancer cells to growandmetastasize.Overexpression ofVEGFcancause vascular disease in the retina of the eye and other parts of the body.
[0004] VEGF and VEGF receptors (VEGFRs) are implicated in a number of diseases, including the development of choroidal neovascularization (CNV) and age-related macular degeneration. Examples of eye diseases or conditions associated with VEGF and / or VEGFR activity include neovascular (wet) age-related macular degeneration (AMD), macular edema following retinal vein occlusion (RVO), diabetic macular edema (DME), diabetic retinopathy (DR) in patients with DME, ischemic retinopathy, intraocular neovascularization, dry-AMD, retinal neovascularization, diabetic retina ischemia, diabetic retinal edema, proliferative diabetic retinopathy, central retinal vein occlusion, and branched retinal vein occlusion. SUMMARY OF THE DISCLOSURE
[0005] While some protein‑ or antibody-based injection therapies are available for the treatment of AMD, e.g., ranibizumab and bevacizumab, a gene therapy method of delivering an anti-VEGF agent into an eye can provide an improved treatment option for patients because gene therapy can provide prolonged or sustained release of the therapeutic agent in vivo without requiring repeated injections, which can increase the risks of inflammation, infection, and other adverse effects in some patients. Additionally, by not requiring repeated injections, gene therapy addresses the patient compliance and adherence challenge associated with therapies that require repeated injections, as non- compliance can result in vision loss and deterioration of the eye disease or condition. The rate of non-compliance and non-adherence to treatment regimens that require repeated or frequent trips tomedical offices for administration is higher among elderly patients, who are most impacted by AMD. Delivering a therapeutic agent into an eye of a patient via gene therapy can thus provide a safer, potentially more cost-effective, and more convenient treatment option for patients, and improve patient outcomes by addressing the non-compliance and non-adherence problem.
[0006] Thepresent disclosure relates to pharmaceutical compositions andmethodsof prevention or treatment of ocular neovascularization, such as AMD and CNV, in a subject (e.g., a human subject) by administering subretinally or intravitreally a pharmaceutical composition comprising a pharmaceutically effective amount of a vector or viral particles comprising a nucleic acid encoding an anti-VEGF agent, such as sFlt‑1, ranibizumab, or bevacizumab.
[0007] In some aspects, disclosed herein is a method of treating an eye disease or condition, the method comprising administering aunit doseof apharmaceutical suspension to aprimate subject by injection to aneye,wherein aunit dose of the pharmaceutical suspension comprises: between 1E12 to 1E13 vector genomes of rAAV having a variant capsid protein comprising an insertion of amino acid sequence selected from LGETTRP, NETITRP, KAGQANN, KDPKTTN, KDTDTTR,RAGGSVG,AVDTTKF,andSTGKVPNataposition that corresponds toaminoacids570‑611of capsidprotein VP1 inAAV2; and aheterologous sequenceencoding ananti-vascular endothelial growth factor (anti-VEGF) polypeptide. In some cases, the unit dose comprises between 2E12 to 6E12 vector genomes. In some cases, the subject is a non- human primate. In some cases, the subject is a human. In some cases, the eye condition or disease is neovascular (wet) age-related macular degeneration (AMD), macular edema following retinal vein occlusion, diabetic macular edema (DME), retinal vein occlusion, or diabetic retinopathy associatedwith DME. In some cases, the eye condition or disease is choroidal neovascularization or AMD. In somecases, administering the suspension results in a reduction in percentage of grade IV lesionsbyat least 5%ascompared toavehicle control, asmeasuredbycolor fundusphotography. In somecases, the reduction in percentageof grade IV lesions is at least 10%. In some cases, the unit dose comprises a volume that is not more than 100 µL. In some cases, the unit dose comprises a volume that is not more than 50 µL. In some cases, the insertion is LGETTRPat a position between amino acids 587and 588 inAAV2. In some cases, the subject is responsive to at least one of ranibizumab, bevacizumab, and sVEGFR‑1. In some cases, the subject has been pre-treated with ranibizumab or bevacizumab. In some instances, the injection is intravitreal. In some instances, the injection is subretinal. 2 EP 4 674 483 A2 5 10 15 20 25 30 35 40 45 50 55 In some cases, the administering by injection occurs not more than once in at least 2 years. In some cases, the administering by injection occurs not more than once in at least 5 years. In some cases, the administering is a one- time administration. In some cases, the method further comprises agitating the suspension to ensure even distribution prior to theadministering step. In somecases, themethod further compriseswarming thesuspension to room temperature prior to the administering step. In some cases, the suspension further comprises a surfactant. In some cases, the surfactant is selected from polysorbates, sodium dodecyl sulfate, sodium lauryl sulfate, lauryl dimethyl amine oxide, polyethoxylated alcohols, polyoxyethylene sorbitan, octoxynol, Brij, pluronic, and polyoxyl castor oil. In some cases, the suspension further comprises phenol,mannitol, sorbitol, or sodiumchloride. In somecases, themethod further comprises administering an antibiotic solution or an atropine sulfate ointment after the injection. In some cases, the antibiotic solution comprises ciprofloxacin. In some cases, the anti-VEGF polypeptide is a humanizedmonoclonal antibody. In some cases, the anti-VEGF polypeptide is an antibody fragment or Fab. In some cases, the humanized monoclonal antibody is ranibizumab or bevacizumab. In some cases, the anti-VEGF polypeptide is a soluble, truncated form of VEGF receptor 1 (sVEGFR‑1).
[0008] In other aspects, also disclosed herein is a method of treating an eye condition or disease, the method comprising: agitating a suspension composition, comprising: a rAAV having a variant capsid protein comprising an insertion of amino acid sequence selected from LGETTRP, NETITRP, KAGQANN, KDPKTTN, KDTDTTR, RAGGSVG, AVDTTKF, and STGKVPN at a position that corresponds to amino acids 570‑611 of capsid protein VP1 in AAV2; and a heterologous sequence encoding an anti-vascular endothelial growth factor (anti-VEGF) polypeptide; and administering the suspension composition to an eye of a human subject via injection. In some cases, the insertion is LGETTRPbetween amino acids 587 and 588 of AAV2. In some cases, the subject is characterized as having been pre-treated with ranibizumab or bevacizumab. In some cases, the subject is responsive to at least one of ranibizumab and bevacizumab. In some cases, the anti-VEGF polypeptide is a humanized monoclonal antibody. In some cases, the anti-VEGF polypeptide is an antibody fragment or Fab. In some cases, the humanized monoclonal antibody is ranibizumab or bevacizumab. In some cases, the anti-VEGF polypeptide is a soluble, truncated form of VEGF receptor 1 (sVEGFR‑1). In somecases, the volumeadministered to the subject is notmore than50µL. In somecases, the volumeadministered to the subject is not more than 100 µL. In some cases, the volume comprises a unit dose of between 1E12 to 1E13 vector genomes. In some cases, the volume comprises a unit dose of between 2E12 to 6E12 vector genomes. In some case, the administering step occurs not more than once in at least 2 years. In some cases, the administering step is a one-time injection. In some cases, the method further comprises assaying the subject for responsiveness to at least one approved therapy before administering the composition. In some cases, the approved therapy comprises ranibizumab and bevacizumab. In some cases, the suspension comprises a pharmaceutically acceptable excipient. In some cases, the excipient comprises a surfactant or a stabilizer. In some cases, the surfactant is selected from polysorbates, sodium dodecyl sulfate, sodium lauryl sulfate, lauryl dimethyl amine oxide, polyethoxylated alcohols, polyoxyethylene sorbitan, octoxynol, Brij, pluronic, and polyoxyl castor oil. In some cases, the pharmaceutically acceptable excipient comprises phenol, mannitol, sorbitol, or sodium chloride. In some cases, the eye condition or disease is neovascular (wet) age- related macular degeneration (AMD), macular edema following retinal vein occlusion, diabetic macular edema (DME), retinal vein occlusion, or diabetic retinopathy associated with DME. In some cases, the eye condition or disease is choroidal neovascularization or AMD. In some cases, the injection is intravitreal. In some instances, the injection is subretinal. In some cases, the insertion is LGETTRP at a position between amino acids 587 and 588 in AAV2. In some cases, the method further comprises warming the suspension to room temperature before administering.
[0009] In other aspects, also disclosed herein is a pharmaceutical composition comprising a unit dose of a suspension, comprising: a rAAV having a variant capsid protein comprising an insertion of amino acid sequence selected from LGETTRP, NETITRP, KAGQANN, KDPKTTN, KDTDTTR, RAGGSVG, AVDTTKF, and STGKVPN at a position that corresponds to amino acids 570‑611 of capsid protein VP1 in AAV2; and a heterologous sequence encoding an anti- vascular endothelial growth factor (anti-VEGF) polypeptide. In some cases, the unit dose is between 1E12 to1E13 vector genomes. In some cases, the unit dose is between 2E12 to 6E12 vector genomes. In some cases, the suspension is refrigerated. In somecases, a kit comprises thepharmaceutical composition anda solution for diluting thepharmaceutical composition. In some cases, the solution comprises a buffer, salt, alcohol, a surfactant, or any combination thereof. In some cases, the kit further comprises a syringe. In some cases, the anti-VEGF polypeptide is a humanized monoclonal antibody. In some cases, the anti-VEGF polypeptide is an antibody fragment or Fab. In some cases, the humanized monoclonal antibody is ranibizumab or bevacizumab. In some cases, the anti-VEGF polypeptide is a soluble, truncated form of VEGF receptor 1 (sVEGFR‑1). In some cases, the insertion is LGETTRP at a position between amino acids 587 and 588 in AAV2. INCORPORATION BY REFERENCE
[0010] All publications, patents, and patent applications mentioned in this specification are herein incorporated by reference to the sameextent as if each individual publication, patent, or patent applicationwasspecifically and individually 3 EP 4 674 483 A2 5 10 15 20 25 30 35 40 45 50 55 indicated to be incorporated by reference. BRIEF DESCRIPTION OF THE DRAWINGS
[0011] The novel features of the invention are set forth with particularity in the appended claims. A better understanding of the features and advantages of the present invention will be obtained by reference to the following detailed description that sets forth illustrative embodiments, in which the principles of the invention are utilized, and the accompanying drawings of which: FIG. 1 illustrates laser choroidal neovascularization (CNV) in a non-human primate model (African green monkeys). Nine lesions were induced by single laser application using laser irradiation of 750 mW, 50 µm, 100 ms for all spots except the central spot, which was treated with 400mW.Color fundus photography was performed immediately after the laser treatment to document the laser lesions. FIG. 2 illustrates the nucleic acid sequence of sVEGFR‑1. FIG. 3 illustrates CNV reduction after intravitreal injection of AAV2.7m8-sVEGFR‑1. AAV2.7m8-sVEGFR‑1 or a vehicle control comprising formulationbufferwasadministered toeyesofmonkeysvia intravitreal injectionatadoseof 2.1× 1012 vg. A decrease in the percent grade IVCNV lesionswas observed for AAV2.7m8-sVEGFR‑1 as compared to administration of vehicle alone for the fundus image collected at day 14 (light gray bar). No significant difference in the percent grade IV CNV lesions was observed for AAV2.7m8-sVEGFR‑1 as compared to administration of vehicle alone as measured by fundus images collected at day 28 (dark gray bar). FIG.4 illustratesAAV2.7m8-ranibizumabadministered intravitreally prevented theoccurrenceof laser-inducedgrade IV CNV lesions. AAV2.7m8-ranibizumab, ranibizumab alone (positive control), or vehicle control comprising for- mulation buffer were administered to eyes of monkeys via intravitreal injection at a dose of 2 × 1012 vg. AAV2.7m8- ranibizumab significantly reduced grade IV CNV lesions to levels comparable to ranibizumab alone as measured by fundus images collected at day 14 (light gray bar) and day 28 (dark gray bar). DETAILED DESCRIPTION OF THE DISCLOSURE
[0012] Several aspects are described below with reference to example applications for illustration. It should be understood that numerous specific details, relationships, and methods are set forth to provide a full understanding of the features described herein.Onehavingordinary skill in the relevant art, however, will readily recognize that the features describedherein canbepracticedwithout oneormoreof the specific details orwithothermethods. The featuresdescribed herein are not limited by the illustrated ordering of acts or events, as some acts can occur in different orders and / or concurrently with other acts or events. Furthermore, not all illustrated acts or events are required to implement a methodology in accordance with the features described herein.
[0013] The present disclosure relates to pharmaceutical compositions and methods of treatment or prevention of eye diseases or conditions comprising administering a gene therapy, a vector, or a construct by intravitreal or subretinal injection into an eye of a primate (e.g., a monkey or a human) comprising a nucleic acid sequence (e.g., cDNA) that encodes an anti-VEGF agent. Upon intravitreal or subretinal injection of a gene therapy, a vector, or a construct, comprising a nucleic acid sequence that encodes an anti-VEGF agent or transgene, the anti-VEGF gene is expressed in vivo in target cells or tissue, e.g., in retinal cells, to generate anti-VEGFprotein or gene product to produce a therapeutic effect.
[0014] In some embodiments, a gene therapy, vector, or construct comprising an anti-VEGF agent is used to treat or prevent one or more eye diseases or conditions, including, but not limited to, neovascular (wet) age-related macular degeneration (AMD), retinal vein occlusion (RVO),macular edema followingRVO,diabeticmacular edema (DME), and / or diabetic retinopathy (DR) in patients with DME, or any other related eye disease or condition involving neovascularization (e.g., choroidal neovascularization (CNV)) in a primate or human subject. In some embodiments, methods described hereinareused to treataneyediseaseor condition that is responsive toastandardof care therapyoranexisting treatment, e.g., ranibizumab or bevacizumab injection. In some embodiments, methods described herein are used to treat an eye diseaseor condition that is responsive to at least onecurrent standardof care, e.g., ranibizumabor bevacizumab injection, for AMD, RVO, DME, DR, or DR in patients with DME.
[0015] The present disclosure relates to compositions and methods for the prevention or treatment of ocular neovas- cularization in a subject (e.g., non-human primate or human), by administering either subretinally or intravitreally a pharmaceutical composition adapted for gene therapy, comprising a pharmaceutically effective amount of a vector, e.g., a viral vector such as adeno-associated virus (AAV), comprising a nucleic acid encoding an anti-VEGF agent, a therapeutic transgene, or a nucleic acid sequence that encodes a polypeptide having at least 75%, 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% homology to sVEGFR‑1, ranibizumab, bevacizumab, or any other known ant-VEGF agent, or any functional fragment, mutant, or variant thereof. 4 EP 4 674 483 A2 5 10 15 20 25 30 35 40 45 50 55 Such homology can be based on the nucleic acid sequence (e.g., cDNA), amino acid sequence, spatial conformation, or protein structure (e.g., secondary, tertiary, or quaternary structure).
[0016] In some aspects, a vector disclosed herein is an adeno-associated virus (AAV) of any serotype, comprising a mutation, such as an insertion of 5 to 11 amino acids at a site in the solvent-exposedGH loop or loop IVof a capsid protein. In someembodiments, a 7-mer amino acid sequence is inserted in theGH loop or loop IVof anAAVcapsid protein. For the GH loop / loop IVofAAVcapsid, see, e.g., vanVliet et al. (2006)Mol.Ther. 14:809;Padronet al. (2005) J.Virol. 79:5047;and Shenetal. (2007)Mol. Ther. 15:1955. In someembodiments, anaminoacidsequencecomprisinganyoneof the following: LGETTRP, NETITRP, KAGQANN, KDPKTTN, KDTDTR, RAGGSVG, AVDTTKF, and STGKVPN is inserted in the GH loop / loop IV of AAV capsid protein (e.g., VP1 capsid protein), thus creating AAV variants, each having a variant capsid protein. In some embodiments, the amino acid insertion occurs at the following positions in each AAV serotype: between 587 and 588 of AAV2, between amino acids 590 and 591 of AAV1, between amino acids 575 and 576 of AAV5, between aminoacids590and591ofAAV6, betweenaminoacids589and590ofAAV7, betweenaminoacids 590and591ofAAV8, between amino acids 588 and 589 of AAV9, or between amino acids 589 and 590 of AAV10.
[0017] In some embodiments, amino acids can be inserted between two adjacent amino acids at a position between amino acids 570 and 611 of VP1 of AAV2 or the corresponding position in the capsid protein of another AAV serotype. In someembodiments, anAAV2vector comprisingLGETTRPaminoacid insertionbetweenaminoacids587and588ofVP1 of AAV2 is used for gene therapy disclosed herein. In some embodiments, methods of treatment as described herein comprise administering subretinally or intravitreally a pharmaceutical composition or formulation comprising an AAV of any serotype comprising a nucleic acid sequence encoding an anti-VEGF agent (e.g., sVEGFR‑1, ranibizumab, or bevacizumab). In some aspects, subretinal or intravitreal injection of the pharmaceutical compositions disclosed herein results in an expression of the anti-VEGF agent in target cells in an eye of a subject, e.g., retinal cells, which results in a reduction of neovascularization or VEGF expression and / or inhibition of VEGF expression or activity in vivo, or disruption of VEGF-VEGFR interaction in vivo. In some instances, expression of the anti-VEGF agent sequesters endogenous VEGF in vivo to prevent VEGF binding or interaction with endogenous VEGF receptors in vivo.
[0018] One advantage of gene therapy over protein injections is that gene therapy provides for prolonged or continued release of a therapeutic agent (e.g., anti-VEGF agent) and does not require repeated injections. This prolonged or sustained releaseof the therapeutic agent results from thedelivery of anucleic acid sequence that encodes the transgene, which is expressed in vivo to provide a therapeutic effect.
[0019] In someembodiments, a rAAVcancompriseacapsid variant protein that increases its infectivityof the target cells or tissue in an eye (e.g., retinal cells), allowingmore efficient delivery of the nucleic acid sequence encoding a therapeutic transgene into the target cells or tissue where the therapeutic transgene can be expressed over a period of time, e.g., at least 1, 1.5, 2, 3, 4, 5, 10, ormoreyears.Gene therapyasdisclosedherein can target aspecific tissueor cell typeof interest, e.g., photoreceptor cells, which can help to minimize off-target effects, or provide a more targeted delivery of the therapeutic transgene in vivo.
[0020] With prolonged or sustained delivery of an anti-VEGF agent in vivo via gene therapy, one would be able to administer the pharmaceutical composition comprising a nucleic acid sequence that encodes the anti-VEGF agent, in a single dose or a one-time dose. In some embodiments, the total number of doses of a gene therapy administered to a subject is not more than once in at least 1.5 years, in at least 2 years, at least 3 years, at least 4 years, at least 5 years, at least 6 years, at least 7 years, at least 8 years, at least 9 years, or at least 10years. In someembodiments, administrationof a gene therapy comprising a nucleic acid sequence encoding an anti-VEGF agent is only one time or once in the life of a patient. In some embodiments, one-time administration of a gene therapy comprising a nucleic acid sequence encoding ananti-VEGFagent canproducea therapeutic effect inapatient that lasts formore than1year, or formore than2, 3, 4, 5, 6, 7, 8, 9, 10 or more years. In some embodiments, a gene therapy comprising a nucleic acid sequence encoding an anti- VEGF agent is administered not more than once to a patient in at least 2 or more, at least 3 or more, at least 4 or more, at least 5 or more, at least 6 or more, at least 7 or more, at least 8 or more, at least 9 or more, or at least 10 or more years. In someembodiments, a gene therapy comprising a nucleic acid sequence encoding an anti-VEGFagent is administered to a patient who is responsive to at least one current standard of care or at least one existing therapy, e.g., ranibizumab or bevacizumab. In some embodiments, the gene therapy is administered to patients who received a pre-treatment with ranibizumab or bevacizumab before receiving the gene therapy.
[0021] In some embodiments, the one-time administration of a gene therapy comprising a nucleic acid sequence encodingananti-VEGFagent obviates theneed for thepatient to receive ranibizumab, bevacizumab, or anyother protein- based therapeutics or standard of care treatments for neovascularization in the eye formore than a year, formore than 1.5 years, or for more than 2, 3, 4, 5, 6, 7, 8, 9, 10 years. In some embodiments, a patient who receives an injection of a gene therapy comprising a nucleic acid sequence encoding an anti-VEGF agent does not need any additional injections of ranibizumab, bevacizumab, or anyother protein-based therapeutics or standardof care treatments for neovascularization in theeye for the remainderof thepatient’s life. Inotherembodiments,apatientwho receivesaone-time injectionofananti- VEGF gene therapy can commence therapywith ranibizumab, bevacizumab, and / or any other approved therapeutics, as needed, after at least 1.5, 2, 5, 10 or more years have lapsed after receiving the gene therapy. 5 EP 4 674 483 A2 5 10 15 20 25 30 35 40 45 50 55
[0022] The terminologyof thepresentdisclosure is for thepurposeofdescribingparticular casesonlyand isnot intended to be limiting of compositions, methods and compositions of this disclosure.
[0023] The compositions and methods of this disclosure as described herein may employ, unless otherwise indicated, conventional techniques and descriptions of molecular biology (including recombinant techniques), cell biology, bio- chemistry, immunochemistry and ophthalmic techniques, which are within the skill of those who practice in the art. Such conventional techniques include methods for observing and analyzing the retina, or vision in a subject, cloning and propagation of recombinant virus, formulation of a pharmaceutical composition, and biochemical purification and immunochemistry. Specific illustrations of suitable techniques can be had by reference to the examples herein. However, equivalent conventional procedures can, of course, also be used. Such conventional techniques and descriptions can be found in standard laboratorymanuals such asGreen, et al., Eds., GenomeAnalysis: A LaboratoryManual Series (Vols. I- IV) (1999);Weiner, et al., Eds., Genetic Variation: A LaboratoryManual (2007); Dieffenbach, Dveksler, Eds., PCRPrimer: A Laboratory Manual (2003); Bowtell and Sambrook, DNA Microarrays: A Molecular Cloning Manual (2003); Mount, Bioinformatics: Sequence and Genome Analysis (2004); Sambrook and Russell, Condensed Protocols from Molecular Cloning: A Laboratory Manual (2006); and Sambrook and Russell, Molecular Cloning: A Laboratory Manual (2002) (all from Cold Spring Harbor Laboratory Press); Stryer, L., Biochemistry (4th Ed.) W.H. Freeman, N.Y. (1995); Gait, "Oligonucleotide Synthesis: A Practical Approach" IRL Press, London (1984); Nelson and Cox, Lehninger, Principles ofBiochemistry, 3rdEd.,W.H.FreemanPub.,NewYork (2000); andBergetal., Biochemistry, 5thEd.,W.H.FreemanPub., New York (2002), all of which are herein incorporated by reference in their entirety for all purposes.
[0024] In some embodiments, disclosed herein are pharmaceutical formulations comprising: (a) a recombinant adeno- associated virus (rAAV2) virionadapted for gene therapy comprising: (i) a variant AAV2capsid protein,wherein the variant AAV2 capsid protein comprises LGETTRP insertion between positions 587 and 588, and wherein the variant capsid protein confers an increase in an infectivity of retinal cells relative to an AAV virion that comprises a corresponding non- variant AAV2 capsid protein; and (ii) a heterologous nucleic acid sequence encoding an anti-VEGF agent; and (b) a pharmaceutically acceptable excipient. In someembodiments, thegeneproduct that is encoded is apolypeptide havingat least 75%, 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% homology to ranibizumab, bevacizumab, or any other known anti-VEGF agent.
[0025] Also disclosed herein aremethods of treating an eye condition or disease for which the anti-VEGF gene product (e.g., ranibizumab or bevacizumab) is indicated or approved for treating, comprising administering a pharmaceutical composition adapted for gene therapy, i.e., delivering anucleic acid sequence that encodes an anti-VEGFgeneproduct in vivo, as described herein, to an eye of a subject by subretinal or intravitreal injection. In some embodiments, the gene therapy is administered by intravitreal injection. In some embodiments, the anti-VEGF agent is ranibizumab, bevacizu- mab, sVEGFR‑1, or any variant or functional fragment thereof.
[0026] Also disclosed herein are pharmaceutical compositions comprising a gene therapy or a vector that encodes a fusion protein or polypeptide having at least 75%, 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% homology to a known anti-VEGF protein or fusion protein (e.g., ranibizumab or bevacizumab), wherein the pharmaceutical compositions can be lyophilized, or supplied in lyophilized form. In some embodiments, a lyophilized form of the pharmaceutical composition is provided in a kit with a solution or buffer for reconstituting thepharmaceutical compositionbeforeadministration. In someembodiments, thepharmaceutical compositions disclosed herein are supplied as a solution, a homogeneous solution, a suspension, or a refrigerated suspension.
[0027] Also disclosed herein are recombinant adeno-associated virus (rAAV) virions adapted for gene therapy for reducing choroidal neovascularization comprising: (a) a variant AAV capsid protein, wherein the variant capsid protein confers an increase in an infectivity of retinal cells relative to an AAV virion that comprises a corresponding non-variant or unmodified AAV capsid protein; (b) a heterologous nucleic acid sequence encoding a polypeptide or therapeutic transgene with anti-VEGF activity. In some embodiments, the rAAV used for gene therapy is rAAV2.
[0028] Alsodisclosed herein aremethodsof treating aneye condition or disease comprising administering a rAAVvirion adapted for gene therapy and in vivo delivery of a nucleic acid sequence for expressing an anti-VEGF agent, or a protein having an anti-VEGF activity, as described herein to an eye of a human subject; where the human subject has been previously diagnosed with an eye condition associated with neovascularization. In some embodiments, the gene therapy is administered to a patient who is responsive to at least one of the approved anti-VEGF therapies, e.g., ranibizumab or bevacizumab. In some embodiments, the gene therapy is administered to a patient pre-treated with at least one of the approved therapies, e.g., ranibizumab or bevacizumab. In some embodiments, the gene therapy disclosed herein is administered to a patient who was pre-treated with at least one of the approved therapies, e.g., ranibizumab or bevacizumab injections, and failed to show improvement. In some embodiments, patients who receive the gene therapy disclosed herein have one or more risk factors that disfavor treating the patient with therapies that require multiple, repeated injections to an eye, e.g., increased risk of inflammation, infection, elevated intraocular pressure, and / or other adverse effects.
[0029] In some embodiments, disclosed herein are methods and pharmaceutical formulations comprising: (a) a 6 EP 4 674 483 A2 5 10 15 20 25 30 35 40 45 50 55 recombinant adeno-associated virus (rAAV) virion adapted for gene therapy comprising: (i) a variant AAV capsid protein comprising an amino acid insertion selected from LGETTRP, NETITRP, KAGQANN, KDPKTTN, KDTDTTR, RAGGSVG, AVDTTKF,andSTGKVPNataposition that corresponds toaminoacids570‑611of capsidproteinVP1 inAAV2, andwhere the variant capsid protein confers an increase in an infectivity of a retinal cell relative to an AAV virion that comprises a corresponding non-variant AAV2 capsid protein; and (ii) a heterologous nucleic acid sequence encoding an anti-VEGF agent; and (b) a pharmaceutically acceptable excipient. In some embodiments, the gene product that is encoded is a fusion protein, antibody, or an antibody fragment. In some embodiments, a pharmaceutically acceptable excipient comprises a surfactant that prevents aggregation in the pharmaceutical composition disclosed herein.
[0030] Unless otherwise defined, all technical terms used herein have the samemeaning as commonly understood by one of ordinary skill in the art.
[0031] The terminology used herein is for the purpose of describing particular cases only and is not intended to be limiting. As used herein, the singular forms "a", "an" and "the" are intended to include the plural forms as well, unless the context clearly indicatesotherwise.Furthermore, to theextent that the terms "including", "includes", "having", "has", "with", or variants thereof are used in either the detailed description and / or the claims, such termsare intended to be inclusive in a manner similar to the term "comprising". The term "comprising" as used herein is synonymous with "including" or "containing", and is inclusive or open-ended.
[0032] Any reference to "or" herein is intended to encompass "and / or" unless otherwise stated. As usedherein, the term "about" a number refers to that number plus or minus 10% of that number. The term "about" a range refers to that range minus 10% of its lowest value and plus 10% of its greatest value.
[0033] The term "subject", "patient", or "individual" refers to primates, includingnon-humanprimates, e.g., Africangreen monkeys and rhesus monkeys, and humans. In preferred embodiments, the subject is a human or a human patient.
[0034] The terms "treat," "treating", "treatment," "ameliorate" or "ameliorating" and other grammatical equivalents as used herein, include alleviating, abating or ameliorating a disease or condition symptoms, preventing additional symptoms, ameliorating or preventing the underlying metabolic causes of symptoms, inhibiting the disease or condition, e.g., arresting the development of the disease or condition, relieving the disease or condition, causing regression of the disease or condition, relieving a condition caused by the disease or condition, or stopping the symptoms of the disease or condition, and are intended to include prophylaxis. The terms further include achieving a therapeutic benefit and / or a prophylactic benefit. By therapeutic benefit is meant eradication or amelioration of the underlying disease being treated. Also, a therapeutic benefit is achieved with the eradication or amelioration of one or more of the physiological symptoms associatedwith the underlying disease such that an improvement is observed in the patient, notwithstanding that, in some embodiments, the patient is still afflicted with the underlying disease. For prophylactic benefit, the pharmaceutical compositions are administered to a patient at risk of developing a particular disease, or to a patient reporting one or more of the physiological symptoms of a disease, even if a diagnosis of the disease has not been made.
[0035] The terms "administer," "administering", "administration," and the like, as used herein, can refer to the methods that are used to enable delivery of therapeutics or pharmaceutical compositions to the desired site of biological action. These methods include intravitreal or subretinal injection to an eye.
[0036] The terms "effective amount", "therapeutically effective amount" or "pharmaceutically effective amount" as used herein, can refer to a sufficient amount of at least onepharmaceutical composition or compoundbeing administeredwhich will relieve to some extent one or more of the symptoms of the disease or condition being treated.
[0037] The term "pharmaceutically acceptable" as usedherein, can refer to amaterial, suchasa carrier or diluent,which doesnot abrogate thebiological activity or properties of a compounddisclosedherein, and is relatively nontoxic (i.e., when the material is administered to an individual it does not cause undesirable biological effects nor does it interact in a deleterious manner with any of the components of the composition in which it is contained).
[0038] The term "pharmaceutical composition," or simply "composition" as used herein, can refer to a biologically active compound, optionally mixed with at least one pharmaceutically acceptable chemical component, such as, though not limited to carriers, stabilizers, diluents, dispersing agents, suspending agents, thickening agents, excipients and the like.
[0039] An "AAV vector" or "rAAV vector" as used herein refers to an adeno-associated virus (AAV) vector or a recombinant AAV (rAAV) vector comprising a polynucleotide sequence not of AAV origin (i.e., a polynucleotide hetero- logous to AAV such as a nucleic acid sequence that encodes a therapeutic transgene, e.g., ranibizumab), typically a sequence of interest for the genetic transformation of a cell. In general, the heterologous polynucleotide is flanked by at least one, andgenerally by two,AAV inverted terminal repeat sequences (ITRs). The term rAAVvector encompasses both rAAV vector particles and rAAV vector plasmids. A rAAV vector may either be single-stranded (ssAAV) or self-com- plementary (scAAV).
[0040] An "AAV virus" or "AAV viral particle" or "rAAV vector particle" refers to a viral particle composed of at least one AAV capsid protein (typically by all of the capsid proteins of a wild-type AAV) and a polynucleotide rAAV vector. If the particle comprises a heterologous polynucleotide (i.e. a polynucleotide other than a wild-type AAV genome such as a transgene to be delivered to a mammalian cell), it is typically referred to as an "rAAV vector particle" or simply an "rAAV vector". Thus, production of rAAV particle necessarily includes production of rAAV vector, as such a vector is contained 7 EP 4 674 483 A2 5 10 15 20 25 30 35 40 45 50 55 within a rAAV particle..
[0041] The term "packaging" as used herein can refer to a series of intracellular events that can result in the assembly and encapsidation of a rAAV particle.
[0042] AAV "rep" and "cap" genes refer to polynucleotide sequencesencoding replicationandencapsidation proteins of adeno-associated virus. AAV rep and cap are referred to herein as AAV "packaging genes."
[0043] The term "polypeptide" can encompass both naturally-occurring and non-naturally occurring proteins (e.g., a fusionprotein), peptides, fragments,mutants, derivativesandanalogs thereof. Apolypeptidemaybemonomeric, dimeric, trimeric, or polymeric. Further, a polypeptidemay comprise a number of different domains each of which has one or more distinct activities. For the avoidance of doubt, a "polypeptide" may be any length greater two amino acids.
[0044] As used herein, "polypeptide variant" or simply "variant" refers to a polypeptide whose sequence contains an amino acid modification. In some instances, the modification can be an insertion, duplication, deletion, rearrangement or substitution of one ormore amino acids compared to the amino acid sequence of a reference protein or polypeptide, such asanativeorwild-typeprotein.Avariantmayhaveoneormoreaminoacidpoint substitutions, inwhichasingle aminoacid at a position hasbeenchanged to another aminoacid, oneormore insertionsand / or deletions, inwhich oneormoreamino acids are inserted or deleted, respectively, in the sequence of the reference protein, and / or truncations of the amino acid sequence at either or both the amino or carboxy termini. A variant can have the same or a different biological activity compared to the reference protein, or the unmodified protein.
[0045] In some embodiments, a variant can have, for example, at least 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% overall sequence homology to its counterpart reference protein, wherein the reference protein can be naturally occurring or non-naturally occurring, or a derivative or variant of a naturally occurring protein. In someembodiments, a variant can have at least about 90%overall sequence homology to the wild-type protein. In some embodiments, a variant exhibits at least about 95%, at least about 98%, at least about 99%, at least about 99.5%, or at least about 99.9% overall sequence identity.
[0046] Asused herein, "recombinant" can refer to a biomolecule, e.g., a geneor protein, that (1) has been removed from itsnaturallyoccurringenvironment, (2) isnotassociatedwithall or aportionofapolynucleotide inwhich thegene is found in nature, (3) isoperatively linked toapolynucleotidewhich it isnot linked to innature, or (4)doesnot occur innature.The term "recombinant" can be used in reference to cloned DNA isolates, chemically synthesized polynucleotide analogs, or polynucleotide analogs that are biologically synthesized by heterologous systems, as well as proteins and / or mRNAs encodedby suchnucleic acids. Thus, for example, a protein synthesized byamicroorganism is recombinant, for example, if it is synthesized from an mRNA synthesized from a recombinant gene present in the cell.
[0047] "Operatively linked" or "operably linked" or "coupled" can refer to a juxtaposition of genetic elements,wherein the elements are in a relationship permitting them to operate in an expected manner. For instance, a promoter can be operatively linked to a coding region if the promoter helps initiate transcription of the coding sequence. There may be intervening residues between the promoter and coding region so long as this functional relationship is maintained.
[0048] The term "expression vector" or "expression construct" or "cassette" or "plasmid" or simply "vector" can include any type of genetic construct, includingAAVor rAAV vectors, containing a nucleic acid or polynucleotide coding for a gene product in which part or all of the nucleic acid encoding sequence is capable of being transcribed and is adapted for gene therapy. The transcript can be translated into a protein. In some cases, it may be partially translated or not translated. In certain aspects, expression includes both transcription of a gene and translation of mRNA into a gene product. In other aspects, expression only includes transcription of the nucleic acid encoding genes of interest. An expression vector can also comprise control elements operatively linked to the encoding region to facilitate expression of the protein in target cells. The combination of control elements and a gene or genes to which they are operably linked for expression can sometimesbe referred to as an "expression cassette," a large number ofwhich are knownandavailable in the art or canbe readily constructed from components that are available in the art.
[0049] The term "heterologous" can refer to an entity that is genotypically distinct from that of the rest of the entity to which it is being compared. For example, a polynucleotide introduced by genetic engineering techniques into a plasmid or vector derived from a different species can be a heterologous polynucleotide. A promoter removed from its native coding sequence and operatively linked to a coding sequence with which it is not naturally found linked can be a heterologous promoter.
[0050] As used herein, "7m8" refers to the 7-mer amino acid sequence LGETTRP.
[0051] "7m8variant" refers to a rAAV,which canbeof any serotype,with the aminoacid sequenceLGETTRP inserted in the solvent exposed GH loop of the capsid protein.
[0052] When 7m8 is inserted in a rAAV2 (also referred to as AAV2.7m8), the 7-mer amino acid sequence LGETTRP is inserted into the GH loop of the AAV2 capsid protein, e.g., between positions 587 and 588 of the AAV2 capsid protein. When 7m8 is inserted in a rAAV1 (also referred to as AAV1.7m8), the 7-mer amino acid sequence LGETTRP is inserted into theGH loopof theAAV1capsidprotein, e.g., betweenaminoacids590and591of theAAV1capsid protein.When7m8 is inserted in a rAAV5 (also referred to as AAV5.7m8), the 7-mer amino acid sequence LGETTRP is inserted into the GH loop of theAAV5 capsid protein, e.g., between amino acids 575 and 576 of theAAV5 capsid protein.When 7m8 is inserted 8 EP 4 674 483 A2 5 10 15 20 25 30 35 40 45 50 55 in a rAAV6 (also referred to as AAV6.7m8), the 7-mer amino acid sequence LGETTRP is inserted into the GH loop of the AAV6 capsid protein, e.g., between amino acids 590 and 591of theAAV6 capsid protein.When 7m8 is inserted in a rAAV7 (also referred to asAAV7.7m8), the 7-mer aminoacid sequenceLGETTRP is inserted into theGH loop of theAAV7capsid protein, e.g., betweenaminoacids589and590of theAAV7capsidprotein.When7m8 is inserted in a rAAV8 (also referred to as AAV8.7m8), the 7-mer amino acid sequence LGETTRP is inserted into theGH loop of the AAV8 capsid protein, e.g., between amino acids 590 and 591 of the AAV8 capsid protein. When 7m8 is inserted in a rAAV9 (also referred to as AAV9.7m8), the 7-mer amino acid sequence LGETTRP is inserted into the GH loop of the AAV9 capsid protein, e.g., between amino acids 588 and 589 of the AAV9 capsid protein. When 7m8 is inserted in a rAAV10 (also referred to as AAV10.7m8), the 7-mer amino acid sequence LGETTRP is inserted into the GH loop of the AAV10 capsid protein, e.g., between amino acids 589 and 590 of the AAV10 capsid protein.
[0053] In some embodiments, disclosed herein are recombinant adeno-associated virus (rAAV) virions for reducing neovascularizationcomprising: (a) avariantAAVcapsidprotein,where thevariantAAVcapsidprotein comprisesanamino acid modification in a solvent-exposed region of the capsid protein and shows an increased infectivity of retinal cells relative to a corresponding non-variant AAV capsid protein; and (b) a heterologous nucleic acid comprising a nucleotide sequence encoding a gene product or a therapeutic transgene, and where an administration of an effective amount of the rAAV by intravitreal or subretinal injection in an eye of a primate or human subject results in a reduction in neovascular- ization in the eye.
[0054] Also disclosed herein are recombinant adeno-associated virus (rAAV) virions for reducing neovascularization comprising: (a) avariantAAVcapsidprotein,where thevariantAAVcapsidprotein comprisesanaminoacidmodification in a solvent-exposed region of the AAV capsid protein, andwherein the variant capsid protein confers an increased ability to crossan internal limitingmembrane (ILM) inaneye; and (b) aheterologousnucleic acid comprisinganucleotide sequence encoding a gene product, and where an administration of an effective amount of the rAAV by intravitreal or subretinal injection in an eye of a primate or human subject results in a reduction in neovascularization in the eye.
[0055] Also disclosed herein are recombinant adeno-associated virus (rAAV) virions, comprising: (a) a variant AAV capsid protein, wherein the variant AAV capsid protein comprises a peptide insertion of LGETTRP after an amino acid positioncorresponding to587 inAAV2,andwherein thevariant capsidprotein confersan increasedability todeliver agene product across an internal limitingmembrane (ILM) of aneye in primates; and (b) a heterologousnucleic acid comprising a nucleotide sequence encoding the gene product.
[0056] Also disclosed herein are gene therapy compositions in a unit dose form for treating an ocular condition or disease, comprising: (a) a recombinant adeno-associated virus (rAAV) virion comprising: (i) a variant AAV capsid protein, wherein the variant AAV capsid protein comprises an amino acid modification in a solvent-exposed region of the capsid protein and shows an increased infectivity of retinal cells relative to a corresponding non-variant AAV capsid protein; and (ii) a heterologous nucleic acid comprising a nucleotide sequence encoding a gene product, wherein the gene product when transduced reduces neovascularization in an eye of a primate or human subject; and (b) a pharmaceutically acceptable excipient; where the rAAV virion is in an amount sufficient to at least partially reduce neovascularization when administered by intravitreal or subretinal injection in the eye of the primate as a unit dose.
[0057] Also disclosed herein are methods of treating an ocular condition or disease, comprising administering a unit dose of a rAAV gene therapy described herein to a subject, e.g., a human subject.
[0058] The term "anti-VEGF agent" includes any therapeutic agent, including proteins, polypeptides, peptides, fusion protein, multimeric proteins, gene products, antibody, human monoclonal antibody, antibody fragment, aptamer, small molecule, kinase inhibitor, receptor or receptor fragment, or nucleic acidmolecule, that can reduce, interfere with, disrupt, blockand / or inhibit theactivity or functionof anendogenousVEGFand / oranendogenousVEGF receptor (VEGFR), or the VEGF-VEGFR interactionorpathway invivo.Ananti-VEGFagentcanbeanyoneof theknown therapeuticagents that can reduce new blood vessel growth or formation and / or oedem, or swelling, when delivered into a cell, tissue, or a subject in vivo, e.g., ranibizumab or bevacizumab. In some embodiments, an anti-VEGF agent can be naturally occurring, non- naturally occurring, or synthetic. In some embodiments, an anti-VEGF agent can be derived from a naturally occurring molecule thatwassubsequentlymodifiedormutated to conferananti-VEGFactivity. In someembodiments, ananti-VEGF agent is a fusionor chimeric protein. In suchproteins, functional domainsor polypeptidesareartificially fused toamoietyor a polypeptide tomakea fusion or chimeric protein that can sequester VEGF in vivo or function asaVEGFRdecoy. In some embodiments, an anti-VEGFagent is a fusion or chimeric protein that blocks endogenousVEGFR from interactingwith its ligands.
[0059] Asusedherein, "VEGF" can refer to any isoformofVEGF, unless required otherwise, including, but not limited to, VEGF-A, VEGF-B, VEGF-C, VEGF-D, VEGF-E, VEGF-F, or any combination, or any functional fragment or variant thereof. Unless required otherwise, "VEGF" can refer to any member of the VEGF family, including members: VEGF-A, placenta growth factor (PGF), VEGF-B, VEGF-C, and VEGF-D, or any combination, functional fragment, or variant thereof.
[0060] As used herein, "VEGF receptor" or "VEGFR" or "VEGF-R" can be used to refer to any one of the receptors of VEGF, including, but not limited to, VEGFR‑1 (or Flt‑1), VEGFR‑2 (or Flk‑1 / KDR), andVEGFR‑3 (or Flt‑4). VEGFRcan be 9 EP 4 674 483 A2 5 10 15 20 25 30 35 40 45 50 55 a membrane bound or soluble form, or a functional fragment or truncation of a receptor.
[0061] Examples of anti-VEGF agent include, but are not limited to, ranibizumab, bevacizumab, or any combination, variant, or functional fragment thereof.
[0062] Thesection headings usedherein are for organizational purposes only andare not to be construed as limiting the subject matter described. Vectors
[0063] Various viral vectors can be used in gene therapy, including adenovirus, adeno-associated virus, retrovirus, and lentivirus.
[0064] In some embodiments, pharmaceutical compositions and methods of the disclosure provide for delivery of a nucleic acid sequence (e.g., cDNA sequence) encoding an anti-VEGF agent, a functional fragment or variant thereof, to retinal cells in a human subject or patient in need thereof (e.g., a patient diagnosedwith AMD, RVO,DME). Delivery of the nucleic acid of a therapeutic transgene toapatient usingadelivery system, suchas rAAVora viral vector, is also referred to as gene therapy.
[0065] In some embodiments, delivery of anti-VEGF agent nucleic acid sequence can be performed using any suitable "vector" (also referred to as "gene delivery" or "gene transfer vehicle"). Vector (e.g., rAAV), delivery vehicle, gene delivery vehicle or gene transfer vehicle, can encompass any suitable macromolecule or complex of molecules comprising a polynucleotide to be delivered to a target cell, e.g., retinal cells, including photoreceptor, a retinal ganglion cell, a Müller cell, a bipolar cell, an amacrine cell, a horizontal cell, or a retinal pigmented epitheliumcell. In some cases, a target cell can be any cell to which the nucleic acid molecule or gene is delivered. The polynucleotide to be delivered can comprise a coding sequence of a therapeutic transgene, such as a sequence that encodes ranibizumab.
[0066] The composition and methods of the disclosure provide for any suitable method for delivery of anti-VEGF (e.g., ranibizumab) nucleic acid sequence into an eye or retinal cells of a non-human primate or human subject. In some cases, delivery of the nucleic acidmolecule, polynucleotide, or gene therapy is formulated or adapted for intravitreal injection into an eye of a non-human primate or human subject.
[0067] In someembodiments, suitable vectors include, but are not limited to, viral vectors suchasadenoviruses, adeno- associated viruses (AAV), and retroviruses, retrovirus, lentivirus, liposomes, lipid-containing complexes, nanoparticles, and other macromolecular complexes capable of delivery of a polynucleotide to retinal cells. In some embodiments, the viral vector comprises a strong eukaryotic promoter operably linked to the polynucleotide e.g., a cytomegalovirus (CMV) promoter or a constitutive promoter.
[0068] In some embodiments, a vector comprises a recombinant viral vector that incorporates one ormore nucleic acid molecules. As described herein, nucleic acids refer to polynucleotides. Nucleic acid and polynucleotide may be used interchangeably. In some embodiments, nucleic acids comprise DNA or RNA. In some cases, nucleic acids include DNA (e.g., cDNA) or RNA for the expression of an anti-VEGF agent or therapeutic transgene. In some embodiments, RNA can include a transcript of a gene of interest (e.g., ranibizumab), introns, untranslated regions (UTRs), termination sequences and the like. In other embodiments, DNA can include, but are not limited to, sequences such as promoter sequences, a gene of interest (e.g. ranibizumab), UTRs, termination sequences, and the like. In some cases, a combination of DNAand RNA can be used.
[0069] In some embodiments, the present disclosure provides a recombinant virus, such as recombinant adeno- associated virus (rAAV) as a vector for delivery and expression of ranibizumab, bevacizumab, sFLT‑1, or any functional fragment or variant thereof, in a subject.
[0070] In some embodiments, any suitable viral vectors can be engineered or optimized for use with the compositions andmethods of the disclosure. For example, recombinant viral vectors derived fromadenovirus (Ad) or adeno-associated virus (AAV) can be altered such that it is replication-defective in human or primate subjects. In some embodiments, hybrid viral vector systems can be obtained using methods known to one skilled in the art and used to deliver a nucleic acid encodingananti-VEGFagent to retinal cells. In someembodiments, aviral delivery systemorgene therapycan integratea nucleic acid sequence comprising an anti-VEGF gene into the target cell genome (e.g., genome of retinal cells) and result in stablegeneexpressionof thegeneover time. In someembodiments, theanti-VEGFgene isnot integrated into the target cell genome, and is expressed from a plasmid or vector introduced into the target cells.
[0071] In some embodiments, a suitable viral vector for delivering a nucleic acid sequence of an anti-VEGF to retinal cells is AAV or rAAV, which are small non-enveloped single-stranded DNA viruses. rAAV are non-pathogenic human parvoviruses and can be made to be dependent on helper viruses, including adenovirus, herpes simplex virus, vaccinia virus andCMV, for replication. Exposure towild-type (wt) AAV is not associated or known to cause any humanpathologies and is common in the general population, making AAVor rAAVa suitable delivery system for gene therapy. AAVand rAAV used for gene therapy for delivery of a therapeutic transgene, e.g., ranibizumab, can be of any serotype. In some embodiments, pharmaceutical compositions andmethods of the disclosure provide for use of any suitable AAV serotype, including AAV1, AAV2, AAV2.5, AAV3, AAV4, AAV5, AAV6, AAV7, AAV8, AAV9, AAV10, AAV11, AAV12, rh10, AAV-DJ, 10 EP 4 674 483 A2 5 10 15 20 25 30 35 40 45 50 55 and any hybrid or chimeric AAV thereof. In some embodiments, the serotype used is based on tropism of the virus, or infectivity of a target cell of interest. In some embodiments, AAV2 or rAAV2 is used to deliver a nucleic acid sequence encoding ranibizumab into an eye or retinal cells of a subject via intravitreal or subretinal injection. In some embodiments, rAAV2.7m8 is used to deliver the nucleic acid sequence of ranibizumab into the retinal cells of a subject.
[0072] In some embodiments, AAV or rAAV viruses, particles, or virions comprising a variant capsid protein having increased infectivity of target cells, e.g. retinal cells, are used to increase transduction of retinal cells or to increase targeting of gene delivery to retinal cells in a subject. In some embodiments, the rAAV virion comprises an amino acid modification in a capsid protein GH loop / loop IV of the AAV capsid protein. In some cases, the site of modification is a solvent-accessible portion of the GH loop / loop IV of the AAV capsid protein. Several AAV capsid variants are known, including the 7m8 variant. In some embodiments, a rAAV virion comprises a variant AAV capsid protein that comprises an insertion of from5aminoacids to 11aminoacids, e.g., 7 aminoacid sequence, in theGH loopof a capsid protein relative to a corresponding parental AAV capsid protein, and wherein the variant capsid protein confers increased infectivity of a retinal cell compared to the infectivity of the retinal cell by an AAV virion comprising the corresponding parental or unmodified AAV capsid protein. In some embodiments, an insertion of any one of the following amino acid sequences can be inserted in the GH loop of a capsid protein: LGETTRP (7m8), NETITRP, KAGQANN, KDPKTTN, KDTDTTR, RAGGSVG, AVDTTKF, and STGKVPN. In some embodiments, rAAV.7m8 comprising ranibizumab is used for gene therapy.
[0073] In some embodiments, any one of the following amino acid sequences: NETITRP, KAGQANN, KDPKTTN, KDTDTTR,RAGGSVG,AVDTTKF,andSTGKVPNcanbe insertedat the followingpositions togeneratea rAAVvariant for use in gene therapy: between positions 587 and 588 of the AAV2 capsid protein; between amino acids 590 and 591 of the AAV1 capsid protein; between amino acids 575 and 576 of the AAV5 capsid protein; between amino acids 590 and 591 of theAAV6capsid protein; betweenamino acids 589and590of theAAV7capsid protein; betweenamino acids 590and591 of theAAV8capsidprotein; betweenaminoacids588and589of theAAV9capsidprotein; or betweenaminoacids589and 590 of the AAV10 capsid protein.
[0074] In some embodiments, the nucleic acid encoding a gene product such as ranibizumab can be under transcrip- tional control by a promoter that initiates transcription of the gene. In some embodiments, the promoter is a "strong" or constitutively active promoter, e.g., CMV promoter. In some embodiment, the connexin 36 promoter is used to drive expressionof a therapeutic transgene, e.g., ranibizumab. In someembodiments, tissue-specific promoters canbeused to effect transcription in specific tissuesor cells, suchas retinal cells, to reducepotential toxicity or undesirable effects to non- targeted cells. In some embodiments, a recombinant virus and / or plasmid used to generate a rAAV virus can comprise other transcriptional or regulatory elements, such as poly A (polyadenylation) sequence, untranslated regions (UTRs), 3’ UTRs, or termination sequences. In some embodiments, more than one genes can be expressed from the vector or plasmid using internal ribosome entry site (IRES) or similar elements that allow coexpression of two or more proteins or create multigene, or polycistronic mRNA.
[0075] In some embodiments, the rAAVand / or plasmid used to generate rAAV viruses comprises the following nucleic acid elements: a first ITR sequence; a promoter sequence; an intron sequence; a first UTR sequence; a sequence encoding an anti-VEGF transgene; a second UTR sequence; a polyA sequence; and a second ITR sequence. In some embodiments, a linker sequence is used between each of these nucleic acid elements. In some embodiments, the sequenceencodingananti-VEGF transgenecomprisesasequenceencoding theanti-VEGF transgene fusionproteinora functional fragment thereof.
[0076] In some embodiments, the viral vector of the disclosure is measured as vector genomes. In some cases, a unit doseof recombinant virusesof thisdisclosurecomprisebetween1×1010 to2×1010, between2×1010 to3×1010, between 3×1010 to 4×1010, between 4×1010 to 5×1010, between 5×1010 to 6×1010, between 6×1010 to 7×1010, between 7×1010 to 8×1010, between 8×1010 to 9×1010, between 9×1010 to 10×1010, between 1×1011 to 2×1011, between 2×1011 to 3×1011, between3×1011 to 4×1011, between4×1011 to 5×1011, between5×1011 to 6×1011, between6×1011 to 7×1011, between 7×1011 to 8×1011, between 8×1011 to 9×1011, between 9×1011 to 10×1011, between 1×1012 to 2×1012, between 2×1012 to 3×1012, between 3×1012 to 4×1012, between 4×1012 to 5×1012, between 5×1012 to 6×1012, between 6×1012 to 7×1012, between 7×1012 to 8×1012, between 8×1012 to 9×1012, between 9×1012 to 10×1012, between 1×1013 to 2×1013, between 2×1013 to 3×1013, between 3×1013 to 4×1013, between 4×1013 to 5×1013, between 5×1013 to 6×1013, between 6×1013 to 7×1013, between 7×1013 to 8×1013, between 8×1013 to 9×1013, or between 9×1013 to 10×1013 vector genomes. In some embodiments, the rAAV of this disclosure is about 2.1×1012 vector genomes. In some embodiments, the rAAV of this disclosure is between 1010 to 1013, between 1010 to 1011, between 1011 to 1012, between 1012 to 1013, between 1013 to 1014, between 2×1011 to 4×1011, between 3×1011 to 5×1011, between4×1011 to6×1011, between5×1011 to7×1011, between6×1011 to8×1011, between7×1011 to9×1011, between 8×1011 to 10×1011, between 1×1012 to 3×1012, between 2×1012 to 4×1012, between 3×1012 to 5×1012, between 4×1012 to 6×1012, between 5×1012 to 7×1012, between 6×1012 to 8×1012, between 7×1012 to 9×1012, between 8×1012 to 10×1012, between 1×1013 to 5×1013, between 5×1013 to 10×1013, between 1012 to 5×1012, or between 5×1012 to 1×1013 vector genomes. 11 EP 4 674 483 A2 5 10 15 20 25 30 35 40 45 50 55
[0077] In somecases, recombinant viruses of this disclosure are about 1E10, about 1.5E10, about 2E10, about 2.5E10, about 3E10, about 3.5E10, about 4E10, about 4.5E10, about 5E10, about 5.5E10, about 6E10, about 6.5E10, about 7E10, about 7.5E10, about 8E10, about 8.5E10, about 9E10, about 9.5E10, about 10E10, about 1E11, about 1.5E11, about 2E11, about 2.5E11, about 3E11, about 3.5E11, about 4E11, about 4.5E11, about 5E11, about 5.5E11, about 6E11, about 6.5E11, about 7E11, about 7.5E11, about 8E11, about 8.5E11, about 9E11, about 9.5E11, about 10E11, about 1E12, about 1.3E12, about 1.5E12, about 2E12, about 2.1E12, about 2.3E12, about 2.5E12, about 2.7E12, about 2.9E12, about 3E12, about 3.1E12, about 3.3E12, about 3.5E12, about 3.7E12, about 3.9E12, about 4E12, about 4.1E12, about 4.3E12, about 4.5E12, about 4.7E12, about 4.9E12, about 5E12, about 5.1E12, about 5.3E12, about 5.5E12, about 5.7E12, about 5.9E12, about 6E12, about 6.1E12, about 6.3E12, about 6.5E12, about 6.7E12, about 6.9E12, about 7E12, about 7.1E12, about 7.3E12, about 7.5E12, about 7.7E12, about 7.9E12, about 8E12, about 8.1E12, about 8.3E12, about 8.5E12, about 8.7E12, about 8.9E12, about 9E12, about 9.1E12, about 9.3E12, about 9.5E12, about 9.7E12, about 9.9E12, about 10E12, about 10.1E12, about 10.3E12, about 10.5E12, about 10.7E12, about 10.9E12, about 11E12, about 11.5E12, about 12E12, about 12.5E12, about 13E12, about 13.5E12, about 14E12, about 14.5E12, about 15E12, about 15.5E12, about 16E12, about 16.5E12, about 17E12, about 17.5E12, about 18E12, about 18.5E12, about 19E12, about 19.5E12, about 20E12, about 20.5E12, about 30E12, about 30.5E12, about 40E12, about 40.5E12, about 50E12, about 50.5E12, about 60E12, about 60.5E12, about 70E12, about 70.5E12, about 80E12, about 80.5E12, about 90E12, about 95E12, or about 100E12, wherein E is a short-hand for base 10 for exponentiation, and xEy refers to x multiplied by base 10 to the y power / exponent.
[0078] In some embodiments, pharmaceutical compositions disclosed herein comprise recombinant viruses of at least 5E11, at least 5.5E11, at least 6E11, at least 6.5E11, at least 7E11, at least 7.5E11, at least 8E11, at least 8.5E11, at least 9E11, at least 9.5E11, at least 10E11, at least 1E12, at least 1.3E12, at least 1.5E12, at least 2E12, at least 2.1E12, at least 2.3E12, at least 2.5E12, at least 2.7E12, at least 2.9E12, at least 3E12, at least 3.1E12, at least 3.3E12, at least 3.5E12, at least 3.7E12, at least 3.9E12, at least 4E12, at least 4.1E12, at least 4.3E12, at least 4.5E12, at least 4.7E12, at least 4.9E12, at least 5E12, at least 5.1E12, at least 5.3E12, at least 5.5E12, at least 5.7E12, at least 5.9E12, at least 6E12, at least 6.1E12, at least 6.3E12, at least 6.5E12, at least 6.7E12, at least 6.9E12, at least 7E12, at least 7.1E12, at least 7.3E12, at least 7.5E12, at least 7.7E12, at least 7.9E12, at least 8E12, at least 8.1E12, at least 8.3E12, at least 8.5E12, at least 8.7E12, at least 8.9E12, at least 9E12, at least 9.1E12, at least 9.3E12, at least 9.5E12, at least 9.7E12, at least 9.9E12, at least 10E12, at least 10.1E12, at least 10.3E12, at least 10.5E12, at least 10.7E12, at least 10.9E12, at least 11E12, at least 11.5E12, at least 12E12, at least 12.5E12, at least 13E12, at least 13.5E12, at least 14E12, at least 14.5E12, at least 15E12, at least 15.5E12, at least 16E12, at least 16.5E12, at least 17E12, at least 17.5E12, at least 18E12, at least 18.5E12, at least 19E12, at least 19.5E12, at least 20E12, at least 20.5E12, at least 30E12, at least 30.5E12, at least 40E12, at least 40.5E12, at least 50E12, at least 50.5E12, at least 60E12, at least 60.5E12, at least 70E12, at least 70.5E12, at least 80E12, at least 80.5E12, at least 90E12, at least 95E12, or at least 100E12 vector genomes,whereinE is a short-hand for base10 for exponentiation, andwherein xEy refers to xmultipliedbybase10 to the y power / exponent.
[0079] In some embodiments, viral vector of the disclosure is measured using multiplicity of infection (MOI). In some cases,MOI refers to the ratio, ormultiple of vector or viral genomes to the cells towhich thenucleic acid canbedelivered. In some cases, the MOI is 1×106. In some cases, recombinant viruses of the disclosure can be at least 1×101, 1×102, 1×103, 1×104, 1×105, 1×106 , 1×107, 1×108 , 1×109 , 1×1010, 1×1011, 1×1012, 1×1013, 1×1014, 1×1015, 1×1016, 1×1017 and 1×1018 MOI. In some cases, recombinant viruses of this disclosure can be from 1×108 to 1×1015 MOI. In somecases, recombinant virusesof thedisclosurecanbeatmost 1×101, 1×102, 1×103, 1×104 , 1×105 , 1×106 , 1×107, 1×108 , 1×109 , 1×1010, 1×1011, 1×1012, 1×1013 1×1014, 1×1015, 1×1016, 1×1017, and 1×1018 MOI.
[0080] In some embodiments, the nucleic acid may be delivered without the use of a virus (i.e., with a non-viral vector), andmay bemeasured as the quantity of nucleic acid. Generally, any suitable amount of nucleic acidmay be usedwith the pharmaceutical compositions andmethods of this disclosure. In some cases, nucleic acid is at least 1 pg, 10 pg, 100 pg, 1 pg, 10pg, 100pg, 200pg, 300pg, 400pg, 500pg, 600pg, 700pg, 800pg, 900pg, 1µg, 10µg, 100µg, 200µg, 300µg, 400 µg, 500µg, 600µg, 700µg, 800µg, 900µg, 1 ng, 10 ng, 100 ng, 200 ng, 300 ng, 400 ng, 500 ng, 600 ng, 700 ng, 800 ng, 900ng, 1mg, 10mg, 100mg, 200mg, 300mg, 400mg, 500mg, 600mg, 700mg, 800mg, 900mg1g, 2g, 3 g, 4 g, or 5 g. In somecases, nucleicacidmaybeatmostabout 1pg, 10pg, 100pg, 1pg, 10pg, 100pg, 200pg, 300pg, 400pg, 500pg, 600 pg, 700 pg, 800 pg, 900 pg, 1µg, 10µg, 100µg, 200µg, 300µg, 400µg, 500µg, 600µg, 700µg, 800µg, 900µg, 1 ng, 10 ng, 100ng, 200ng, 300ng, 400ng, 500ng, 600ng, 700ng, 800ng, 900ng, 1mg, 10mg, 100mg, 200mg, 300mg, 400mg, 500 mg, 600 mg, 700 mg, 800 mg, 900 mg, 1 g, 2 g, 3 g, 4 g, or 5 g.
[0081] In some embodiments, a self-complementary vector (sc) can be used. The use of self-complementary AAV vectors may bypass the requirement for viral second-strand DNA synthesis andmay lead to greater rate of expression of the transgene protein, as provided by Wu, Hum Gene Ther. 2007, 18(2):171‑82, incorporated by reference herein.
[0082] In some aspects, several AAV vectors may be generated to allow selection of the most optimal serotype and promoter for use with the anti-VEGF transgene.
[0083] In some cases, the vector can be a targeted vector, especially a targeted rAAV (e.g., AAV2.7m8) that shows 12 EP 4 674 483 A2 5 10 15 20 25 30 35 40 45 50 55 higher infectivity of a specific cell, suchas retinal cells, or aphotoreceptor, a retinal ganglion cell, aMüller cell, a bipolar cell, an amacrine cell, a horizontal cell, or a retinal pigmented epithelium cell. Viral vectors for use in the disclosure can include those that exhibit low toxicity and / or low immunogenicity in a subject and expresses therapeutically effective quantities of an anti-VEGF transgene in a subject, e.g., human patient.
[0084] Disclosed herein are pharmaceutical compositions and methods for delivering a nucleic acid encoding an anti- VEGF agent into a target retinal cell of a subject using the a rAAV comprising a 7m8 variant capsid protein, or rAAV2.7m8, and a nucleic acid sequence that encodes an anti-VEGF transgene in a non-human primate or a human subject. In some instances, the delivery of an anti-VEGF agent via gene therapy can be used to at least partially ameliorate or prevent an ocular disease or condition disclosed herein.
[0085] In someembodiments, the increase in retinal cell infectivity of rAAVvariant (e.g., the7m8variant) isat least 5%,at least 10%,at least 20%,at least 30%,at least 40%,at least 50%,at least 60%,at least 70%,at least 80%,at least 90%,or at least 100% as compared to an AAV virion comprising the corresponding parental or unmodified AAV capsid protein. In some embodiments, the increase in infectivity of retinal cells is an increase of between 5% to 100%, between 5% to 95%, between 5% to 90%, between 5% to 85%, between 5% to 80%, between 5% to 75%, between 5% to 70%, between 5% to 65%, between 5% to 60%, between 5% to 55%, between 5% to 50%, between 5% to 45%, between 5% to 40%, between 5% to 35%, between 5% to 30%, between 5% to 25%, between 5% to 20%, between 5% to 15%, between 5% to 10% as compared to an AAV virion comprising the corresponding parental or unmodified AAV capsid protein.
[0086] In some embodiments, the increase in retinal cell infectivity of a rAAV variant is at least 1-fold, at least 1.1-fold, at least 1.2-fold, at least 1.3-fold, at least 1.4-fold, at least 1.5-fold, at least 1.6-fold, at least 1.7-fold, at least 1.8-fold, at least 1.9-fold, or at least 2-fold compared to an AAV virion comprising the corresponding parental or unmodified AAV capsid protein. In some embodiments, the increase in infectivity is at least 2-fold, at least 3-fold, at least 4-fold, at least 5-fold, at least 6-fold, at least 7-fold, at least 8-fold, at least 9-fold, or at least 10-fold as compared to an AAV virion comprising the correspondingparental AAVcapsid protein. In someembodiments, the increase in infectivity is at least 15-fold, at least 20- fold, at least 25-fold, at least 30-fold, at least 35-fold, at least 40-fold, at least 45-fold, at least 50-fold, at least 55-fold, at least 60-fold, at least 65-fold, at least 70-fold, at least 75-fold, at least 80-fold, at least 85-fold, at least 90-fold, or at least 100-fold compared to an AAV virion comprising the corresponding parental or unmodified AAV capsid protein.
[0087] In someembodiments, the increase in retinal cell infectivity is between10-fold to 100-fold, between10-fold to 95- fold, between 10-fold to 90-fold, between 10-fold to 85-fold, between 10-fold to 80-fold, between 10-fold to 75-fold, between10-fold to 70-fold, between10-fold to 65-fold, between10-fold to 60-fold, between10-fold to 55-fold, between10- fold to 50-fold, between 10-fold to 45-fold, between 10-fold to 40-fold, between 10-fold to 35-fold, between 10-fold to 30- fold, between 10-fold to 25-fold, between 10-fold to 20-fold, or between 10-fold to 15-fold as compared to an AAV virion comprising the corresponding parental or unmodified AAV capsid protein.
[0088] In someembodiments, the increase in retinal cell infectivity is between2-fold to20-fold, between2-fold to19-fold, between 2-fold to 18-fold, between 2-fold to 17-fold, between 2-fold to 16-fold, between 2-fold to 15-fold, between 2-fold to 14-fold, between 2-fold to 13-fold, between 2-fold to 12-fold, between 2-fold to 11-fold, between 2-fold to 10-fold, between 2-fold to 9-fold, between 2-fold to 8-fold, between 2-fold to 7-fold, between 2-fold to 6-fold, between 2-fold to 5-fold, between2-fold to4-fold, or between2-fold to3-foldascompared toanAAVvirion comprising thecorrespondingparental or unmodified AAV capsid protein.
[0089] In some embodiments, an amino acidmodification of a capsid protein described herein can confer an increase in an ability to cross an internal limitingmembrane (ILM) in an eye of a primate or human subject as compared to the ability of an AAV virion comprising the corresponding parental or unmodified AAV capsid protein to cross the ILM in the eye of the subject. In someembodiments, the increase in theability to cross the ILM isan increaseof at least 5%,at least 10%,at least 20%, at least 30%, at least 40%, at least 50%, at least 60%, at least 70%, at least 80%, at least 90%, or at least 100% as compared to an AAV virion comprising the corresponding parental or unmodified AAV capsid protein. In some embodi- ments, the increase in the ability to cross the ILM is an increase of between 5% to 100%, between 5% to 95%, between 5% to90%,between5%to85%,between5% to80%,between5% to75%,between5% to70%, between5% to65%,between 5% to 60%, between 5% to 55%, between 5% to 50%, between 5% to 45%, between 5% to 40%, between 5% to 35%, between5%to30%,between5%to25%,between5%to20%,between5%to15%,orbetween5%to10%ascompared to the parental or unmodified AAV capsid protein.
[0090] In some embodiments, the increase in the ability to cross the ILM is at least 1-fold, at least 1.1-fold, at least 1.2- fold, at least 1.3-fold, at least 1.4-fold, at least 1.5-fold, at least 1.6-fold, at least 1.7-fold, at least 1.8-fold, at least 1.9-fold, or at least 2-fold compared to an AAV virion comprising the corresponding parental AAV capsid protein. In some embodi- ments, the increase in the ability to cross the ILM is at least 2-fold, at least 3-fold, at least 4-fold, at least 5-fold, at least 6- fold, at least 7-fold, at least 8-fold, at least 9-fold, or at least 10-fold as compared to an AAV virion comprising the correspondingparental AAVcapsidprotein. In someembodiments, the increase in theability to cross the ILM isat least 15- fold, at least 20-fold, at least 25-fold, at least 30-fold, at least 35-fold, at least 40-fold, at least 45-fold, at least 50-fold, at least 55-fold, at least 60-fold, at least 65-fold, at least 70-fold, at least 75-fold, at least 80-fold, at least 85-fold, at least 90- fold, or at least 100-fold compared to an AAV virion comprising the corresponding parental or unmodified AAV capsid 13 EP 4 674 483 A2 5 10 15 20 25 30 35 40 45 50 55 protein.
[0091] In someembodiments, the increase in the ability to cross the ILM is between 10-fold to 100-fold, between 10-fold to 95-fold, between 10-fold to 90-fold, between 10-fold to 85-fold, between 10-fold to 80-fold, between 10-fold to 75-fold, between10-fold to 70-fold, between10-fold to 65-fold, between10-fold to 60-fold, between10-fold to 55-fold, between10- fold to 50-fold, between 10-fold to 45-fold, between 10-fold to 40-fold, between 10-fold to 35-fold, between 10-fold to 30- fold, between 10-fold to 25-fold, between 10-fold to 20-fold, or between 10-fold to 15-fold as compared to an AAV virion comprising the corresponding parental or unmodified AAV capsid protein.
[0092] In some embodiments, the increase in the ability to cross the ILM is between 2-fold to 20-fold, between 2-fold to 19-fold, between 2-fold to 18-fold, between 2-fold to 17-fold, between 2-fold to 16-fold, between 2-fold to 15-fold, between 2-fold to 14-fold, between 2-fold to 13-fold, between 2-fold to 12-fold, between 2-fold to 11-fold, between 2-fold to 10-fold, between 2-fold to 9-fold, between 2-fold to 8-fold, between 2-fold to 7-fold, between 2-fold to 6-fold, between 2-fold to 5- fold, between 2-fold to 4-fold, or between 2-fold to 3-fold as compared to an AAV virion comprising the corresponding parental or unmodified AAV capsid protein.
[0093] In some embodiments, the vector can be a retroviral vector. Retroviral vectors can include Moloney murine leukemia viruses and HIV-based viruses. In some embodiments a HIV-based viral vector can be used, wherein the HIV- basedviral vector comprisesat least two vectorswherein thegagandpol genesare fromanHIVgenomeand theenvgene is from another virus. In some embodiments, DNA viral vectorsmay be used. These vectors can include pox vectors such as orthopox or avipox vectors, herpesvirus vectors such as a herpes simplex I virus (HSV) vector [Geller, A. I. et al., J. Neurochem, 64: 487 (1995); Lim, F., et al., in DNA Cloning: Mammalian Systems, D. Glover, Ed. (Oxford Univ. Press, OxfordEngland) (1995);Geller, A. I. et al., ProcNatl. Acad.Sci.:U.S.A.: 907603 (1993);Geller,A. I., et al., ProcNatl. Acad. Sci. USA: 87:1149 (1990)], Adenovirus Vectors [LeGal LaSalle et al., Science, 259:988 (1993); Davidson, et al., Nat. Genet. 3: 219 (1993); Yang, et al., J. Virol. 69: 2004 (1995)] andAdeno-associated Virus Vectors [Kaplitt, M.G., et al., Nat. Genet. 8:148 (1994)], incorporated by reference herein in their entirety.
[0094] In some embodiments, the vector can be a lentiviral vector. Lentiviral vectors for use in the disclosure may be derived from human and non-human (including SIV) lentiviruses. Examples of lentiviral vectors can include nucleic acid sequences required for vector propagation as well as a tissue-specific promoter operably linked to an anti-VEGF protein gene. Nucleic acid sequences may include the viral LTRs, a primer binding site, a polypurine tract, att sites, and an encapsidation site.
[0095] In some embodiments, the vector can be an alphavirus vector. Alphavirus-based vectors such as those made fromsemliki forest virus (SFV) and sindbis virus (SIN)mayalso beused in thedisclosure.Useof alphaviruses is described in Lundstrom, K., Intervirology 43:247‑257, 2000 andPerri et al., Journal of Virology 74:9802‑9807, 2000, incorporated by reference herein in their entirety.
[0096] In some embodiments, the vector can be a pox viral vector. Pox viral vectors may introduce a gene into the cell’s cytoplasm. Avipox virus vectorsmay result in only a short termexpression of the gene or nucleic acid. Adenovirus vectors, adeno-associated virus vectors and herpes simplex virus (HSV) vectorsmay be usedwith the compositions andmethods of the disclosure. The adenovirus vector may result in a shorter term expression (e.g., less than about a month) than adeno-associated virus, in some aspects, and may exhibit much longer expression. The particular vector chosen may depend upon the target cell and the condition being treated.
[0097] Disclosed herein are compositions andmethods for delivering a nucleic acid encoding a gene product of interest into a target cell of a subject. In some instances, the gene product of interest is delivered to the subject after administration of a vector comprising thegeneproduct. In some instances, thedeliveryof thegeneproduct canbeused toat least partially ameliorate or to treat a disease or condition disclosed herein. In some instances, the composition can be used as a gene therapy or is adapted for gene therapy or delivery of an anti-VEGF in vivo.
[0098] In some instances, vector, delivery vehicle, gene delivery vehicle, or gene transfer vehicle refer to any suitable macromolecule or complex ofmolecules comprising apolynucleotide to bedelivered to a target cell, tissue, or a subject. In some cases, a target cell may be any cell to which the nucleic acid or gene is delivered.
[0099] In someembodiments, vectors, e.g., nakedDNAor aplasmid, canbedelivered intoacell, tissue, or subject using micelles; microemulsions; liposomes; nanospheres; nanoparticles; nanocapsules; solid lipid nanoparticles; dendrimers; polyethylenimine derivative and singlewalled carbon nanotubes; and other macromolecular complexes capable of mediating delivery of a polynucleotide to a target cell. In some cases, a vector may be an organic or inorganic molecule. In some cases, a vector is a small molecule (i.e., <5 kD), or a macromolecule (i.e., >5 kD).
[0100] In someembodiments, a vector comprises a recombinant viral vector (e.g., rAAVvector) that incorporates oneor more nucleic acids. As described herein, nucleic acids can comprise polynucleotides. In some instances, nucleic acids comprise DNA or RNA. In some cases, nucleic acids include DNA or RNA for the expression of a gene product, or an aptamer. In some cases RNA molecules may include a transcript of a gene of interest, introns, untranslated regions, termination sequencesand the like. In other cases,DNAmoleculesmay include sequences suchashybrid promoter gene sequences, strong constitutive promoter sequences, a gene of interest, untranslated regions, termination sequences and the like. In some cases, any combination of DNA and RNA may be used. 14 EP 4 674 483 A2 5 10 15 20 25 30 35 40 45 50 55
[0101] In someembodiments, thepresentdisclosureprovidesa recombinant virusasavector tomediate theexpression of a gene product, or a gene therapy for delivering a gene product to target cells or a subject in vivo, e.g., an eye or vitreous of an eye. Any suitable recombinant viral vector can be engineered to be optimized for use with the compositions and methods of the disclosure. For example, recombinant viral vectors derived from adenovirus (Ad) or adeno-associated virus (AAV) can be used.
[0102] Both humanandnon-humanviral vectors canbeusedand the recombinant viral vector canbealtered such that it is replication-defective in humans or in a subject. In some embodiments, the vector can be a replication-defective adenovirus or rAAV, comprising apolynucleotide havingapromoter operably linked to a therapeutic transgeneencoding a gene product or a therapeutic agent, such as an anti-VEGF agent.
[0103] In some embodiments, the vector can be a retroviral vector. Retroviral vectors can include Moloney murine leukemia viruses and HIV-based viruses. In some embodiments a HIV-based viral vector can be used, wherein the HIV- basedviral vector comprisesat least two vectorswherein thegagandpol genesare fromanHIVgenomeand theenvgene is from another virus. In some embodiments, DNA viral vectorsmay be used. These vectors can include pox vectors such as orthopox or avipox vectors, herpesvirus vectors such as a herpes simplex I virus (HSV) vector [Geller, A. I. et al., J. Neurochem, 64: 487 (1995); Lim, F., et al., in DNA Cloning: Mammalian Systems, D. Glover, Ed. (Oxford Univ. Press, OxfordEngland) (1995);Geller, A. I. et al., ProcNatl. Acad.Sci.:U.S.A.: 907603 (1993);Geller,A. I., et al., ProcNatl. Acad. Sci. USA: 87:1149 (1990)], Adenovirus Vectors [LeGal LaSalle et al., Science, 259:988 (1993); Davidson, et al., Nat. Genet. 3: 219 (1993); Yang, et al., J. Virol. 69: 2004 (1995)] andAdeno-associated Virus Vectors [Kaplitt, M.G., et al., Nat. Genet. 8:148 (1994)], incorporated by reference herein in their entirety.
[0104] In some embodiments, the vector can be a lentiviral vector. Lentiviral vectors for use in the disclosure may be derived from human and non-human (including SIV) lentiviruses. Examples of lentiviral vectors can include nucleic acid sequences required for vector propagation as well as a tissue-specific promoter operably linked to an anti-VEGF protein gene. Nucleic acid sequences may include the viral LTRs, a primer binding site, a polypurine tract, att sites, and an encapsidation site.
[0105] In some embodiments, adenovirus vectors, adeno-associated virus vectors, and herpes simplex virus (HSV) vectors can be used with the compositions and methods of the disclosure. The particular vector (e.g., lentivirus, adenovirus, or AAV) used can depend upon the target cell, the size of the therapeutic transgene or agent to be expressed from the vector, and / or the condition being treated.
[0106] In some embodiments, the vector is an adeno-associated virus (AAV) vector or is derived from AAV. AAV are small non-envelopedsingle-strandedDNAviruses. Theyarenon-pathogenichumanparvovirusesandmaybedependent on helper viruses, including adenovirus, herpes simplex virus, vaccinia virus and CMV, for replication. Exposure to a wild- type AAV may not be associated or known to cause any human pathologies and is common in the general population, usually occurring in the first decade of life in association with an adenoviral infection.
[0107] In some instances, the rAAVcanbeanativeorwild-typeAAVof serotype1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, orDJ. In some instances, the rAAV can be a chimeric AAV comprising capsid proteins from at least two serotypes. In some embodiments, a rAAV virus or virion can comprise a variant AAV capsid protein. In some cases, the variant AAV capsid protein can comprise an amino acid modification selected from the group consisting of a substitution, an insertion, a deletion, and any combination thereof; relative to a corresponding parental AAV capsid protein.
[0108] In someembodiments, the rAAVvirion can comprise adeletion of at least 1, at least 2, at least 3, at least 4, at least 5, at least 6, at least 7, at least 8, at least 9, at least 10,at least 11, at least 12, at least 13, at least 14, at least 15, at least 16, at least 17, at least 18, at least 19, or at least 20 amino acids in a capsid protein relative to a corresponding parental AAV capsid protein. In someembodiments, the rAAVvirion can comprise adeletion of at least 20, at least 25, at least 30, at least 35, at least 40, at least 45, at least 50, at least 55, at least 60, at least 65, at least 70, at least 75, at least 80, at least 85, at least 90, at least 95 or at least 100 amino acids in a capsid protein. In some embodiments, the rAAV virion can comprise a deletion of at most about 100 amino acids, at most about 200, at most about 300, or at most about 400 amino acids in a capsidprotein. In someembodiments, the rAAVvirion cancompriseadeletionof fromabout 1 toabout 100, fromabout 1 to about 90, fromabout 1 to about 80, fromabout 1 to about 70, fromabout 1 to about 60, fromabout 1 to about 50, fromabout 1 to about 40, fromabout 1 to about 30, fromabout 1 to about 20, fromabout 1 to about 15, fromabout 1 to about 10, or from about 1 to about 5 amino acids in a capsid protein. In some embodiments, the rAAV virion can comprise a deletion of from about 5 amino acids to about 20 amino acids, from about 5 amino acids to about 19 amino acids, from about 5 amino acids to about 18 amino acids, from about 5 amino acids to about 17 amino acids, from about 5 amino acids to about 16 amino acids, from about 5 amino acids to about 15 amino acids, from about 5 amino acids to about 14 amino acids, from about 5 aminoacids to about 13amino acids, fromabout 5 aminoacids to about 12 aminoacids, fromabout 5 amino acids to about 11 amino acids, from about 5 amino acids to about 10 amino acids, from about 5 amino acids to about 9 amino acids, from about 5 amino acids to about 8 amino acids, from about 5 amino acids to about 7 amino acids, or from about 5 amino acids to about 6 amino acids in a capsid protein.
[0109] In some embodiments, the rAAV virion can comprise an insertion of at least 1, at least 2, at least 3, at least 4, at least 5, at least 6, at least 7, at least 8, at least 9, at least 10, at least 11, at least 12, at least 13, at least 14, at least 15, at least 15 EP 4 674 483 A2 5 10 15 20 25 30 35 40 45 50 55 16, at least 17, at least 18, at least 19, or at least 20aminoacids in acapsidprotein relative to acorrespondingparental AAV capsid protein. In some embodiments, the rAAV virion can comprise an insertion of at least 20, at least 25, at least 30, at least 35, at least 40, at least 45, at least 50, at least 55, at least 60, at least 65, at least 70, at least 75, at least 80, at least 85, at least 90, at least 95 or at least 100 amino acids in a capsid protein. In some embodiments, the rAAV virion can comprise an insertion of atmost about 100 amino acids, atmost about 200, atmost about 300, or atmost about 400 amino acids in a capsid protein. In someembodiments, the rAAVvirion can comprise an insertion of fromabout 1 to about 100, fromabout 1 to about 90, from about 1 to about 80, from about 1 to about 70, from about 1 to about 60, from about 1 to about 50, from about1 toabout40, fromabout1 toabout30, fromabout1 toabout20, fromabout1 toabout15, fromabout1 toabout10,or fromabout 1 to about 5aminoacids in acapsid protein. In someembodiments, the rAAVvirion cancomprise an insertion of from about 5 amino acids to about 20 amino acids, from about 5 amino acids to about 19 amino acids, from about 5 amino acids to about 18 amino acids, from about 5 amino acids to about 17 amino acids, from about 5 amino acids to about 16 amino acids, from about 5 amino acids to about 15 amino acids, from about 5 amino acids to about 14 amino acids, from about 5 amino acids to about 13 amino acids, from about 5 amino acids to about 12 amino acids, from about 5 amino acids to about 11 amino acids, from about 5 amino acids to about 10 amino acids, from about 5 amino acids to about 9 amino acids, from about 5 amino acids to about 8 amino acids, from about 5 amino acids to about 7 amino acids, or from about 5 amino acids to about 6 amino acids in a capsid protein.
[0110] In some embodiments, the rAAV virion can comprise a substitution of at least 1, at least 2, at least 3, at least 4, at least 5, at least 6, at least 7, at least 8, at least 9, at least 10, at least 11, at least 12, at least 13, at least 14, at least 15, at least 16, at least 17, at least 18, at least 19, or at least 20aminoacids in acapsidprotein relative to acorrespondingparental AAV capsid protein. In someembodiments, the rAAV virion can comprise a substitution of fromabout 1 amino acids to about 20 amino acids, from about 1 amino acids to about 19 amino acids, from about 1 amino acids to about 18 amino acids, from about 1 amino acids to about 17 amino acids, from about 1 amino acids to about 16 amino acids, from about 1 amino acids to about 15 amino acids, from about 1 amino acids to about 14 amino acids, from about 1 amino acids to about 13 amino acids, from about 1 amino acids to about 12 amino acids, from about 1 amino acids to about 11 amino acids, from about 1 aminoacids to about 10aminoacids, fromabout 1aminoacids to about 9aminoacids, fromabout 1aminoacids to about 8 aminoacids, fromabout 1aminoacids toabout 7aminoacids, fromabout 1aminoacids toabout 6aminoacids, fromabout 1 to about 5 aminoacids, fromabout 1 to about 4 aminoacids, fromabout 1 to about 3 aminoacids, or fromabout 1 to about 2 amino acids in a capsid protein.
[0111] In some embodiments, the rAAV virion can comprise at least about 1, at least about 2, at least about 3, at least about 4, at least about 5, at least about 6, at least about 7, at least about 8, at least about 9, at least about 10, at least about 11, at least about 12, at least about 13, at least about 14, at least about 15, at least about 16, at least about 17, at least about 18, at least about 19, or at least about 20 total aminoacid insertions, deletions or substitutions in a capsid protein relative to a corresponding parental, unmodified capsid protein. In some embodiments, the rAAV virion can comprise at least about 20, at least about 25, at least about 30, at least about 35, at least about 40, at least about 45, at least about 50, at least about 55, at least about 60, at least about 65, at least about 70, at least about 75, at least about 80, at least about 85, at least about 90, at least about 95, or at least about 100 total amino acid insertions, deletions or substitutions in a capsid protein relative toacorrespondingparental, unmodified capsidprotein. In someembodiments, the rAAVvirion cancompriseat least about 100, at least about 200, at least about 300, or at least about 400 total amino acid insertions, deletions or substitutions in a capsid protein relative to a corresponding parental, unmodified capsid protein.
[0112] In some embodiments, the rAAV virion comprises a variant capsid protein with an amino acid sequence that is at least about 50%,at least about55%,at least about60%,at least about65%,at least about70%,at least about80%,at least about 85%, at least about 86%, at least about 87%, at least about 88%, at least about 89%, at least about 90%, at least about 91%, at least about 92%, at least about 93%, at least about 94%, at least about 95%, at least about 96%, at least about 97%, at least about 98%, or at least about 99%homologous toa capsid protein of a parental, unmodifiedAAVcapsid protein.
[0113] In some cases, the modification can be after amino acid 587 of AAV2, or the corresponding residue of a capsid subunit of anotherAAVserotype. It shouldbenoted that the residue587 isbasedonanAAV2capsidprotein.Amodification can also be incorporated at a corresponding site in an AAV serotype other than AAV2 (e.g., AAV8, AAV9, etc.). Those skilled in the art would know, based on a comparison of the amino acid sequences of capsid proteins of various AAV serotypes, where a modification site corresponding to amino acid 587 of AAV2 would be in a capsid protein of any given AAV serotype. See, e.g., GenBank Accession No. NP_049542 for AAV1; GenBank Accession No. AAD13756 for AAV5; GenBank Accession No. AAB95459 for AAV6; GenBank Accession No. YP‑077178 for AAV7; GenBank Accession No. YP_077180 for AAV8; GenBank Accession No. AAS99264 for AAV9 and GenBank Accession No. AAT46337 for AAV10.
[0114] In some embodiments, the amino acidmodification is an insertion of from about 5 amino acids to about 11 amino acids in a proteinGH loop or loop IV. In someembodiments, the amino acidmodification is an insertion that comprises one or more amino acids that disrupt a solvent-exposed region of the capsid protein to include a GH loop. In some specific embodiments, themodificationcomprisesan insertionof aminoacid sequenceLGETTRPbetween residue587and588 in VP1 of AAV2. In some embodiments, other insertions or AAV2 variants can be used as a vector or gene therapy for 16 EP 4 674 483 A2 5 10 15 20 25 30 35 40 45 50 55 delivering an anti-VEGF agent into a subject, e.g., sFLT‑1, ranibizumab, or bevacizumab.
[0115] In someembodiments, an amino acidmodification of a capsid protein described herein can confer an increase in infectivity of an ocular cell compared to the infectivity of the retinal cell by an AAV virion comprising the corresponding parental or unmodifiedAAVcapsidprotein. In somecases, theocular cell canbeaphotoreceptor cell (e.g., rods; cones). In some cases, the ocular cell can be a retinal ganglion cell (RGC). In some cases, the retinal cell can be a retinal pigment epithelium (RPE) cell. In somecases, theocular cell canbeaMüller cell. In somecases, theocular cell canbeanastrocyte. In some cases, the retinal cells can include amacrine cells, bipolar cells, or horizontal cells.
[0116] In some embodiments, the increase in infectivity is an increase of at least about 5%, at least about 10%, at least about 20%, at least about 30%, at least about 40%, at least about 50%, at least about 60%, at least about 70%, at least about 80%, at least about 90%, or at least about 100% as compared to an AAV virion comprising the corresponding parental AAVcapsid protein. In someembodiments, the increase in infectivity is an increase of betweenabout 5% toabout 100%,betweenabout5%toabout95%,betweenabout5%toabout90%,betweenabout5%toabout85%,betweenabout 5% to about 80%, between about 5% to about 75%, between about 5% to about 70%, between about 5% to about 65%, betweenabout 5% toabout 60%, betweenabout 5% toabout 55%, betweenabout 5% toabout 50%, betweenabout 5% to about 45%, between about 5% to about 40%, between about 5% to about 35%, between about 5% to about 30%, between about 5% to about 25%, between about 5% to about 20%, between about 5% to about 15%, or between about 5% to about 10% as compared to an AAV virion comprising the corresponding parental AAV capsid protein.
[0117] In someembodiments, the increase in infectivity is at least about 1-fold, at least about 1.1-fold, at least about 1.2- fold, at least about 1.3-fold, at least about 1.4-fold, at least about 1.5-fold, at least about 1.6-fold, at least about 1.7-fold, at least about 1.8-fold, at least about 1.9-fold, or at least about 2-fold compared to an AAV virion comprising the corresponding parental AAV capsid protein. In some embodiments, the increase in infectivity is at least about 2-fold, at least about 3-fold, at least about 4-fold, at least about 5-fold, at least about 6-fold, at least about 7-fold, at least about 8- fold, at least about 9-fold, or at least about 10-fold as compared to an AAV virion comprising the corresponding parental AAVcapsidprotein. In someembodiments, the increase in infectivity is at least about15-fold, at least about 20-fold, at least about 25-fold, at least about 30-fold, at least about 35-fold, at least about 40-fold, at least about 45-fold, at least about 50- fold, at least about 55-fold, at least about 60-fold, at least about65-fold, at least about70-fold, at least about75-fold, at least about 80-fold, at least about 85-fold, at least about 90-fold, or at least about 100-fold compared toanAAVvirion comprising the corresponding parental AAV capsid protein.
[0118] In some embodiments, the increase in infectivity is between about 10-fold to about 100-fold, between about 10- fold to about 95-fold, between about 10-fold to about 90-fold, between about 10-fold to about 85-fold, between about 10- fold to about 80-fold, between about 10-fold to about 75-fold, between about 10-fold to about 70-fold, between about 10- fold to about 65-fold, between about 10-fold to about 60-fold, between about 10-fold to about 55-fold, between about 10- fold to about 50-fold, between about 10-fold to about 45-fold, between about 10-fold to about 40-fold, between about 10- fold to about 35-fold, between about 10-fold to about 30-fold, between about 10-fold to about 25-fold, between about 10- fold toabout20-fold, or betweenabout10-fold toabout15-foldascompared toanAAVvirioncomprising thecorresponding parental AAV capsid protein.
[0119] In someembodiments, the increase in infectivity is betweenabout 2-fold toabout 20-fold, betweenabout 2-fold to about 19-fold, between about 2-fold to about 18-fold, between about 2-fold to about 17-fold, between about 2-fold to about 16-fold, between about 2-fold to about 15-fold, between about 2-fold to about 14-fold, between about 2-fold to about 13- fold, between about 2-fold to about 12-fold, between about 2-fold to about 11-fold, between about 2-fold to about 10-fold, between about 2-fold to about 9-fold, between about 2-fold to about 8-fold, between about 2-fold to about 7-fold, between about 2-fold toabout 6-fold, betweenabout 2-fold to about 5-fold, betweenabout 2-fold toabout 4-fold, or betweenabout 2- fold to about 3-fold as compared to an AAV virion comprising the corresponding parental AAV capsid protein.
[0120] In some embodiments, an amino acidmodification of a capsid protein described herein can confer an increase in an ability to cross an internal limiting membrane (ILM) in an eye of a subject compared to the ability of an AAV virion comprising the corresponding parental or unmodified AAV capsid protein to cross the ILM in the eye of the subject.
[0121] In someembodiments, the increase in theability to cross the ILM isan increaseofat least about5%,at least about 10%, at least about 20%, at least about 30%, at least about 40%, at least about 50%, at least about 60%, at least about 70%, at least about 80%, at least about 90%, or at least about 100% as compared to an AAV virion comprising the corresponding parental AAV capsid protein. In some embodiments, the increase in the ability to cross the ILM is an increaseof betweenabout 5% toabout 100%,betweenabout 5% toabout 95%,betweenabout 5% toabout 90%,between about 5% to about 85%, between about 5% to about 80%, between about 5% to about 75%, between about 5% to about 70%, between about 5% to about 65%, between about 5% to about 60%, between about 5% to about 55%, between about 5% to about 50%, between about 5% to about 45%, between about 5% to about 40%, between about 5% to about 35%, betweenabout 5% toabout 30%, betweenabout 5% toabout 25%, betweenabout 5% toabout 20%, betweenabout 5% to about 15%, or between about 5% to about 10%as compared to anAAV virion comprising the corresponding parental AAV capsid protein.
[0122] In someembodiments, the increase in theability to cross the ILM is at least about 1-fold, at least about 1.1-fold, at 17 EP 4 674 483 A2 5 10 15 20 25 30 35 40 45 50 55 least about 1.2-fold, at least about 1.3-fold, at least about 1.4-fold, at least about 1.5-fold, at least about 1.6-fold, at least about 1.7-fold, at least about 1.8-fold, at least about 1.9-fold, or at least about 2-fold compared to anAAVvirion comprising the correspondingparental AAVcapsidprotein. In someembodiments, the increase in theability to cross the ILM isat least about 2-fold, at least about 3-fold, at least about 4-fold, at least about 5-fold, at least about 6-fold, at least about 7-fold, at least about 8-fold, at least about 9-fold, or at least about 10-fold as compared to an AAV virion comprising the corresponding parental AAV capsid protein. In some embodiments, the increase in the ability to cross the ILM is at least about 15-fold, at least about 20-fold, at least about 25-fold, at least about 30-fold, at least about 35-fold, at least about 40- fold, at least about 45-fold, at least about 50-fold, at least about55-fold, at least about60-fold, at least about65-fold, at least about 70-fold, at least about 75-fold, at least about 80-fold, at least about 85-fold, at least about 90-fold, or at least about 100-fold compared to an AAV virion comprising the corresponding parental AAV capsid protein.
[0123] In some embodiments, the increase in the ability to cross the ILM is between about 10-fold to about 100-fold, between about 10-fold to about 95-fold, between about 10-fold to about 90-fold, between about 10-fold to about 85-fold, between about 10-fold to about 80-fold, between about 10-fold to about 75-fold, between about 10-fold to about 70-fold, between about 10-fold to about 65-fold, between about 10-fold to about 60-fold, between about 10-fold to about 55-fold, between about 10-fold to about 50-fold, between about 10-fold to about 45-fold, between about 10-fold to about 40-fold, between about 10-fold to about 35-fold, between about 10-fold to about 30-fold, between about 10-fold to about 25-fold, betweenabout10-fold toabout20-fold, or betweenabout10-fold toabout15-foldascompared toanAAVvirion comprising the corresponding parental AAV capsid protein.
[0124] In some embodiments, the increase in the ability to cross the ILM is between about 2-fold to about 20-fold, between about 2-fold to about 19-fold, between about 2-fold to about 18-fold, between about 2-fold to about 17-fold, between about 2-fold to about 16-fold, between about 2-fold to about 15-fold, between about 2-fold to about 14-fold, between about 2-fold to about 13-fold, between about 2-fold to about 12-fold, between about 2-fold to about 11-fold, betweenabout 2-fold to about 10-fold, betweenabout 2-fold to about 9-fold, betweenabout 2-fold to about 8-fold, between about 2-fold to about 7-fold, between about 2-fold to about 6-fold, between about 2-fold to about 5-fold, between about 2- fold to about 4-fold, or between about 2-fold to about 3-fold as compared to an AAV virion comprising the corresponding parental AAV capsid protein.
[0125] One advantage of gene therapy is that it requires less frequent administration of a therapeutic agent such as an anti-VEGF agent as disclosed herein, and provides for a prolonged or continued release of the therapeutic agent as compared to conventional methods that administer proteins. Gene therapy that utilizes vectors, e.g., AAV2.7m8, that target a specific tissue or cell type of interest can also minimize off-target effects, or provide a more targeted delivery of a therapeutic agent such as an anti-VEGF agent. With prolonged or sustained delivery of anti-VEGF agent in vivo via gene therapy, onewould be able to administer the pharmaceutical composition notmore than once in at least 2, 3, 4, 5, 6, 7, 8, 9, 10 or more years. Therapeutic Agents
[0126] In some embodiments, a gene therapy is used to deliver a therapeutic transgene having an anti-VEGF activity that is suitable for or adapted for administration to an eye or vitreous of an eye of a non-humanprimate or a human subject. In some embodiments, rAAV comprising a capsid variant (e.g., AAV2.7m8) described herein comprises a heterologous nucleic acid sequence that encodes an anti-VEGFagent is used to deliver the sequence of the anti-VEGFgene into retinal cells upon intravitreal or subretinal injection to a subject. In some embodiments, the rAAV comprising the anti-VEGF gene is formulated for gene therapy and intravitreal injection. In some embodiments, the anti-VEGF gene refers to a functional fragment or a variant thereof. In some embodiments, the nucleic acid sequence of anti-VEGF agents, such as sFLT‑1, ranibizumab, or bevacizumab, is derived from its amino acid sequence, which is readily available. In some embodiments, the nucleic acid sequenceof anti-VEGFagents, suchas sFLT‑1, ranibizumab, or bevacizumab, is further codonoptimized to improve its expression inasubject. In someembodiments, thenucleicacid sequenceand / or theaminoacidsequenceof an anti-VEGF agent is modified to enhance its activity, expression, stability, and / or solubility in vivo.
[0127] Codon optimization can be achievedwith anymethod known in the art. Codon optimization refers to a process of modifying a nucleic acid sequence for enhanced expression of a gene in target or host cells of interest, e.g., human retinal cells, by replacing at least one codon (e.g., about or more than 1, 2, 3, 4, 5, 10, 15, 20, 25, 50, 100 or more codons) of a native sequence with codons that are used more frequently or are most frequently used in the host cell while maintaining the native amino acid sequence. Codon usage tables are readily available, including for examples, GenScript Codon Usage Frequence Table Tool at http: / / www.genscript.com / tools / codon-frequency-table; CodonUsageDatabase at http: / / www.kazusa.or.jp / codon / ; and Nakamura, Y., et al. "Codon usage tabulated from the international DNA sequence databases: status for the year 2000" Nucl. Acids Res. 28:292 (2000).
[0128] In some embodiments, the amino acid sequence of an anti-VEGF agent encoded in a gene therapy is at least 75%, 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, 99.9%, 99.99%or 100%homologous to amino acid sequence of any one of the following anti-VEGF agents: sFLT‑1, ranibizumab, or bevacizumab. In some embodi- 18 EP 4 674 483 A2 5 10 15 20 25 30 35 40 45 50 55 ments, thenucleicacid sequenceused inagene therapyor rAAVdisclosedherein is compared to thecorrespondingcDNA sequence of the amino acid sequence of any one of sFLT‑1, ranibizumab, or bevacizumab, and shows at least 75%, 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, 99.9%, 99.99%or 100%sequence homology between the nucleic acid sequencesof anyoneof sFLT‑1, ranibizumab,or bevacizumab. In somecases, ananti-VEGFexpressed from the gene therapy is at least 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, 99.9%, 99.99% or 100% spatially homologous to any one of sFLT‑1, ranibizumab, or bevacizumab (e.g., in terms of its secondary, tertiary, and quaternary structure or conformation). In some cases, anti-VEGFagent of the pharmaceutical compositions andmethods disclosed herein is at most 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, 99.9%, 99.99% or 100% spatially homologous to any one of sFLT‑1, ranibizumab, or bevacizumab used in the standard of care (e.g., secondary, tertiary, and quaternary structure or conformation).
[0129] In some instances, anti-VEGF agent as included in a gene therapy based on a rAAV comprises a capsid variant as disclosed herein (e.g., the 7m8 variant), encodes a protein, fusion protein, or polypeptide that has at least 75%, at least 80%, at least 81%, at least 82%, at least 83%, at least 84%, at least 85%, at least 86%, at least 87%, at least 88%, at least 89%, at least 90%, at least 91%, at least 92%, at least 93%, at least 94%, at least 95%, at least 96%, at least 97%, at least 98%,at least 99%,orat least 100%homology to thecorrespondingcDNAsequencesof theanti-VEGFagent (e.g., sFLT‑1, ranibizumab, or bevacizumab). In some embodiments, methods and pharmaceutical compositions disclosed herein comprise sFLT‑1, ranibizumab, or bevacizumab, or a functional fragment or variant or mutant thereof. In some embodi- ments, the nucleic acid sequence of any of sFLT‑1, ranibizumab, or bevacizumab is modified or codon-optimized to enhance its activity, expression, and / or solubility in vivo.
[0130] In some embodiments, AAV2.7m8 is used as a gene therapy or a delivery system for any one of sFLT‑1, ranibizumab, or bevacizumab. AAV2.7m8-sVEGFR‑1 refers to rAAV2 comprising the 7m8 insertion between positions 587 and 588 of capsid protein VP1 of AAV2 and a nucleic acid sequence encoding sVEGFR‑1. AAV2.7m8‑ ranibizumab refers to rAAV2 comprising the 7m8 insertion between positions 587 and 588 of capsid protein VP1 of AAV2 and a nucleic acid sequence encoding ranibizumab.
[0131] The present disclosure contemplates methods and pharmaceutical compositions as disclosed herein compris- ing one or more therapeutic agents. In some embodiments, the therapeutic agent is an anti-VEGF agent. In some embodiments, the anti-VEGF agent is expressed from a rAAV vector or gene therapy, or is delivered into a target cell, tissue, or a subject in vivo.Gene therapyhas theadvantageof providing the therapeutic agent, e.g., anti-VEGFagent, for a prolonged period of time in vivo, which decreases the need for repeated injections as compared to administration of a protein-based therapy. Such advantage of gene therapy can lead to amore sustained delivery of the therapeutic agent in vivo, which provides an improvement over the current standard of care. Additionally, a gene therapy can also provide a more targeted delivery of the therapeutic agent in vivo, e.g., to target cells, and minimize off-target effects.
[0132] In someembodiments, a geneproduct disclosed herein canbeapolypeptide thatwhenexpressed can result in a reduction in neovascularization in an eye of a subject. In some cases, the expressed polypeptide can be an anti-vascular endothelial growth factor (VEGF) protein or peptide, or an angiogenesis inhibitor.
[0133] In someembodiments, a gene product disclosed herein can be an anti-VEGFantibody or a fragment thereof that can target or at least partially inhibit VEGF. In some instances, the antibody canbea full length antibody, comprising both a variable region and Fc region. In some instances, the antibody can be a single chain fv fragment. In some instances, the antibody can have a defined binding affinity to a VEGF epitope. In some instances, the antibody can have a Kd of at least about 1mM,at least about 100µM,at least about10µM,at least about1µM,at least about100nM,at least about 10nM,at least about 1 nM, at least about 100 pM, at least about 10 pM, or at least about 1 pM. In some instances, an anti-VEGF agent binds to an endogenousVEGForVEGFRstronger than the corresponding endogenousVEGFRorVEGF.Stronger binding of the anti-VEGF agent allows the anti-VEGF agent to sequester endogenous VEGF or to block endogenous proteins from interacting with an endogenous VEGFR.
[0134] In someembodiments, theanti-VEGFantibodycanbeahumanizedmonoclonal antibody. In some instances, the humanized monoclonal antibody can be rhuMab. In some embodiments, the anti-VEGF antibody can be ranibizumab, a monoclonal antibody fragment, or a variant or fragment thereof. In some embodiments, the anti-VEGF antibody can be bevacizumab,a recombinanthumanizedmonoclonal antibody,oravariant or fragment thereof. In someembodiments, the anti-VEGF agent is PAN‑90806, or a variant or fragment thereof. In some embodiments, the therapeutic agent is a nucleic acid sequence that encodes one or more polypeptides comprising an anti-VEGF agent as disclosed herein, e.g., an antibody, antibody fragment, monoclonal antibody, a humanized monoclonal antibody, fusion protein, aptamer, etc. In some embodiments, the anti-VEGF agent is a soluble receptor decoy that binds to VEGF, or a soluble form of one more VEGF receptors that can sequester VEGF in vivo.
[0135] In some embodiments, a therapeutic agent disclosed herein can be a nucleic acid such as an aptamer, an interfering RNA, an mRNA, and the like. In some cases, the aptamer can be pegaptanib. In some embodiments, the therapeutic agent can bea steroid or a smallmolecule. In some instances, the steroid can bea corticosteroid. Examples of corticosteroids can include triamcinolone, dexamethasone, fluocinolone acetonide, cortisone, prednisolone, flumetho- lone, and derivatives thereof. In some instances, the steroid can be an anti-inflammatory steroid. 19 EP 4 674 483 A2 5 10 15 20 25 30 35 40 45 50 55
[0136] The recombinant virus, gene therapy, pharmaceutical compositions, andmethods of the present disclosure can comprise the sequence encoding an anti-VEGF protein, including, but not limited to, the VEGF-binding proteins or functional fragments thereof as disclosed in U.S. Pat. Nos. 5,712,380, 5,861,484 and 7,071,159, and also as described in U.S. Pub. No. 2014 / 0371438. In some embodiments, an anti-VEGF protein includes the sFLT‑1 protein, ranibizumab, or bevacizumab as described herein.
[0137] In some embodiments, the gene therapy, pharmaceutical compositions, and methods of the present disclosure can comprise the sequence encoding an anti-VEGF protein, e.g., sFlt‑1. In some embodiments, an anti-VEGF agent includes, but is not limited to, functional fragments of sFlt‑1, including sequences of sFlt‑1 domain 2 or the sequence. An anti-VEGF agent can include sequences or polypeptides expressed from DNA encoding such sequences using the genetic code, a standard technique that is understood by those skilled in the art.
[0138] As used herein, "sFlt‑1 protein" or "sFlt" or "sVEGFR‑1" are used interchangeably to refer to a polypeptide sequence, or a functional fragment or variant thereof, with at least 75%, at least 80%, at least 81%, at least 82%, at least 83%, at least 84%, at least 85%, at least 86%, at least 87%, at least 88%, at least 89%, at least 90%, at least 91%, at least 92%, at least 93%, at least 94%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99%, or at least 100% homology to the human sFLT‑1 sequence, such that the sFlt‑1 protein or polypeptide binds to VEGF and / or the VEGF receptor in vivo. FIG. 2 illustrates a nucleic acid sequence of sFlt‑1. Homology refers to the% conservation of residues of an alignment between two sequences (e.g. naturally occurring human sFLT‑1 proteinmay include any suitable variants of sFLT‑1, including, but not limited to functional fragments, sequences comprising insertions, deletions, substitutions, pseudofragments, pseudogenes, splice variants or artificially optimized sequences. In some cases, "sFLT‑1 protein" is at least about 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% homologous to the naturally occurring human sFLT‑1 protein sequence. In some embodiments, "sFLT‑1 protein" is at most about 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% homologous to the naturally occurring human sFLT‑1 protein sequence. In some cases, "sFLT‑1 protein" is at least about 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% spatially homologous to the naturally occurring human sFLT‑1 protein conformation. In some cases, "sFLT‑1 protein" is at most about 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% spatially homologous to the naturally occurring human sFLT‑1 protein conformation.
[0139] In some cases, the soluble truncated form of the VEGF receptor FLT‑1, sFLT‑1, is the only known endogenous inhibitor of VEGF. sFLT‑1 can be generated by alternative RNA splicing and lacks the membrane-proximal immunoglo- bulin-like domain, the transmembrane spanning region and the intracellular tyrosine-kinase domain.
[0140] In some cases, administration of a gene therapy or pharmaceutical composition as disclosed herein comprising sFLT‑1 can inhibit or reduce VEGF or its activity in vivo by binding or sequestering endogenous VEGF, or by forming inactive heterodimerswithmembranespanning isoformsof theVEGF receptorsFLTt‑1andFLK‑1 / KDR.Theseproperties of sFLT‑1havebeendescribed inKendall andThomas, 1993;ProcNatl Acad.Sci. 90: 10705‑10709,which is incorporated herein by reference in its entirety. In some embodiments, functional fragments of sFLT‑1 can be used instead of the full- length protein. In some embodiments, the VEGF binding domain (domain 2), or alternatively KDR, or another family member, can be used to bind and inactivate VEGF.
[0141] In some embodiments, the methods and pharmaceutical compositions of the present disclosure comprise an anti-VEGF agent that is bevacizumab or ranibizumab, a functional fragment or variant thereof. Catt Research, Group; Martin, DF; Maguire, MG; Ying, GS; Grunwald, JE; Fine, SL; Jaffe, GJ (2011). "Ranibizumab and Bevacizumab for Neovascular Age-Related Macular Degeneration". New England Journal of Medicine. 364 (20): 1897‑1908.
[0142] Ranibizumab light chain and heavy chain amino acid sequences are publicly available at DrugBank database, accession number DB01270: >Ranibizumab Light Chain >Ranibizumab Heavy Chain 20 EP 4 674 483 A2 5 10 15 20 25 30 35 40 45 50 55
[0143] Bevacizumab light chain and heavy chain amino acid sequences are publicly available at DrugBank database, access number DB00112 (BTD00087, BIOD00087): >Bevacizumab Light Chain >Bevacizumab Heavy Chain
[0144] Bevacizumab is a recombinant humanized monoclonal IgG1 antibody that binds to all VEGF-A isoforms and blocks angiogenesis by inhibitingVEGF-A. Los,M.; Roodhart, J.M. L.; Voest, E. E. (2007). "Target Practice: Lessons from Phase III TrialswithBevacizumabandVatalanib in theTreatment ofAdvancedColorectal Cancer". TheOncologist. 12 (4): 443‑50; Shih, T; Lindley, C (November 2006). "Bevacizumab: an angiogenesis inhibitor for the treatment of solid malignancies." Clinical therapeutics. 28 (11): 1779‑802.
[0145] Ranibizumab is a recombinant humanized IgG1 kappa isotype monoclonal antibody fragment and binds to all VEGF-A isoforms with a higher affinity than bevacizumab. Ranibizumab lacks an Fc region. In some embodiments, an anti-VEGF agent is bevacizumab or ranibizumab, or a functional fragment or variant thereof. In some embodiments, an anti-VEGF agent is at least about 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, 99.9%, 99.99% or 100% homologous to bevacizumab or ranibizumab in amino acid and / or nucleic acid (e.g., cDNA) sequence. In some embodiments, an anti-VEGF agent is at most about 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, 99.9%, 99.99% or 100% homologous to bevacizumab or ranibizumab in amino acid and / or nucleic acid (e.g., cDNA) sequences known in the field. In some cases, an anti-VEGFagent is at least about 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, 99.9%, 99.99% or 100% spatially homologous to bevacizumab or ranibizumab protein conformation, including secondary, tertiary, or quaternary structures.
[0146] Given an amino acid sequence, one can readily generate the corresponding cDNA or nucleic acid sequence to use in agene therapy disclosedherein.Methods for reverse translatinganaminoacid sequence includeEMBOSSProtein Sequence Back-translation tool available at http: / / www.ebi.ac.uk / Tools / st / . In some embodiments, a nucleic acid se- quence of an anti-VEGF agent is codon-optimized using any of the techniques known it the art, for example, GenScript Codon Usage Frequence Table Tool at http: / / www.genscript.com / tools / codon-frequency-table; Codon Usage Database at http: / / www.kazusa.or.jp / codon / ; andNakamura, Y., et al. "Codon usage tabulated from the international DNAsequence databases: status for the year 2000" Nucl. Acids Res. 28:292 (2000). 21 EP 4 674 483 A2 5 10 15 20 25 30 35 40 45 50 55 Pharmaceutical Compositions
[0147] In someembodiments, a pharmaceutical composition is a formulation containing oneormore active ingredients, e.g.,AAV2.7m8comprisinganucleicacid sequence that encodes theananti-VEGFagent, or a fragmentor variant thereof, as well as one or more excipients, carriers, stabilizers, or bulking agents, which are suitable for administration to a human patient via intravitreal or subretinal injection to achieve a desired therapeutic or prophylactic effect.
[0148] In some embodiments, the pharmaceutical compositions comprising rAAV, or AAV2.7m8 and a nucleic acid sequence that encodes an anti-VEGF agent, are supplied as a reconstituted solution or suspension. In other embodi- ments, the pharmaceutical compositions comprising rAAV, or AAV2.7m8 and a nucleic acid sequence that encodes an anti-VEGF agent, are supplied in a lyophilized form, and is reconstituted before administration to a patient. In some embodiments, method of treatment or prevention of an eye disease or condition as disclosed herein comprises first reconstituting, dissolving, or solubilizinga lyophilizedpharmaceutical composition comprising rAAV (e.g., AAV2.7m8)and a nucleic acid sequence that encodes an anti-VEGF agent in a buffer. In some embodiments, such lyophilized pharmaceutical composition comprising rAAV (e.g., AAV2.7m8) and a nucleic acid sequence that encodes an anti-VEGF agent as disclosed herein, can further comprise a cryoprotectant, surfactant, salt, a stabilizer, or any combination thereof.
[0149] In some embodiments, the pharmaceutical compositions comprising rAAV, or AAV2.7m8 and a nucleic acid sequence that encodes an anti-VEGF agent is supplied as a suspension. In some embodiments, the suspension is refrigerated. In some embodiments, the suspension is a solution. In some embodiments, a homogenous solution containing the pharmaceutical composition is supplied as a pre-filled syringe. In some embodiments, pharmaceutical compositions disclosed herein are supplied as a suspension. In some embodiments, the suspension is refrigerated. In some embodiments, method of treatment or prevention of an eye disease or condition as disclosed herein comprises warming the refrigerated suspension to room temperature and / or agitating the suspension to ensure even distribution before administering or intravitreal injection to a patient. In some embodiments, the suspension is diluted before administering to a patient. In some embodiments, such pharmaceutical composition comprises a surfactant, salt, a stabilizer, or any combination thereof. In some embodiments, a suspension containing the pharmaceutical composition is supplied as a pre-filled syringe.
[0150] In some embodiments, the gene therapy or pharmaceutical compositions described herein is provided as a suspension or as a refrigerated suspension. In some embodiments, the suspension comprises a pharmaceutically acceptable excipient, e.g., surfactant, glycerol, non-ionic surfactant, buffer, glycol, salt, and any combination thereof. In some embodiments, hydrochloric acid and sodium hydroxide are used to adjust the pH of the solution. In some embodiments, the refrigerated suspension is at a neutral pH, or at a pH between 6.5 to 7.5. In some embodiments, the pH of the refrigerated suspension is slightly basic (e.g., pH about 7.5, 8, 8.2, 8.4, 8.5, or 9). In some embodiments, the pH of the refrigerated suspension or solution is slightly acidic (e.g., pH about 6.5, 6.3, 6.1, 6, 5.5, or 5). In some embodiments, the refrigerated suspension is a solution. In some embodiments, the refrigerated suspension comprises micelles. In some embodiments, refrigerated suspension is agitated before administration.
[0151] In some embodiments, a gene therapy comprising rAAV (e.g., AAV2.7m8) and an anti-VEGF agent as disclosed herein is supplied as a kit, comprising lyophilized or freeze-dried pharmaceutical composition disclosed herein and a buffered solution for dissolving, diluting or reconstituting the lyophilized pharmaceutical composition. In some embodi- ments, a kit comprises freeze-dried or lyophilized pharmaceutical composition comprising rAAV (e.g., AAV2.7m8) and a solution for reconstituting the pharmaceutical composition to a desired concentration or volume. In some embodiments, the kit includes a buffer that helps to prevent aggregation upon reconstituting the pharmaceutical composition disclosed herein. In some embodiments, the gene therapy comprising the anti-VEGF agent is provided as a suspension. In some embodiments, the pharmaceutical composition is provided in a pre-filled syringe. In someembodiments, a kit comprises a dual-chamber syringe wherein one of the chambers contains a buffer for dissolving or diluting the pharmaceutical composition.
[0152] In someembodiments, the kit comprises a syringe for injection. In someembodiments, the reconstituted solution is filtered before administration. In some embodiments, the kit comprises a filter or a filter syringe for filtering the pharmaceutical composition in the kit before administration to a patient.
[0153] In some embodiments, for storage stability and convenience of handling, a pharmaceutical composition, comprising rAAV (e.g., AAV2.7m8) and a nucleic acid sequence that encodes an anti-VEGF agent as disclosed herein, canbe formulatedasa lyophilized (i.e. freezedried) or vacuumdriedpowder that canbe reconstitutedwith saline,buffer, or water prior to administration to a subject. Alternately, the pharmaceutical composition can be formulated as an aqueous solution or suspension. A pharmaceutical composition can contain rAAV virions or particles comprising a nucleic acid sequence that encodes an anti-VEGF agent as disclosed herein. In some embodiments, a different virus or delivery system, e.g., nanoparticles or lipidbased complexes, can be used to deliver the nucleic acid sequence that encodes an anti-VEGF agent as disclosed herein. Various excipients, such as phosphate, PBS, or Tris buffer, glycol, glycerol, saline, surfactant (e.g., pluronic or polysorbate), or any combination thereof, can be used to stabilize a pharmaceutical composition. Additionally, cryoprotectants, such as alcohols, DMSO, glycerol, and PEG can be used as a stabilizer 22 EP 4 674 483 A2 5 10 15 20 25 30 35 40 45 50 55 under the freezing or drying conditions of lyophilization, or be used as a stabilizer for making a refrigerated suspension.
[0154] In some embodiments, the lyophilized or a suspension of the pharmaceutical composition comprising an anti- VEGF gene therapy as disclosed herein has a volume (or reconstituted volume) of about 10, 20, 30, 40, 50, 60, 70, 80, 90, 100, 200, 300, 400, 500, 600, 700, 800, 900, or 1000µL. In some embodiments, the lyophilized or suspension form of the pharmaceutical composition comprising the an anti-VEGFgene therapy as disclosed herein has a volume of between 0.1 to 0.5mL, between0.1 to 0.2mL, between 0.3 to 0.5mL, between0.5‑1.0mL, between0.5‑0.7mL, between 0.6 to 0.8mL, between 0.8 to 1 mL, between 0.9 to 1.1 mL, between 1.0 to 1.2, or between 1.0 to 1.5 mLmL. In other embodiments, the reconstituted volume is no more than about 0.1, 0.2, 0.3, 0.4, 0.5, 0.6, 0.7, 0.8, 0.9, 1.0, 1.1, 1.2, 1.3, 1.4, or 1.5 mL.
[0155] In some embodiments, pharmaceutical compositions disclosed herein are designed, engineered, or adapted for administration to a primate (e.g., non-human primate and human subjects) via intravitreal or subretinal injection. In some embodiments, a pharmaceutical composition comprising rAAV virions comprising a nucleic acid sequence that encodes an anti-VEGF agent is formulated for intravitreal injection into an eye of a subject. In some embodiments, the pharma- ceutical composition is formulated to a concentration that allows intravitreal injection of a volume not more than about 2, 2.5, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95, 100, 110, 120, 130, 140, 150, 160, 170, 180, 190, or 200 µL. In some embodiments, methods of treatment disclosed herein comprises intravitreal injection of a volume of about2, 5, 10, 15, 20,25, 30, 35, 40,45, 50, 55,60, 65, 70, 75,80, 85, 90, 95,100, 110, 120, 130, 140, 150µLofa solutionor suspension comprisinga rAAV (e.g., AAV2.7m8) comprisinganucleic acid sequence that encodesananti-VEGFagent as disclosed herein.
[0156] In some instances, aAAV2.7m8virioncomprisinganucleic acid sequenceof theanti-VEGF transgenedescribed herein can be a component of a gene therapy pharmaceutical composition. In some embodiments, a rAAV virion of any serotype comprising the7m8variant capsidprotein asdescribedherein canbeused tomakea lyophilizedpharmaceutical composition or a suspension of the pharmaceutical composition. In someembodiments, the rAAVvirion is rAAV2. In some embodiments, the lyophilized form or a suspension form of the pharmaceutical composition comprises rAAV2 having a 7m8 variant capsid protein and a DNA sequence that encodes an anti-VEGF agent as disclosed herein.
[0157] In some embodiments, a pharmaceutical composition disclosed herein is adapted for gene therapy or for intravitreal delivery of an anti-VEGF agent as the therapeutic agent in human patients or non-human primates. In some embodiments, aunit doseof thepharmaceutical compositioncomprisesbetween1×1010 to1×1013 viral genomes (vg). In some embodiments, a unit dose comprises about 2.1×1011, about 2.1×1012, or about 2.1×1013 vector genome. In some embodiments, the unit dose of the pharmaceutical composition of the disclosure is 1×1010 to 3×1012 vector genomes. In some cases, the unit dose of the pharmaceutical composition of the disclosure is 1×109 to 3×1013 vector genomes. In some cases, the unit dose of the pharmaceutical composition of the disclosure is 1×1010 to 1×1011 vector genomes. In some cases, the unit dose of the pharmaceutical composition of the disclosure is 1×108 to 3×1014 vector genomes. In some cases, the unit dose of the pharmaceutical composition of the disclosure is at least 1×101, 1×102, 1×103, 1×104, 1×105, 1×106, 1×107, 1×108, 1×109, 1×1010, 1×1011, 1×1012, 1×1013 1×1014, 1×1015, 1×1016, 1×1017, or 1×1018 vector genomes. In some cases, the unit dose of the pharmaceutical composition of the disclosure is 1×1010 to 5×1013 vector genomes. In somecases, theunit dose of the pharmaceutical composition of thedisclosure is atmost about 1×108, 1×109, 1×1010, 1×1011, 1×1012, 1×1013, 1×1014, 1×1015, 1×1016, 1×1017, and 1×1018 vector genomes.
[0158] In some cases, a unit dose of the pharmaceutical composition of the disclosure can bemeasured as pfu (plaque forming units). In some cases, the pfu of the unit dose of the pharmaceutical composition of the disclosure can be about 1×108 toabout1×1012pfu. In somecases, thepfuof theunit doseof thepharmaceutical compositionof thedisclosurecan be at least about 1×108, 2×108, 3×108, 4×108, 5×108 , 6×108, 7×108, 8×108, 9×108, 1×109, 2×109, 3×109, 4×109, 5×109, 6×109, 7×109, 8×109, 9×109, 1×1010, 2×1010, 3×1010, 4×1010, 5×1010, 6×1010, 7×1010, 8×1010, 9×1010, 1×1011, 2×1011, 3×1011, 4×1011, 5×1011, 6×1011, 7×1011, 8×1011, 9×1011 or 1×1012 pfu. In somecases, the pfu of the unit doseof thepharmaceutical composition of the disclosure canbeatmost about 1×108, 2×108, 3×108, 4×108, 5×108, 6×108, 7×108, 8×108, 9×108, 1×109, 2×109, 3×109, 4×109, 5×109, 6×109, 7×109, 8×109, 9×109, 1×1010, 2×1010, 3×1010, 4×1010, 5×1010, 6×1010, 7×1010, 8×1010, 9×1010, 1×1011, 2×1011, 3×1011, 4×1011, 5×1011, 6×1011, 7×1011, 8×1011, 9×1011 or 1×1012 pfu.
[0159] In some cases, the viral vector of the disclosure may be measured as vector genomes (vg). In some cases, the unit dose of the pharmaceutical composition of the disclosure can be 1×1010 to 1×1013 vector genomes. In some cases, the unit dose of the pharmaceutical composition of the disclosure can be 1×109 to 1×1014 vector genomes. In some cases, the unit dose of the pharmaceutical composition of the disclosure can be 1×1010 to 1×1011 vector genomes. In some cases, the unit dose of the pharmaceutical composition of the disclosure can be 1×108 to 1×1015 vector genomes. In somecases, theunit doseof thepharmaceutical composition of thedisclosure is at least 1×101, 1×102, 1×103, 1×104 , 1×105, 1×106 , 1×107, 1×108, 1×109 , 1×1010, 1×1011, 1×1012, 1×1013, 1×1014, 1×1015, 1×1016, 1×1017 and 1×1018 vector genomes. In some cases, the unit dose of the pharmaceutical composition of the disclosure is 1×108 to 1×1015 vector genomes. In somecases, theunit doseof thepharmaceutical compositionof thedisclosure is atmost about 1×101, 1×102, 1×103, 1×104 , 1×105, 1×106 , 1×107, 1×108 , 1×109 , 1×1010, 1×1011, 1×1012, 1×1013, 1×1014, 1×1015, 1×1016, 1×1017 and 1×1018 vector genomes. In some embodiments, the unit dose is between 1010 to 1011, 23 EP 4 674 483 A2 5 10 15 20 25 30 35 40 45 50 55 between 1011 to 1012, between 1010 to 1012, between 1012 to 1013, between 1011 to 1013, between 1012 to 1013, between 1012 to 1014, between 1011 to 1014, between 1011 to 1015, between 1012 to 1015, between 1013 to 1014, between 1014 to 1015, between 1015 to 1016, between 1016 to 1017, between 1017 to 1018, between 1018 to 1019, or between 1019 to 1020 vector genomes.
[0160] In some embodiments, the unit dose of the pharmaceutical composition of the disclosure is between 1×1010 to 2×1010, between 2×1010 to 3×1010, between 3×1010 to 4×1010, between 4×1010 to 5×1010, between 5×1010 to 6×1010, between 6×1010 to 7×1010, between 7×1010 to 8×1010, between 8×1010 to 9×1010, between 9×1010 to 10×1010, between 1×1011 to 2×1011, between 2×1011 to 3×1011, between 2×1011 to 2.5×1011, between 2.5×1011 to 3×1011, between3×1011 to4×1011, between4×1011 to5×1011, between5×1011 to6×1011, between6×1011 to7×1011, between 7×1011 to 8×1011, between 8×1011 to 9×1011, between 9×1011 to 10×1011, between 1×1012 to 2×1012, between 2×1012 to 3×1012, between 2.5×1012 to 3×1012, between 3×1012 to 4×1012, between 4×1012 to 5×1012, between 5×1012 to 6×1012, between 6×1012 to 7×1012, between 7×1012 to 8×1012, between 8×1012 to 9×1012, between 9×1012 to 10×1012, between 1×1013 to 2×1013, between 2×1013 to 3×1013, between 3×1013 to 4×1013, between 4×1013 to 5×1013, between 5×1013 to 6×1013, between 6×1013 to 7×1013, between 7×1013 to 8×1013, between 8×1013 to 9×1013, or between 9×1013 to 10×1013 vector genomes.
[0161] In some embodiments, the unit dose of rAAVof this disclosure is between 2×1011 to 8×1011 or between 2×1012 to 8×1012 vector genomes. In some embodiments, the unit dose of rAAV of this disclosure is between 1010 to 1013, between 1010 to 1011, between 1011 to 1012, between 1012 to 1013, or between 1013 to 1014 vector genomes.
[0162] In someembodiments, the unit dose of rAAVof this disclosure is between1×1010 to 2×1010, between 2×1010 to 4×1010, between 3×1010 to 5×1010, between 4×1010 to 6×1010, between 5×1010 to 7×1010, between 6×1010 to 8×1010, between 7×1010 to 9×1010, between 8×1010 to 1011, between 1×1011 to 2×1011, between 2×1011 to 4×1011, between 3×1011 to 5×1011, between 4×1011 to 6×1011, between 5×1011 to 7×1011, between 6×1011 to 8×1011, between 7×1011 to 9×1011, between 8×1011 to 10×1011, between 1×1012 to 3×1012, between 2×1012 to 4×1012, between 3×1012 to 5×1012, between 4×1012 to 6×1012, between 5×1012 to 7×1012, between 6×1012 to 8×1012, between 7×1012 to 9×1012, between 8×1012 to 10×1012, between 1×1013 to 5×1013, between 5×1013 to 10×1013, between 1012 to 5×1012, between 5×1012 to 1×1013, between 7×1012 to 1×1013, between 8×1012 to 2×1013, between 9×1012 to 2×1013, between 9×1012 to 2×1013, between 9×1012 to 4×1013, between 1×1013 to 3×1011, between 1×1013 to 2×1013, between 2×1013 to 3×1013, between 3×1013 to 4×1013, between 4×1013 to 5×1013, between 5×1013 to 6×1013, between 6×1013 to 7×1013, between 7×1013 to 8×1013, between 8×1013 to 9×1013, or between 8×1013 to 1×1014 vector genomes.
[0163] In some embodiments, a lower amount or range of vector genomes is selected for a unit dose to avoid aggregation. In some embodiments, a higher amount or range of vector genomes is selected for a unit dose so that a smaller volume can be used for injection. Smaller volume (e.g., less than 50, 40, 30, 20, 10, or 5µL) of injection can help to reduce changes in ocular pressure and other adverse effects associatedwith intravitreal injection. In someembodiments, a higher concentration of rAAV also helps to ensure efficient delivery of the therapeutic transgene into target cells.
[0164] In some embodiments, a unit dose comprise between 2E12 to 6E12 vector genomes. In some embodiments, a unit dose comprises about 1E12, 1.5E12, 2E12, 2.5E12, 3E12, 3.5E12, 4E12, 4.5E12, 5E12, 5.5E12, 6E12, 6.5E12, 7E12, 7.5E12, 8E12, 8.5E12, 9E12, or 9.5E12 vector genomes. In some embodiments, a unit dose comprises between 1E12 to 1.5E12, between 1.5E12 to 2E12, between 2E12 to 2.5E12, between 2.5E12 to 3.0E12, between 3.0E12 to 3.5E12, between 3.5E12 to 4.0E12, between 4.0E12 to 4.5E12, between 4.5E12 to 5.0E12, between 5.0E12 to 5.5E12, between 5.5E12 to 6.0E12, between 6.0E12 to 6.5E12, between 6.5E12 to 7.0E12, between 7.0E12 to 7.5E12, between 7.5E12 to 8.0E12, between 8.0E12 to 8.5E12, between 8.5E12 to 9.0E12, between 9.0E12 to 9.5E12, or between 9.5E12 to 10E12 vector genomes. In some embodiments, a unit dose comprises at least 1E12, 1.5E12, 2E12, 2.5E12, 3E12, 3.5E12, 4E12, 4.5E12, 5E12, 5.5E12, 6E12, 6.5E12, 7E12, 7.5E12, 8E12, 8.5E12, 9E12, or 9.5E12 vector genomes. In some embodiments, a unit dose comprises no more than 1E12, 1.5E12, 2E12, 2.5E12, 3E12, 3.5E12, 4E12, 4.5E12, 5E12, 5.5E12, 6E12, 6.5E12, 7E12, 7.5E12, 8E12, 8.5E12, 9E12, or 9.5E12 vector genomes.
[0165] In some cases, the unit dose of the pharmaceutical composition of the disclosure can be measured using multiplicity of infection (MOI). In some cases,MOI can refer to the ratio, ormultiple of vector or viral genomes to the cells to which the nucleicmay be delivered. In some cases, theMOI canbe 1×106. In some cases, theMOI can be between about 1×105 to about 1×107. In some cases, the MOI may be 1×104‑1×108. In some cases, recombinant viruses of the disclosure can be at least about 1×101, 1×102, 1×103, 1×104, 1×105, 1×106, 1×107, 1×108, 1×109, 1×1010, 1×1011, 1×1012, 1×1013, 1×1014, 1×1015, 1×1016, 1×1017 and 1×1018 MOI. In some cases, recombinant viruses of this disclosure canbe fromabout 1×108 to about 1×1015MOI. In some cases, recombinant viruses of the disclosure canbe at most about 1×101, 1×102, 1×103, 1×104, 1×105, 1×106, 1×107, 1×108, 1×109, 1×1010, 1×1011, 1×1012, 1×1013, 1×1014, 1×1015, 1×1016, 1×1017 and 1×1018 MOI. In some embodiments, the MOI is between 1×1010 to 2×1010, between 2×1010 to 4×1010, between 3×1010 to 5×1010, between 4×1010 to 6×1010, between 5×1010 to 7×1010, between 6×1010 to 8×1010, between 7×1010 to 9×1010, between 8×1010 to 1011, between 1×1011 to 2×1011, between 2×1011 to 4×1011, between3×1011 to 5×1011, between4×1011 to 6×1011, between5×1011 to 7×1011, between6×1011 24 EP 4 674 483 A2 5 10 15 20 25 30 35 40 45 50 55 to 8×1011, between 7×1011 to 9×1011, between 8×1011 to 10×1011, between 1×1012 to 3×1012, between 2×1012 to 4×1012, between 3×1012 to 5×1012, between 4×1012 to 6×1012, between 5×1012 to 7×1012, between 6×1012 to 8×1012, between 7×1012 to 9×1012, between 8×1012 to 10×1012, between 1×1013 to 5×1013, between 5×1013 to 10×1013, between 1012 to 5×1012, between5×1012 to 1×1013, between7×1012 to 1×1013, between 8×1012 to 2×1013, between 9×1012 to 2×1013, between 9×1012 to 2×1013, between 9×1012 to 4×1013, between 1×1013 to 3×1013, between 1×1013 to 2×1013, between 2×1013 to 3×1013, between 3×1013 to 4×1013, between 4×1013 to 5×1013, between 5×1013 to 6×1013, between 6×1013 to 7×1013, between 7×1013 to 8×1013, between 8×1013 to 9×1013, or between 8×1013 to 1×1014.
[0166] Pharmaceutical compositions suitable for ocular use include sterile aqueous solutions or dispersions and sterile powders for the extemporaneous preparation of sterile injectable solutions, suspension, or dispersion. For intravitreal administration, suitable carriers include physiological saline, bacteriostatic water, phosphate buffered saline (PBS), and / or an isotonic agent, e.g., glycerol. In all cases, the pharmaceutical compositionmust be sterile and should be fluid to the extent that easy syringability or injectability exists. It must be stable under the conditions of manufacture and storage and must be preserved against the contaminating action of microorganisms such as bacteria and fungi. In some embodiments, the pharmaceutical composition can include an isotonic agent, such as a salt or glycerol. In some embodiments, a surfactant or a stabilizer is added to the pharmaceutical composition to prevent aggregation.
[0167] In some instances, the excipient can be a carrier. A carrier can be a solvent or dispersionmedium containing, for example, water, saline, ethanol, a polyol (for example, glycerol, propylene glycol, and liquid polyethylene glycol, and the like), and any combination thereof. The proper fluidity can be maintained, for example, by the use of a coating such as lecithin, by the maintenance of the required particle size in the case of dispersion and by the use of surfactants such as polysorbates (e.g., Tween™, polysorbate 20, polysorbate 80), sodium dodecyl sulfate (sodium lauryl sulfate), lauryl dimethyl amine oxide, cetyltrimethylammonium bromide (CTAB), polyethoxylated alcohols, polyoxyethylene sorbitan, octoxynol (TritonX100™), N,N-dimethyldodecylamine-N-oxide, hexadecyltrimethylammoniumbromide (HTAB), polyoxyl 10 lauryl ether, Brij 721™, bile salts (sodium deoxycholate, sodium cholate), pluronic acids (F‑68, F‑127), polyoxyl castor oil (Cremophor™) nonylphenol ethoxylate (Tergitol™), cyclodextrins and, ethylbenzethonium chloride (Hyamine™) Pre- vention of the action of microorganisms can be achieved by various antibacterial and antifungal agents, for example, parabens, chlorobutanol, phenol, cresol, ascorbic acid, thimerosal, and the like. In many cases, it will be preferable to include isotonic agents, for example, sugars, polyalcohols such asmannitol, sorbitol, sodium chloride in the composition. Prolonged absorption of the internal compositions can be brought about by including in the composition an agent which delays absorption, for example, aluminum monostearate and gelatin. In some embodiments, the pharmaceutical carrier includes sodium phosphate, sodium chloride, polysorbate, and sucrose. In some embodiments, a pharmaceutical composition comprises a surfactant, e.g., non-ionic surfactant such as polysorbate, poloxamer, or pluronic. In some embodiments, the addition of a non-ionic surfactant reduces aggregation in a suspension or solution.
[0168] In someembodiments, pharmaceutical compositionsuseful for the present disclosure canbepackaged in a kit to facilitate application of the present disclosure. In some aspects, the present method provides for a kit comprising a recombinant nucleic (e.g., rAAV comprising the nucleic acid sequence of an anti-VEGF agent) of the disclosure. In some aspects, the presentmethod provides for a kit comprising a lyophilized form of a recombinant virus of the disclosure and a solution for reconstituting the virus before administration to a patient. In some embodiments, the kit comprises a suspension form of the recombinant virus of the disclosure and a solution for diluting the suspension. In some embodiments, the suspension is supplied in as a pre-filled syringe. In some embodiments, the suspension or a kit thereof is refrigerated. In some embodiments, the suspension is warmed to room temperature before administration. In some embodiments, the suspension is agitated to ensure even distribution before administration.
[0169] In some embodiments, a kit comprises: a recombinant virus provided herein, and instructions to administer to an eye or retinal cells of a subject in a therapeutically effective amount of the recombinant virus. In some aspects, the kit comprises pharmaceutically acceptable salts or solutions for administering the recombinant virus. Optionally, the kit can further comprise instructions for suitableoperational parameters in the formofa label oraseparate insert. Forexample, the kit may have standard instructions informing a physician or laboratory technician to prepare a unit dose of recombinant virus from a solution or suspension and / or to reconstitute the lyophilized compositions. In some embodiments, optionally, the kit further comprises a device for administration, such as a syringe, filter needle, extension tubing, cannula, or subretinal injector.
[0170] In some embodiments, the pharmaceutical composition is provided as a refrigerated suspension. In some embodiments, the refrigerated suspension is provided in a kit, which can include a syringe and / or buffer for dilution. In some embodiments, the refrigerated suspension is provided as a pre-filled syringe.
[0171] In some embodiments, any suitable method can be used in the biochemical purification of recombinant viruses (e.g., rAAV) for use in a pharmaceutical composition as described herein. Recombinant AAV viruses can be harvested directly fromcells, or from the culturemedia comprising cells. Virus canbepurifiedusing various biochemicalmeans, such as gel filtration, filtration, chromatography, affinity purification, gradient ultracentrifugation, or size exclusion methods before lyophilizing or making a suspension of the rAAV viruses. 25 EP 4 674 483 A2 5 10 15 20 25 30 35 40 45 50 55 Indications
[0172] In some cases, rAAV virion of any serotype comprising a variant capsid protein and a therapeutic transgene, or a pharmaceutical composition thereof as described herein, can at least partially ameliorate an eye condition or disease associatedwith neovascularization of the eye, or associatedwith CNV. In some embodiments, a rAAV virion comprising a capsid variant protein is used to deliver an anti-VEGF transgene into an eye of a human subject.
[0173] Indications gene therapy or pharmaceutical compositions described herein include neovascular (wet) age- related macular degeneration (AMD), macular edema following retinal vein occlusion (RVO), diabetic macular edema (DME), retinal vein occlusion, and diabetic retinopathy (DR) in patients with DME. In some cases, methods and pharmaceutical compositions disclosed herein can be used to prevent or treat an eye condition or disease for which an anti-VEGF transgene is approved or indicated for. In someembodiments, a gene therapy (e.g., AAV2.7m8 based gene therapy) is used to treat or prevent aneye condition or disease that is responsive to at least one current standard of care for theeyecondition / disease, including, butnot limited to,CNV,wetAMD,dryAMD,macularedema followingRVO,DME,and diabetic retinopathy in patients with DME. In some embodiments, a rAAV gene therapy is used to treat or prevent any eye condition or disorder characterized by neovascularization or CNV. In another aspect, the present disclosure provides pharmaceutical compositions provided herein for the treatment of diseases such as, for example: AMD, DME, RVO, angiogenesis related diseases, cancer, autoimmune diseases, infectious disease organisms, and the like.
[0174] In some embodiments, the eye condition can be diabetic macular edema. Diabetic macular edema (DME) is a swelling of the retina in diabetes mellitus due to leaking of fluid from blood vessels within the macula. The macula is the central portion of the retina, a small area rich in cones, the specialized nerve endings that detect color and upon which daytime vision depends. As macular edema develops, blurring occurs in the middle or just to the side of the central visual field. Visual loss from diabetic macular edema can progress over a period of months and make it impossible to focus clearly. Common symptoms of DMEare blurry vision, floaters, double vision, and eventually blindness if it goes untreated. In some embodiments, methods and pharmaceutical compositions as disclosed herein are used to treat DME.
[0175] In some embodiments, the eye condition can be a retinal vein occlusion. Retinal vein occlusion is a blockage of the small veins that carry blood away from the retina. The retina is the layer of tissue at the back of the inner eye that converts light images to nerve signals and sends them to the brain. Retinal vein occlusion is most often caused by hardening of the arteries (atherosclerosis) and the formation of a blood clot. Blockage of smaller veins (branch veins or BRVO) in the retina often occurs in placeswhere retinal arteries that have been thickened or hardened by atherosclerosis cross over and place pressure on a retinal vein. Symptoms of retinal vein occlusion can include a sudden blurring or vision loss in all or part of one eye. In some embodiments, methods and pharmaceutical compositions as disclosed herein are used to treat retinal vein occlusion.
[0176] In some embodiments, the eye condition can be choroidal neovascularization (CNV), also known as wet AMD. Choroidal neovascularization can involve the growth of new blood vessels that originate from the choroid through a break in theBruchmembrane into the sub-retinal pigment epithelium (sub-RPE) or subretinal space,which canbeamajor cause of visual loss. CNV can create a sudden deterioration of central vision, noticeable within a few weeks. Other symptoms which can occur include color disturbances, and metamorphopsia (distortions in which straight lines appears wavy). Hemorrhagingof thenewbloodvessels canaccelerate theonset of symptomsofCNV.CNVmayalso include the feelingof pressure behind the eye. In someembodiments,methods andpharmaceutical compositions as disclosed herein are used to treat CNV or an eye condition associated with neovascularization.
[0177] The advanced "wet" form (neovascular or exudative) of AMD is less common, but may frequently cause a rapid and often substantial loss of central vision in patients. In the wet form of AMD, choroidal neovascularization forms and develops intoanetworkof vessels thatmaygrowunder and through the retinal pigment epithelium.As this is accompanied by leakage of plasma and / or hemorrhage into the subretinal space, there could be severe sudden loss of central vision if this occurs in the macula. The term "AMD", if not otherwise specified, can be either dry AMD or wet AMD. The present disclosure contemplates treatment or prevention of AMD,wet AMDand / or dry AMD. In someembodiments,methods and pharmaceutical compositions as disclosed herein are used to treat AMD.
[0178] In some embodiments, methods and pharmaceutical compositions as disclosed herein are used to prevent or treat an eye disease or condition that is responsive to at least one of the current standard of care or approved therapies, such as ranibizumabor bevacizumab. In someembodiments, a patient has been pre-treatedwith any oneof ranibizumab, bevacizumab, and any other approved therapeutics for the eye disease or condition, or any combination thereof, before receiving or qualifying for an administration of an anti-VEGF gene therapy.
[0179] In some embodiments, methods and pharmaceutical compositions disclosed herein, i.e., AAV gene therapy comprising an anti-VEGFagent, results in a reduction in neovascularization or CNV, asmeasured by percentage of grade IV lesions followingCNV formation according to color fundus photography, by at least 5%, at least 6%, at least7%, at least 8%,at least 9%,at least 10%,at least 11%,at least 12%,at least 13%,at least 14%,at least 15%,at least 16%,at least 17%, at least 18%,at least 19%,at least 20%,at least 25%,at least 30%,at least 35%,at least 40%,at least 45%,at least 50%,at least 55%,at least 60%,at least 65%,at least 70%,at least 75%,at least 80%,at least 85%,at least 90%,at least 95%,or at 26 EP 4 674 483 A2 5 10 15 20 25 30 35 40 45 50 55 least 100% as compared to a vehicle or buffer control.
[0180] In some embodiments, methods and pharmaceutical compositions disclosed herein, i.e., AAV gene therapy comprising an anti-VEGFagent, results in a reduction in neovascularization or CNV, asmeasured by percentage of grade IV lesions following CNV formation according to color fundus photography, that is comparable to an approved therapy. In some embodiments, the reduction in CNV, or the therapeutic effect, lasts longer with the administration of a gene therapy comprising an anti-VEGF agent as compared to a non-gene therapy-based injection or a protein injection.
[0181] In some cases, a rAAV virion or pharmaceutical composition thereof can at least partially ameliorate an eye condition, disease, or combinations thereof. In some instances, the eye condition or disease can be associated with neovascularization of the eye. In some cases, the eye condition or disease is any condition or disease responsive to or treatable with an anti-VEGF agent of the present disclosure.
[0182] In someembodiments, a gene therapy as described herein is used to treat any eye diseaseor condition involving abnormal neovascularization, e.g., as a result of abnormal VEGF and / or VEGFR activity or expression, AMD, diabetic retinopathy, and preeclampsia. In some embodiments, an anti-VEGF agent in a gene therapy is an agent that inhibits or interferes with a member of the VEGF family in mammals, which includes VEGF-A, B, C, D, and placenta growth factor (PIGF), or any combination or variant thereof. In some embodiments, an anti-VEGF agent in a gene therapy is an agent that inhibits or interfereswith anyoneof theVEGF-relatedproteins, e.g.,VEGF-EexpressedbysomevirusesandVEGF-F found in venom of some snakes, which may also have therapeutic properties for additional indications related to angiogenesis in vivo. In some embodiments, the anti-VEGF agent can also interfere with, bind, or inhibit placental growth factor (PIGF) in vivo. Methods of use
[0183] In some embodiments, present disclosure provides a method for treating a pathological angiogenesis related eye disease, comprising administering a pharmaceutically effective amount of the pharmaceutical compositions provided herein to a human subject in need of such treatment. In some embodiments, the disease is selected from the group of ocular neovascular diseases including age-related macular degeneration (AMD), wet-AMD, dry-AMD, retinal neovascu- larization, choroidal neovascularization diabetic retinopathy, proliferative diabetic retinopathy, retinal vein occlusion, central retinal vein occlusion, branched retinal veinocclusion, diabeticmacular edema, diabetic retinal ischemia, ischemic retinopathy and diabetic retinal edema, and any combination thereof.
[0184] In some embodiments, pharmaceutical compositions comprising a rAAV comprising a variant capsid protein (e.g., rAAV.7m8) and a nucleic acid sequence that encodes an anti-VEGFagent is used to treat or prevent AMD, including dry AMD and wet AMD. In some embodiments, pharmaceutical compositions comprising a rAAV comprising a variant capsid protein (e.g., rAAV.7m8) and a nucleic acid sequence that encodes an anti-VEGF agent is used to treat or prevent CNV, or reduce grade IV CNV lesions. In some embodiments, pharmaceutical compositions comprising a rAAV comprising a variant capsid protein (e.g., rAAV.7m8) and a nucleic acid sequence that encodes an anti-VEGF agent is used to treat or prevent any one of AMD, wet-AMD, dry-AMD, retinal neovascularization, choroidal neovascularization diabetic retinopathy, proliferative diabetic retinopathy, retinal vein occlusion, central retinal vein occlusion, branched retinal vein occlusion, RVO, diabetic macular edema, diabetic retinal ischemia, ischemic retinopathy and diabetic retinal edema, DR in patients with DME, and any combination thereof.
[0185] In some embodiments, the method of treating AMD, DME, RVO, or DR comprises pre-treating a patient with an approved therapy, e.g., ranibizumab or bevacizumab injection, before administering a gene therapy comprising a nucleic acid sequence of the anti-VEGF agent, e.g., ranibizumab or bevacizumab, to the same patient. In some embodiments, a patient is pre-treated with an approved therapy before receiving a one-time dose of the anti-VEGF gene therapy, as disclosedherein. Insomeembodiments,apatient is responsive toanyoneof ranibizumaborbevacizumab injectionbefore receiving a one-time dose of the anti-VEGF gene therapy, as disclosed herein. In some embodiments, a patient who is responsive to anyoneof ranibizumabor bevacizumab, orwhowaspre-treatedwithoneof ranibizumaborbevacizumab, is treatedwith ranibizumaborbevacizumabgene therapy, asdisclosedherein, followedbyaperiodofat least 1.5, 2, 3, 4, 5, 6, 7, 8, 9, 10 or more years, or more than 1.5, 2, 3, 4, 5, 6, 7, 8, 9, 10 or more years during which the patient does not receive any of these treatment for AMD. In some cases, after a patient receives an intravitreal injection of ranibizumab or bevacizumab gene therapy, the patient does not begin receiving ranibizumab or bevacizumab protein injection or another approved therapy until at least 1.5, 2, 3, 4, 5, 6, 7, 8, 9, 10 or more years have lapsed.
[0186] In some embodiments, ranibizumab or bevacizumab gene therapy, or any other anti-VEGF gene therapy, as disclosed herein is a one-timeadministration. In someembodiments, after a patient receives a unit dose of ranibizumabor bevacizumab gene therapy disclosed herein, the patient does not need to use any other approved protein-based therapeutics.
[0187] In some cases, patients who experience adverse effects associated with repeated injections of approved therapies for CNV or AMD, e.g., inflammation or bacterial infection, can be candidates for treatment with the anti-VEGF gene therapy, or ranibizumab or bevacizumab gene therapy, as disclosed herein. In some cases, such risks are lower in 27 EP 4 674 483 A2 5 10 15 20 25 30 35 40 45 50 55 gene therapy because it requires only one injection in a patient’s lifetime, or is given notmore than once in at least 2, 5, 10, 20, 30, 40, or 50 years. In some cases, treatment with the anti-VEGF gene therapy, or ranibizumab or bevacizumab gene therapy, as disclosed herein can be more cost-effective than protein-based injections because a gene therapy’s therapeutic effects can last longer and the cost of a one-time gene therapy injection may be lower than the combined cost of multiple, repeated injections of a protein.
[0188] Also, by not requiring repeated injections, gene therapy addresses the patient compliance and adherence challenge associated with therapies that require repeated injections, as non-compliance (e.g., when a patient forgets or missesoneormore scheduled injection) can result in vision loss anddeteriorationof the eyediseaseor condition. The rate of non-compliance and non-adherence to treatment regimens that require repeated or frequent trips tomedical offices for administration is higher among elderly patients, who are most impacted by AMD. Therefore, delivering an anti-VEGF agent into an eye of a patient via gene therapy, e.g., as a one-time intravitreal injection, can provide a more convenient treatment option for patients and improve patient outcomes by addressing the non-compliance and non-adherence problem.
[0189] In someembodiments, amethodof use comprises pre-treatingahumanpatient or subjectwith anapproveddrug that is considered the current standard of care, e.g., ranibizumab injection, or bevacizumab injection, determining the patient’s responsiveness to ranibizumab or bevacizumab, and administering the anti-VEGF gene therapy described herein to the patient who is responsive to an approved therapy. Determining a patient’s responsiveness to an approved therapy or a current standard of care can include, but not limited to, blood tests, immunoassay, ex vivo experiments, or administration of the ranibizumab or bevacizumab protein injection to the patient and assaying the patient’s responsive- ness to ranibizumab or bevacizumab.
[0190] In some embodiments, method of use of the anti-VEGF gene therapy described herein includes reconstituting a lyophilized form of the pharmaceutical composition described herein (i.e., rAAV2.7m8 comprising an anti-VEGF nucleic acid sequence) according to the drug label and administering said reconstituted anti-VEGF gene therapy to a subject or human patient. In some embodiments, method of use of the anti-VEGF gene therapy described herein includes administering a suspension of the pharmaceutical composition described herein according to the drug label and administering said suspensionof anti-VEGFgene therapy to asubject or humanpatient. In someembodiments, additional steps for administering a suspension include agitating the suspension before use and / or warming the suspension to room temperature.
[0191] In some embodiments, such human patient was pre-treated with an approved protein injection or current standard of care, e.g., ranibizumab injection or bevacizumab injection. In some embodiments, such patient receives no more than one injection or administration of the rAAV2.7m8‑ ranibizumabgene therapy for at least 2, 3, 4, 5, 6, 7, 8, 9, 10 or more years; or receives nomore than one injection or administration of the rAAV2.7m8-ranibizumab gene therapy inmore than 2, 3, 4, 5, 6, 7, 8, 9, 10 or more years.
[0192] In some embodiments, also disclosed herein are methods of preventing or treating an eye condition or disease, the method comprising administering to an individual in need thereof, e.g., an individual with an eye condition or disease responsive to an approved drug, an effective amount of a rAAV virion comprising a nucleic acid sequence that encodes an anti-VEGF agent, e.g., ranibizumab or bevacizumab, as described herein or a pharmaceutical composition thereof. In someembodiments, rAAV2.7m8‑ ranibizumabvirion canbeadministered via intraocular injection, by intravitreal injection, by subretinal injection, or by any other convenient mode or route of administration into an eye of an individual. Other convenient modes or routes of administration can include, e.g., intravenous, topical, eye drops, etc. In some embodi- ments, methods and pharmaceutical compositions disclosed herein involve administration by intravitreal injection.
[0193] A "therapeutically effective amount" as described herein can be a relatively broad range that can be determined throughclinical trials.For injectiondirectly into theeyeor intravitreal injection, a therapeuticallyeffectivedosecanbeon the orderof from1011 to1012or from1012 to1013vectorgenomesof7m8-ranibizumaboranyotheranti-VEGFgene therapy. In some embodiments, the unit dose or a therapeutically effective amount of 7m8-ranibizumab or any other anti-VEGF gene therapy is between 1010 to 1011, between 1011 to 1012, between 1010 to 1012, between 1012 to 1013, between 1011 to 1013, between 1012 to 1013, between 1012 to 1014, between 1011 to 1014, between 1011 to 1015, between 1012 to 1015, between 1013 to 1014, between 1014 to 1015, between 1015 to 1016, between 1016 to 1017, between 1017 to 1018, between 1018 to 1019, or between 1019 to 1020 vector genomes. In some embodiments, the unit dose of the pharmaceutical composition comprising 7m8-ranibizumab or any other anti-VEGF gene therapy of the disclosure is between 1×1010 to 2×1010, between 2×1010 to 3×1010, between 3×1010 to 4×1010, between 4×1010 to 5×1010, between 5×1010 to 6×1010, between 6×1010 to 7×1010, between 7×1010 to 8×1010, between 8×1010 to 9×1010, between 9×1010 to 10×1010, between 1×1011 to 2×1011, between 2×1011 to 3×1011, between 2×1011 to 2.5×1011, between 2.5×1011 to 3×1011, between 3×1011 to 4×1011, between 4×1011 to 5×1011, between 5×1011 to 6×1011, between 6×1011 to 7×1011, between 7×1011 to 8×1011, between 8×1011 to 9×1011, between 9×1011 to 10×1011, between 1×1012 to 2×1012, between 2×1012 to 3×1012, between 2.5×1012 to 3×1012, between 3×1012 to 4×1012, between 4×1012 to 5×1012, between 5×1012 to 6×1012, between 6×1012 to 7×1012, between 7×1012 to 8×1012, between 8×1012 to 9×1012, between 9×1012 to 10×1012, between 1×1013 to 2×1013, between 2×1013 to 3×1013, between 3×1013 to 4×1013, 28 EP 4 674 483 A2 5 10 15 20 25 30 35 40 45 50 55 between 4×1013 to 5×1013, between 5×1013 to 6×1013, between 6×1013 to 7×1013, between 7×1013 to 8×1013, between8×1013 to9×1013, or between9×1013 to10×1013vectorgenomes. In someembodiments, theunit doseof7m8‑ ranibizumab or any other anti-VEGF gene therapy of this disclosure is between 2.1×1011 or between 2.1×1012 vector genomes. In some embodiments, the unit dose of rAAVof this disclosure is between 1010 to 1013, between 1010 to 1011, between 1011 to 1012, between 1012 to 1013, or between 1013 to 1014 vector genomes.
[0194] In someembodiments, the unit dose of 7m8‑ ranibizumabor any other anti-VEGFgene therapy of this disclosure is between 1×1010 to 2×1010, between 2×1010 to 4×1010, between 3×1010 to 5×1010, between 4×1010 to 6×1010, between 5×1010 to 7×1010, between 6×1010 to 8×1010, between 7×1010 to 9×1010, between 8×1010 to 1011, between 1×1011 to 2×1011, between2×1011 to 4×1011, between3×1011 to 5×1011, between4×1011 to 6×1011, between5×1011 to 7×1011, between 6×1011 to 8×1011, between 7×1011 to 9×1011, between 8×1011 to 10×1011, between 1×1012 to 3×1012, between 2×1012 to 4×1012, between 3×1012 to 5×1012, between 4×1012 to 6×1012, between 5×1012 to 7×1012, between 6×1012 to 8×1012, between 7×1012 to 9×1012, between 8×1012 to 10×1012, between 1×1013 to 5×1013, between5×1013 to 10×1013, between 1012 to 5×1012, between5×1012 to 1×1013, between 7×1012 to 1×1013, between 8×1012 to 2×1013, between 9×1012 to 2×1013, between 9×1012 to 2×1013, between 9×1012 to 4×1013, between 1×1013 to 3×1013, between 1×1013 to 2×1013, between 2×1013 to 3×1013, between 3×1013 to 4×1013, between 4×1013 to 5×1013, between 5×1013 to 6×1013, between 6×1013 to 7×1013, between 7×1013 to 8×1013, between 8×1013 to 9×1013, or between 8×1013 to 1×1014 vector genomes.
[0195] In someembodiments, the total amount of 7m8-ranibizumabor any other anti-VEGFgene therapy injected into a humanpatient or subjectwithin aperiodof 5 to10years is nomore than1010 to1013, 1010 to1011, 1011 to1012, 1012 to1013, or 1013 to 1014 vector genomes, or no more than 1×1010 to 2×1010, 2×1010 to 4×1010, 3×1010 to 5×1010, 4×1010 to 6×1010, 5×1010 to 7×1010, 6×1010 to 8×1010, 7×1010 to 9×1010, 8×1010 to 1011, 1×1011 to 2×1011, 2×1011 to 4×1011, 3×1011 to 5×1011, 4×1011 to 6×1011, 5×1011 to 7×1011, 6×1011 to 8×1011, 7×1011 to 9×1011, 8×1011 to 10×1011, 1×1012 to 3×1012, 2×1012 to 4×1012, 3×1012 to 5×1012, 4×1012 to 6×1012, 5×1012 to 7×1012, 6×1012 to 8×1012, 7×1012 to 9×1012, 8×1012 to 10×1012, 1×1013 to 5×1013, 5×1013 to 10×1013, 1012 to 5×1012, 5×1012 to 1×1013, 7×1012 to 1×1013, 8×1012 to 2×1013, 9×1012 to 2×1013, 9×1012 to 2×1013, 9×1012 to 4×1013, 1×1013 to 3×1013, 1×1013 to 2×1013 , 2×1013 to 3×1013, 3×1013 to 4×1013, 4×1013 to 5×1013, 5×1013 to 6×1013, 6×1013 to 7×1013, 7×1013 to 8×1013, 8×1013 to 9×1013, or 8×1013 to 1×1014 vector genomes.
[0196] In some embodiments, the therapeutically effective amount of pharmaceutical compositions disclosed herein comprises between 2E12 to 6E12 vector genomes. In some embodiments, a unit dose comprises about 1E12, 1.5E12, 2E12, 2.5E12, 3E12, 3.5E12, 4E12, 4.5E12, 5E12, 5.5E12, 6E12, 6.5E12, 7E12, 7.5E12, 8E12, 8.5E12, 9E12, or 9.5E12 vector genomes. In some embodiments, a unit dose comprises between 1E12 to 1.5E12, between 1.5E12 to 2E12, between 2E12 to 2.5E12, between 2.5E12 to 3.0E12, between 3.0E12 to 3.5E12, between 3.5E12 to 4.0E12, between 4.0E12 to 4.5E12, between 4.5E12 to 5.0E12, between 5.0E12 to 5.5E12, between 5.5E12 to 6.0E12, between 6.0E12 to 6.5E12, between 6.5E12 to 7.0E12, between 7.0E12 to 7.5E12, between 7.5E12 to 8.0E12, between 8.0E12 to 8.5E12, between 8.5E12 to 9.0E12, between 9.0E12 to 9.5E12, or between 9.5E12 to 10E12 vector genomes. In some embodiments, a unit dose comprises at least 1E12, 1.5E12, 2E12, 2.5E12, 3E12, 3.5E12, 4E12, 4.5E12, 5E12, 5.5E12, 6E12, 6.5E12, 7E12, 7.5E12, 8E12, 8.5E12, 9E12, or 9.5E12 vector genomes. In some embodiments, a unit dose comprise no more than 1E12, 1.5E12, 2E12, 2.5E12, 3E12, 3.5E12, 4E12, 4.5E12, 5E12, 5.5E12, 6E12, 6.5E12, 7E12, 7.5E12, 8E12, 8.5E12, 9E12, 9.5E12, or 10E12 vector genomes.
[0197] In some embodiments, a lower concentration (e.g., vector genomes) is used for a unit dose to prevent aggregation, which can occur at higher concentrations. In some embodiments, a higher concentration, e.g., higher vector genomes, is selected for a unit dose to increase efficacy of the gene therapy, or tomaximize the delivery of the anti- VEGF transgene in one injection or in a one-time administration of the gene therapy. In some embodiments, higher concentrations of the pharmaceutical compositions disclosed herein allow smaller volumes of injection, which can reduce adverse effects associated with intravitreal injection, e.g., elevated intraocular pressure, inflammation, irritation, or pain.
[0198] In someembodiments, 7m8-ranibizumabor anyother anti-VEGFgene therapy or a pharmaceutical composition thereof canbeadministeredasasingledoseoraone-timedose. Insomeembodiments,more thanoneadministrationmay be employed to achieve the desired level of gene expression over a sustained period of various intervals, e.g., not more than once in at least 2 years, or at least 3, 4, 5, 6, 7, 8, 9, 10, or more years. In some embodiments, intravitreal injection of 7m8‑ ranibizumab or any other anti-VEGFgene therapy obviates a patient’s need to receive an approved protein injection for at least 1 year or 2, 3, 4, 5, 6, 7, 8, 9, 10, 20, 30 or more years. EXAMPLES Example 1: Efficacy evaluation of 7m8-sVEGFR‑1 in monkeys
[0199] Objective: Toassess the efficacyof 7m8-sFLT‑1 following intravitreal (IVT) administration at 2×1012 vg to inhibit the development of choroidal neovascularization (CNV) induced by laser photocoagulation in African greenmonkeys. An 29 EP 4 674 483 A2 5 10 15 20 25 30 35 40 45 50 55 additional objective can be to evaluate regional sFLT‑1 expression in ocular tissues.
[0200] CNV lesionmodel inmonkeys isagenerally acceptedasandawidelyusedstandardprimatemodel for assessing potential efficacy of therapies for treating eye diseases associated with neovascularization, such as wet AMD.
[0201] SubjectRecruitment:Monkeys underwent baseline screening to assess ocular and general health by tonometry, slit lamp biomicroscopy, fundoscopy, color fundus photography (CFP), fluorescence angiography (FA) and optical coherence tomography (OCT). Thirty-nine animals with normal findings were enrolled in the study and randomized into four treatment groups by baseline body weight and gender (Table 1). Atropine 1% ophthalmic ointment was applied following baseline exam. Table 1: Treatment Assignment Group N Treatment OU Route Dose (µL) Laser OU Slit lamp & CFP FA & OCT Terminus & tissue collection 1 6 AAV2.7m8- sVEGFR‑1 IVT;Day 0 1x100µ L Day 56 Baseline, days 0 (post-injec- tion), 7, 14, 56 and 84 Baseline, post-bleb, day 70 & 84 Day 85 2 6 Vehicle IVT;Day 0 1x100µ L Day 56 * CFP will be additionally performed on day 21 if day 14 images do not reveal clear images of stabilized blebs. Slit lamp was performed prior to laser on day 56 but not immediately post-injection on day 0.
[0202] On study day 0 groups 1‑2 monkeys received IVT AAV2.7m8-sFLT‑1 or vehicle OU in accordance with the treatment schedule (Table 1). Prior to IVT dosing, topical local anesthesia was administered (0.5% proparacaine) and eyes were disinfected with 5% Betadine and rinsed with sterile normal saline. IVT injections can be administered using a 31-gauge 0.5-inch needle placed 2 mm posterior to the limbus in the inferior temporal quadrant, targeting the central vitreous.
[0203] All IVT injections can be followed by topical administration of 0.3% ciprofloxacin, or equivalent antibiotic ophthalmic solution, and 1% atropine sulfate ointment.
[0204] On Day 56, CNV was induced between temporal vascular arcades with laser bums. Nine laser spots were symmetrically placed in eacheyebyanophthalmologist employingan IridexOculightTX532nm laserwitha laserduration of 100ms, spot size 50µm,power 750mW.Laser spotswereapplied using a0.9x contact laser lens. The target location of laser spots were mapped by a trained ophthalmologist on color fundus images obtained prior to laser treatment (and subsequent to bleb placement) for reference during laser spot placement. Color fundus photography was performed immediately after the laser treatment to document the laser lesions. Any spots demonstrating severe retinal / subretinal hemorrhage immediately post-laserwasexcluded fromanalyses.FIG. 1 illustrates anexemplary fundusphotographof an eye of a non-human primate after induction of CNV lesions by laser irradiation.
[0205] Bilateral color fundus images of the retina were captured with 50 degree of view centered on the fovea using a Topcon TRC‑50EX retinal camera with Canon 6D digital imaging hardware and New Vision Fundus Image Analysis Systemsoftware. FAwas performedwith intravenous administration of 0.1mL / kg of 10%sodiumfluorescein. Fluorescein leakage in angiograms of CNV lesions was graded (I-IV; Table 2 by a masked ophthalmologist assessing composites generated after uniformadjustment of image intensity. Lesion grading assessment was confirmed on images of fundus by two other trained ophthalmologists. Image fluorescence densitometry analysis of late-stage raw angiograms can also be performed using ImageJ software. Table 2: Laser lesion grading scales LesionGrade Definition I No hyperfluorescence - Compare pre-FA with 30 sec post-FA. Look for absence of hyperfluores- cence in lesion II Hyperfluorescence without leakage - Compare 30 sec FA with 3 and 6 min FA. Look for hyper- fluoresence without significant residual staining in 6 min FA. III Hyperfluorescence early or mid-transit and late leakage - Compare 30 sec FA with 3 and 6 min FA. Look for significant residual staining in lesion at 6 min FA. 30 EP 4 674 483 A2 5 10 15 20 25 30 35 40 45 50 55 (continued) LesionGrade Definition IV Hyperfluorescence early or mid-transit and late leakage extending beyond the borders of the trea- ted area - Compare 30 sec FA with 3 and 6 min FA. Look for consistent staining beyond the border of the lesion as seen in 30 sec FA.
[0206] Subjects were assessed twice daily for general wellbeing. Detailed observations were performed once weekly. Body weights were obtained at the time of baseline screening and every two weeks during the in-life study.
[0207] All animalswereeuthanizedwithpentobarbital after confirming thequality of fundus imagingonDay85,or shortly thereafter, pending reviewof images. Animalswere then beeuthanizedwith pentobarbital andglobes enucleated.Excess orbital tissue was trimmed and both OD and OS globes was flash frozen in liquid nitrogen then dissected along frozen tissue planes at room temperature to isolate vitreous and retinal with choroidal sub-tissues. After collection of vitreous, 5 mm punches of neural retina with RPE / choroid were taken from the macula and superior, inferior, temporal and nasal regions. As space permits, additional peripheral punches were made. The retina with underlying RPE / choroidal tissues from each punch was transferred to pre-tared labeled cryotubes, and weighed and flash frozen in liquid nitrogen. Before andafter collectionof the punchbiopsies, a photographof the flatmounted retinawas takenwith indication of orientation to document the regions from which the punches were collected.
[0208] Statistical methods: A Fisher’s exact test was used to evaluate incidence of different lesion grades. A two way ANOVA with repeated measures followed by Tukey-Kramer test or a contrast procedure was used to analyze the OCT CNVcomplex area and angiogram image densitometry data. Non-parametric testswere applied if the data is not normally distributed and has an unequal variance. P value of 0.05 or less was considered statistically significant.
[0209] FIG. 3 illustrates a plot of the percentage of grade IV lesions on days 14 and 28 of animals of groups 3 and 4, injected intravitreally with either AAV2.7m8‑ sVEGFR‑1 or a vehicle control comprising formulation buffer only. CNV lesions were induced by laser irradiation immediately after injection in each group of test subjects, and color fundus photography was used to grade each lesion on a scale of I-IV. Monkeys treated with AAV2.7m8‑ sVEGFR‑1 showed a slight decrease in the amount of grade IV lesions compared to administration of vehicle alone for the fundus images collected on day 14 when administered intravitreally. Monkeys treated with intravitreal AAV2.7m8-sFLT‑1 showed no significant decrease in in the amount of grade IV lesions compared to administration of vehicle alone at day 28. Example 2: Efficacy evaluation of 7m8-ranibizumab in monkeys
[0210] Similar in vivo studies as described in Example 1 were performed in monkeys using the same protocol and AAV2.7m8‑ ranibizumab,which is rAAV2comprising the 7m8sequence inserted betweenpositions 587and588of capsid protein VP1 of AAV2 and a nucleic acid sequence that encodes ranibizumab.
[0211] As illustrated in FIG. 4, AAV2.7m8-ranibizumab administered intravitreally prevented the occurrence of laser- induced grade IV CNV lesions. AAV2.7m8-ranibizumab, ranibizumab alone (positive control), or vehicle control compris- ing formulation buffer were administered to eyes of non-human primates via intravitreal injection at a dose of 2× 1012 vg. CNV lesions were then induced by laser irradiation in all groups, and color fundus photography was used to grade each lesion on a scale of I-IV. Measurements of percentage of grade IV lesions were then averaged and plotted. AAV2.7m8- ranibizumab significantly reducedCNV lesions in vivo to levels comparable to ranibizumab alone at day 14 (light gray bar) and at day 28 (dark gray bar).
[0212] These in vivo studies in monkeys suggested AAV2.7m8-ranibizumab can be a viable gene therapy option for humans.
[0213] Certain embodiments of the invention are set out in the following numbered paragraphs: 1. A method of treating an eye disease or condition, the method comprising administering a unit dose of a pharmaceutical suspension to a primate subject by injection to an eye, wherein the unit dose of the pharmaceutical suspension comprises: between 1E12 to 1E13 vector genomes of rAAV having a variant capsid protein comprising an insertion of amino acid sequence selected from LGETTRP, NETITRP, KAGQANN, KDPKTTN, KDTDTTR, RAGGSVG, AVDTTKF, and STGKVPN at a position that corresponds to amino acids 570‑611 of capsid protein VP1 in AAV2; and a heterologous sequence encoding an anti-vascular endothelial growth factor (anti-VEGF) polypeptide. 2. The method of paragraph 1, wherein the unit dose comprises between 2E12 to 6E12 vector genomes. 3. The method of paragraph 1, wherein the subject is a non-human primate. 31 EP 4 674 483 A2 5 10 15 20 25 30 35 40 45 50 55 4. The method of paragraph 1, wherein the subject is a human. 5. The method of paragraph 1, wherein the eye condition or disease is neovascular (wet) age-related macular degeneration (AMD), macular edema following retinal vein occlusion, diabetic macular edema (DME), retinal vein occlusion, or diabetic retinopathy associated with DME. 6. The method of paragraph 1, wherein the eye condition or disease is choroidal neovascularization or AMD. 7. Themethod of paragraph 1, wherein administering the suspension results in a reduction in percentage of grade IV lesions by at least 5% as compared to a vehicle control, as measured by color fundus photography. 8. The method of paragraph 7, wherein the reduction in percentage of grade IV lesions is at least 10%. 9. The method of paragraph 1, wherein the unit dose comprises a volume that is not more than 100 µL. 10. The method of paragraph 1, wherein the unit dose comprises a volume that is not more than 50 µL. 11. Themethod of paragraph 1, wherein the insertion is LGETTRP at a position between amino acids 587 and 588 in AAV2. 12. The method of paragraph 1, wherein the subject is responsive to at least one of ranibizumab, bevacizumab, and sVEGFR‑1. 13. The method of paragraph 1, wherein the subject has been pre-treated with ranibizumab or bevacizumab. 14. The method of paragraph 1, wherein the injection is intravitreal. 15. The method of paragraph 1, wherein the injection is subretinal. 16. Themethod of paragraph 1, wherein the administering by injection occurs not more than once in at least 2 years. 17. Themethod of paragraph 1, wherein the administering by injection occurs not more than once in at least 5 years. 18. The method of paragraph 1, wherein the administering is a one-time administration. 19. The method of paragraph 1, further comprising agitating the suspension to ensure even distribution prior to the administering step. 20. The method of paragraph 1, further comprising warming the suspension to room temperature prior to the administering step. 21. The method of paragraph 1, wherein the suspension further comprises a surfactant. 22. The method of paragraph 21, wherein the surfactant is selected from polysorbates, sodium dodecyl sulfate, sodium lauryl sulfate, lauryl dimethyl amine oxide, polyethoxylated alcohols, polyoxyethylene sorbitan, octoxynol, Brij, pluronic, and polyoxyl castor oil. 23. The method of paragraph 1, wherein the suspension further comprises phenol, mannitol, sorbitol, or sodium chloride. 24. Themethod of paragraph 1, further comprising administering an antibiotic solution or an atropine sulfate ointment after the injection. 25. The method of paragraph 24, wherein the antibiotic solution comprises ciprofloxacin. 26. The method of paragraph 1, wherein the anti-VEGF polypeptide is a humanized monoclonal antibody. 27. The method of paragraph 1, wherein the anti-VEGF polypeptide is an antibody fragment or Fab. 32 EP 4 674 483 A2 5 10 15 20 25 30 35 40 45 50 55 28. The method of paragraph 1, wherein the humanized monoclonal antibody is ranibizumab or bevacizumab. 29. The method of paragraph 1, wherein the anti-VEGF polypeptide is a soluble, truncated form of VEGF receptor 1 (sVEGFR‑1). 30. A method of treating an eye condition or disease, the method comprising: (a) agitating a suspension composition, comprising: a rAAV having a variant capsid protein comprising an insertion of amino acid sequence selected from LGETTRP, NETITRP, KAGQANN, KDPKTTN, KDTDTTR, RAGGSVG, AVDTTKF, and STGKVPN at a position that corresponds to amino acids 570‑611 of capsid protein VP1 in AAV2; and a heterologous sequence encoding an anti-vascular endothelial growth factor (anti-VEGF) polypeptide; and (b) administering the suspension composition to an eye of a human subject via injection. 31. The method of paragraph 30, wherein the insertion is LGETTRP between amino acids 587 and 588 of AAV2. 32. Themethod of paragraph 30,wherein the subject is characterized as having been pre-treatedwith ranibizumabor bevacizumab. 33. Themethod of paragraph 30, wherein the subject is responsive to at least one of ranibizumab and bevacizumab. 34. The method of paragraph 30, wherein the anti-VEGF polypeptide is a humanized monoclonal antibody. 35. The method of paragraph 30, wherein the anti-VEGF polypeptide is an antibody fragment or Fab. 36. The method of paragraph 34, wherein the humanized monoclonal antibody is ranibizumab or bevacizumab. 37. Themethod of paragraph 30, wherein the anti-VEGF polypeptide is a soluble, truncated form of VEGF receptor 1 (sVEGFR‑1). 38. The method of paragraph 30, wherein the volume administered to the subject is not more than 50 µL. 39. The method of paragraph 30, wherein the volume administered to the subject is not more than 100 µL. 40. The method of paragraph 30, wherein the volume comprises a unit dose of between 1E12 to 1E13 vector genomes. 41. The method of paragraph 30, wherein the volume comprises a unit dose of between 2E12 to 6E12 vector genomes. 42. The method of paragraph 30, wherein the administering step occurs not more than once in at least 2 years. 43. The method of paragraph 30, wherein the administering step is a one-time injection. 44. Themethod of paragraph 30, further comprising assaying the subject for responsiveness to at least one approved therapy before administering the composition. 45. The method of paragraph 44, wherein the approved therapy comprises ranibizumab and bevacizumab. 46. The method of paragraph 30, wherein the suspension comprises a pharmaceutically acceptable excipient. 47. The method of paragraph 46, wherein the excipient comprises a surfactant or a stabilizer. 48. The method of paragraph 47, wherein the surfactant is selected from polysorbates, sodium dodecyl sulfate, sodium lauryl sulfate, lauryl dimethyl amine oxide, polyethoxylated alcohols, polyoxyethylene sorbitan, octoxynol, Brij, pluronic, and polyoxyl castor oil. 49. The method of paragraph 46, wherein the pharmaceutically acceptable excipient comprises phenol, mannitol, 33 EP 4 674 483 A2 5 10 15 20 25 30 35 40 45 50 55 sorbitol, or sodium chloride. 50. The method of paragraph 30, wherein the eye condition or disease is neovascular (wet) age-related macular degeneration (AMD), macular edema following retinal vein occlusion, diabetic macular edema (DME), retinal vein occlusion, or diabetic retinopathy associated with DME. 51. The method of paragraph 30, wherein the eye condition or disease is choroidal neovascularization or AMD. 52. The method of paragraph 30, wherein the injection is intravitreal. 53. The method of paragraph 30, wherein the injection is subretinal. 54. Themethod of paragraph 30, wherein the insertion is LGETTRPat a position between amino acids 587 and 588 in AAV2. 55. The method of paragraph 30, further comprising warming the suspension to room temperature before admin- istering. 56. Apharmaceutical composition comprising aunit doseof a suspension, comprising: a rAAVhavinga variant capsid protein comprising an insertion of amino acid sequence selected from LGETTRP, NETITRP, KAGQANN, KDPKTTN, KDTDTTR, RAGGSVG, AVDTTKF, and STGKVPN at a position that corresponds to amino acids 570‑611 of capsid protein VP1 in AAV2; and a heterologous sequence encoding an anti-vascular endothelial growth factor (anti-VEGF) polypeptide. 57.Thepharmaceutical compositionofparagraph56,wherein theunit dose isbetween1E12 to1E13vectorgenomes. 58. The pharmaceutical composition of paragraph 56, wherein the unit dose is between 2E12 to 6E12 vector genomes. 59. The pharmaceutical composition of paragraph 56, wherein the suspension is refrigerated. 60. A kit, comprising the pharmaceutical composition of paragraph 56 and a solution for diluting the pharmaceutical composition. 61. The kit of paragraph 60, wherein the solution comprises a buffer, salt, alcohol, a surfactant, or any combination thereof. 62. The kit of paragraph 60, further comprising a syringe. 63. Thepharmaceutical compositionof paragraph56,wherein theanti-VEGFpolypeptide isahumanizedmonoclonal antibody. 64. The pharmaceutical composition of paragraph 56, wherein the anti-VEGF polypeptide is an antibody fragment or Fab. 65. The pharmaceutical composition of paragraph 56,wherein the humanizedmonoclonal antibody is ranibizumabor bevacizumab. 66. The pharmaceutical composition of paragraph 56, wherein the anti-VEGFpolypeptide is a soluble, truncated form of VEGF receptor 1 (sVEGFR‑1). 67. The pharmaceutical composition of paragraph 56,wherein the insertion is LGETTRPat a position between amino acids 587 and 588 in AAV2. 34 EP 4 674 483 A2 5 10 15 20 25 30 35 40 45 50 55 35 EP 4 674 483 A2 5 10 15 20 25 30 35 40 45 50 55 36 EP 4 674 483 A2 5 10 15 20 25 30 35 40 45 50 55 37 EP 4 674 483 A2 5 10 15 20 25 30 35 40 45 50 55 38 EP 4 674 483 A2 5 10 15 20 25 30 35 40 45 50 55 39 EP 4 674 483 A2 5 10 15 20 25 30 35 40 45 50 55 40 EP 4 674 483 A2 5 10 15 20 25 30 35 40 45 50 55 41 EP 4 674 483 A2 5 10 15 20 25 30 35 40 45 50 55 42 EP 4 674 483 A2 5 10 15 20 25 30 35 40 45 50 55 43 EP 4 674 483 A2 5 10 15 20 25 30 35 40 45 50 55 Claims 1. A pharmaceutical composition comprising: 44 EP 4 674 483 A2 5 10 15 20 25 30 35 40 45 50 55 a. an rAAV having a variant capsid protein comprising an amino acid sequence insertion of 5 to 11 amino acids in the solvent-accessible portion of the VP1 capsid protein GH loop, which insertion confers increased infectivity of retinal cells; a nucleic acid encoding (i) a sequence having at least 95% identity to Ranibizumab light chain of sequence DIQLTQSPSSLSASVGDRVTITCSASQDISNYLNWYQQKPGKAPKVLIYFTSS LHSGVPSRFSGS GSGTDFTLTISSLQPEDFATYYCQQYSTVPWTFGQGTKV EIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNN FYPREAKVQWKVDNALQS GNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTK SFNRGEC (SEQ ID NO: 9) and (ii) a sequence having at least 95% identity to Ranibizumab heavy chain of sequence and b. a pharmaceutically acceptable excipient; for use in a method of treating an eye disease or condition selected from neovascular (wet) age-related macular degeneration (AMD), choroidal neovascularization,macular edema following retinal vein occlusion, diabeticmacular edema (DME), retinal vein occlusion and diabetic retinopathy associated with DME, the method comprising administering a unit dose of the pharmaceutical composition by intravitreal injection to an eye of a primate subject in need thereof. 2. Thepharmaceutical composition foruseaccording toclaim1,wherein the rAAV isselected fromAAV1,AAV2,AAV2.5, AAV3, AAV4, AAV5, AAV6, AAV7, AAV8, AAV9, AAV10, AAV11, AAV12, rh10, AAV-DJ, and any hybrid or chimeric AAV thereof. 3. Thepharmaceutical composition for useaccording to claim1,wherein theaminoacid sequence insertionpositionand rAAV serotype is selected from: between 587 and 588 of AAV2, between amino acids 590 and 591 of AAV1, between amino acids 575 and 576 of AAV5, between amino acids 590 and 591 of AAV6, between amino acids 589 and 590 of AAV7, between amino acids 590 and 591 of AAV8, between amino acids 588 and 589 of AAV9, and between amino acids 589 and 590 of AAV10. 4. The pharmaceutical composition for use according to any one of the preceding claims, wherein the amino acid sequence insertion is selected from LGETTRP (7m8), NETITRP, KAGQANN, KDPKTTN, KDTDTTR, RAGGSVG, AVDTTKF, and STGKVPN. 5. The pharmaceutical composition for use according to claim 1, wherein the insertion comprises an amino acid sequence LGETTRP (7m8): (i) inserted in a rAAV2 between positions 587 and 588 of the AAV2 capsid protein VP1; (ii) inserted in a rAAV1 between amino acids 590 and 591 of the AAV1 capsid protein VP1; (iii) inserted in a rAAV5 between amino acids 575 and 576 of the AAV5 capsid protein VP1; (iv) inserted in a rAAV6 between amino acids 590 and 591 of the AAV6 capsid protein VP1; (v) inserted in a rAAV7 between amino acids 589 and 590 of the AAV7 capsid protein VP1; (vi) inserted in a rAAV8 between amino acids 590 and 591 of the AAV8 capsid protein VP1; (vii) inserted in a rAAV9 between amino acids 588 and 589 of the AAV9 capsid protein VP1; or (viii) inserted in a rAAV10 between amino acids 589 and 590 of the AAV10 capsid protein VP1. 6. The pharmaceutical composition for use according to any one of the preceding claims, wherein the unit dose is: (a) between 1E8 to 3E14 vector genomes; (b) between 1E10 to 1E13 vector genomes; (c) between 1E9 to 1E13 vector genomes; or (d) between 2E12 to 6E12 vector genomes. 45 EP 4 674 483 A2 5 10 15 20 25 30 35 40 45 50 55 7. Thepharmaceutical composition foruseaccording toanyoneof theprecedingclaims,wherein thesubject isahuman. 8. The pharmaceutical composition for use according to any one of the preceding claims, wherein the rAAV comprises a nucleic acid encoding the Ranibizumab light chain of sequence and the Ranibizumab heavy chain of sequence 9. The pharmaceutical composition for use according to any one of the preceding claims, wherein: (a) the subject is responsive to at least one of ranibizumab, bevacizumab, and sVEGFR‑1; and / or (b) the subject has been pre-treated with ranibizumab or bevacizumab. 10. The pharmaceutical composition for use according to any one of the preceding claims, further comprising admin- istering anantibiotic solution, optionally anantibiotic solution comprising ciprofloxacin, or anatropine sulfate ointment after the injection. 11. The pharmaceutical composition for use according to any one of the preceding claims, wherein administering the composition results ina reduction inpercentageof grade IV lesionsbyat least 5%,orbyat least 10%,ascompared toa vehicle control, as measured by color fundus photography. 12. Thepharmaceutical composition for useaccording to anyoneof thepreceding claims,wherein theunit dose: (a) hasa volume that is not more than 100 µl or (B) has a volume not more than 50 µl. 13. The pharmaceutical composition for use according to any one of the preceding claims, wherein (a) the administering by injection occurs not more than once in at least two years or not more than once in at least five years; or (b) the administering is a one-time administration. 14. The pharmaceutical composition for use according to any one of the preceding claims, wherein the pharmaceutical composition isa suspension, optionallywherein thesuspension further comprises: (a) a surfactant, optionallywherein the surfactant is selected from polysorbates, sodium dodecyl sulfate, sodium lauryl sulfate, lauryl dimethyl amine oxide, polyethoxylated alcohols, polyoxyethylene sorbitan, octoxynol, Brij, pluronic and polyoxyl castor oil; and / or phenol, mannitol, sorbitol and sodium chloride, or (b) a stabilizer. 15. The pharmaceutical composition for use according to claim 14, further comprising: (a) agitating the suspension to ensure even distribution prior to the administering step; and / or (b) warming the suspension to room temperature prior to the administering step. 46 EP 4 674 483 A2 5 10 15 20 25 30 35 40 45 50 55 47 EP 4 674 483 A2 48 EP 4 674 483 A2 49 EP 4 674 483 A2 50 EP 4 674 483 A2 51 EP 4 674 483 A2 REFERENCES CITED IN THE DESCRIPTION This list of references cited by the applicant is for the reader’s convenience only. It does not form part of the European patent document. Even though great care has been taken in compiling the references, errors or omissions cannot be excluded and the EPO disclaims all liability in this regard. Patent documents cited in the description • US 62351231
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[0144] (19) *EP004674483A3* (11) EP 4 674 483 A3 (12) EUROPEAN PATENT APPLICATION (88) Date of publication A3: 25.03.2026 Bulletin 2026 / 13 (43) Date of publication A2: 07.01.2026 Bulletin 2026 / 02 (21) Application number: 25208689.7 (22) Date of filing: 16.06.2017 (51) International Patent Classification (IPC): C12N 15 / 09 (2006.01) C12N 15 / 86 (2006.01) C12N 15 / 861 (2006.01) C07K 14 / 705 (2006.01) C07K 14 / 005 (2006.01) A61K 38 / 17 (2006.01) A61F 9 / 008 (2006.01) A61K 39 / 395 (2006.01) A61K 48 / 00 (2006.01) A61P 27 / 02 (2006.01) (52) Cooperative Patent Classification (CPC): A61K 48 / 005; A61K 31 / 46; A61K 31 / 496; A61K 48 / 0075; A61P 27 / 02; C07K 14 / 005; C07K 16 / 22; C12N 15 / 86; A61K 2039 / 505; C07K 2319 / 00; C12N 2750 / 14122; C12N 2750 / 14143 (84) Designated Contracting States: AL AT BE BG CH CY CZ DE DK EE ES FI FR GB GR HR HU IE IS IT LI LT LU LV MC MK MT NL NO PL PT RO RS SE SI SK SM TR (30) Priority: 16.06.2016 US 201662351231 P (62) Document number(s) of the earlier application(s) in accordance with Art. 76 EPC: 24184081.8 / 4 427 808 22154859.7 / 4 083 203 17814228.7 / 3 472 317 (71) Applicant: Adverum Biotechnologies, Inc. Redwood City, CA 94063 (US) (72) Inventors: • BLUMENKRANZ, Mark Redwood City, 94063 (US) • GASMI, Mehdi Redwood City, 94063 (US) (74) Representative: EIP Fairfax House 15 Fulwood Place London WC1V 6HU (GB) (54) COMPOSITIONS AND METHODS FOR REDUCING OCULAR NEOVASCULARIZATION (57) The present disclosure provides pharmaceuti- cal compositions and methods thereof for the prevention or treatment of ocular neovascularization, such as AMD, in a subject, by administering to the subject a pharma- ceutical composition comprising a rAAV vector having a nucleic acid sequence that encodesananti-VEGFagent. EP 4 67 4 48 3 A 3 Processed by Luminess, 75001 PARIS (FR) 2 EP 4 674 483 A3 5 10 15 20 25 30 35 40 45 50 55 3 EP 4 674 483 A3 5 10 15 20 25 30 35 40 45 50 55 4 EP 4 674 483 A3 5 10 15 20 25 30 35 40 45 50 55 5 EP 4 674 483 A3 5 10 15 20 25 30 35 40 45 50 55 6 EP 4 674 483 A3 5 10 15 20 25 30 35 40 45 50 55 7 EP 4 674 483 A3 5 10 15 20 25 30 35 40 45 50 55 8 EP 4 674 483 A3 5 10 15 20 25 30 35 40 45 50 55 9 EP 4 674 483 A3 5 10 15 20 25 30 35 40 45 50 55 10 EP 4 674 483 A3 5 10 15 20 25 30 35 40 45 50 55 用於減少眼部新生血管的組合物和方法 摘要 本揭露提供了一種藥物組合物及其方法,用於預防或治療受試者的眼部新生血管,例 如老年黃斑部病變(AMD)。該方法透過向受試者施用一種藥物組合物來實現,該組 合物包含一種重組腺相關病毒(rAAV)載體,該載體具有編碼抗血管內皮生長因子 (VEGF)藥物的核酸序列。 摘要
Claims
1. A pharmaceutical composition comprising: a. an rAAV having a variant capsid protein comprising an amino acid sequence insertion of 5 to 11 amino acids in the solvent-accessible portion of the VP1 capsid protein GH loop, which insertion confers increased infectivity of retinal cells; a nucleic acid encoding (i) a sequence having at least 95% identity to Ranibizumab light chain of sequence DIQLTQSPSSLSASVGDRVTITCSASQDISNYLNWYQQKPGKAPKVLIYFTSS LHSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQYSTVPWTFGQGTKV EIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQS GNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTK SFNRGEC (SEQ ID NO: 9) and (ii) a sequence having at least 95% identity to Ranibizumab heavy chain of sequence and b. a pharmaceutically acceptable excipient; for use in a method of treating an eye disease or condition selected from neovascular (wet) age-related macular degeneration (AMD), choroidal neovascularization, macular edema following retinal vein occlusion, diabetic macular edema (DME), retinal vein occlusion and diabetic retinopathy associated with DME, the method comprising administering a unit dose of the pharmaceutical composition by intravitreal injection to an eye of a primate subject in need thereof.
2. The pharmaceutical composition for use according to claim 1, wherein the rAAV is selected from AAV1, AAV2, AAV2.5, AAV3, AAV4, AAV5, AAV6, AAV7, AAV8, AAV9, AAV10, AAV11, AAV12, rh10, AAV-DJ, and any hybrid or chimeric AAV thereof.
3. The pharmaceutical composition for use according to claim 1, wherein the amino acid sequence insertion position and rAAV serotype is selected from: between 587 and 588 of AAV2, between amino acids 590 and 591 of AAV1, between amino acids 575 and 576 of AAV5, between amino acids 590 and 591 of AAV6, between amino acids 589 and 590 of AAV7, between amino acids 590 and 591 of AAV8, between amino acids 588 and 589 of AAV9, and between amino acids 589 and 590 of AAV10.
4. The pharmaceutical composition for use according to any one of the preceding claims, wherein the amino acid sequence insertion is selected from LGETTRP (7m8), NETITRP, KAGQANN, KDPKTTN, KDTDTTR, RAGGSVG, AVDTTKF, and STGKVPN.
5. The pharmaceutical composition for use according to claim 1, wherein the insertion comprises an amino acid sequence LGETTRP (7m8): (i) inserted in a rAAV2 between positions 587 and 588 of the AAV2 capsid protein VP1; (ii) inserted in a rAAV1 between amino acids 590 and 591 of the AAV1 capsid protein VP1; (iii) inserted in a rAAV5 between amino acids 575 and 576 of the AAV5 capsid protein VP1; (iv) inserted in a rAAV6 between amino acids 590 and 591 of the AAV6 capsid protein VP1; (v) inserted in a rAAV7 between amino acids 589 and 590 of the AAV7 capsid protein VP1; (vi) inserted in a rAAV8 between amino acids 590 and 591 of the AAV8 capsid protein VP1; (vii) inserted in a rAAV9 between amino acids 588 and 589 of the AAV9 capsid protein VP1; or (viii) inserted in a rAAV10 between amino acids 589 and 590 of the AAV10 capsid protein VP1.
6. The pharmaceutical composition for use according to any one of the preceding claims, wherein the unit dose is: (a) between 1E8 to 3E14 vector genomes; (b) between 1E10 to 1E13 vector genomes; (c) between 1E9 to 1E13 vector genomes; or (d) between 2E12 to 6E12 vector genomes.
7. The pharmaceutical composition for use according to any one of the preceding claims, wherein the subject is a human.
8. The pharmaceutical composition for use according to any one of the preceding claims, wherein the rAAV comprises a nucleic acid encoding the Ranibizumab light chain of sequence and the Ranibizumab heavy chain of sequence 9. The pharmaceutical composition for use according to any one of the preceding claims, wherein: (a) the subject is responsive to at least one of ranibizumab, bevacizumab, and sVEGFR-1; and / or (b) the subject has been pre-treated with ranibizumab or bevacizumab.
10. The pharmaceutical composition for use according to any one of the preceding claims, further comprising administering an antibiotic solution, optionally an antibiotic solution comprising ciprofloxacin, or an atropine sulfate ointment after the injection.
11. The pharmaceutical composition for use according to any one of the preceding claims, wherein administering the composition results in a reduction in percentage of grade IV lesions by at least 5%, or by at least 10%, as compared to a vehicle control, as measured by color fundus photography.
12. The pharmaceutical composition for use according to any one of the preceding claims, wherein the unit dose: (a) has a volume that is not more than 100 µl or (B) has a volume not more than 50 µl.
13. The pharmaceutical composition for use according to any one of the preceding claims, wherein (a) the administering by injection occurs not more than once in at least two years or not more than once in at least five years; or (b) the administering is a one-time administration.
14. The pharmaceutical composition for use according to any one of the preceding claims, wherein the pharmaceutical composition is a suspension, optionally wherein the suspension further comprises: (a) a surfactant, optionally wherein the surfactant is selected from polysorbates, sodium dodecyl sulfate, sodium lauryl sulfate, lauryl dimethyl amine oxide, polyethoxylated alcohols, polyoxyethylene sorbitan, octoxynol, Brij, pluronic and polyoxyl castor oil; and / or phenol, mannitol, sorbitol and sodium chloride, or (b) a stabilizer.
15. The pharmaceutical composition for use according to claim 14, further comprising: (a) agitating the suspension to ensure even distribution prior to the administering step; and / or (b) warming the suspension to room temperature prior to the administering step.