Colon cancer diagnostic marker, method for assisting in the diagnosis of colon cancer, method for collecting data for the diagnosis of colon cancer, diagnostic kit for colon cancer, therapeutic agent for colon cancer, method for treating colon cancer, and method for diagnosing colon cancer
Specific microRNAs, particularly hsa-miR-129-1-3p and hsa-miR-566, enhance colorectal cancer diagnosis by providing high accuracy and sensitivity, addressing the limitations of existing methods in detecting early-stage colorectal cancer.
Patent Information
- Application Number
- JP2021540745
- Authority / Receiving Office
- JP · JP
- Patent Type
- Patents
- Current Assignee / Owner
- Priority Date
- 2019-08-16
- Filing Date
- 2020-08-12
- Publication Date
- 2025-01-08
- Estimated Expiration
- 2040-08-12
AI Technical Summary
Current methods for diagnosing colorectal cancer, such as fecal occult blood tests and biomarkers like CEA and CA19-9, suffer from low accuracy and sensitivity, particularly in early-stage detection, leading to false positives and inadequate detection rates.
The use of specific microRNAs, including hsa-miR-129-1-3p, hsa-miR-566, and hsa-miR-598-5p, as markers for colorectal cancer diagnosis, with a preferred combination of hsa-miR-129-1-3p and hsa-miR-566, to measure expression levels in human body fluids and standardize against reference values for accurate detection.
Enables highly accurate determination of colorectal cancer presence or absence and sensitive detection of early-stage colorectal cancer, improving diagnostic accuracy and reducing false positives.
Smart Images

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Abstract
Description
[Technical field]
[0001] The present invention relates to a marker for diagnosing colon cancer, a method for assisting in the diagnosis of colon cancer, a method for collecting data for the diagnosis of colon cancer, a diagnostic kit for colon cancer, a therapeutic agent for colon cancer, a method for treating colon cancer, and a method for diagnosing colon cancer. This application claims priority based on Japanese Patent Application No. 2019-149338, filed on August 16, 2019, the contents of which are incorporated herein by reference. [Background technology]
[0002] Known methods for checking for the presence or absence of colorectal cancer include lower gastrointestinal endoscopy and fecal occult blood testing (e.g., Non-Patent Documents 1 and 2). Lower gastrointestinal endoscopy takes a long time, is highly invasive, and is expensive. For this reason, lower gastrointestinal endoscopy is not recommended as a medical examination or screening test for healthy individuals. For these reasons, fecal occult blood tests are often performed during colon cancer screening. Additionally, CEA (carcinoembryonic antigen) and CA19-9 (carbohydrate antigen 19-9) are known as biomarkers for colorectal cancer. [Prior art documents] [Non-patent literature]
[0003] [Non-Patent Document 1] National Cancer Center "Cancer Information Service" (URL: https: / / ganjoho.jp / med_pro / pre_scr / screening / screening_colon.html, accessed July 12, 2019) [Non-Patent Document 2] Igaku Shoin "Weekly Medical World Newspaper, No. 2940, August 8, 2011" (URL: http: / / www.igaku-shoin.co.jp / paperDetail.do?id=PA02940_05, Accessed: July 12, 2019) Summary of the Invention [Problem to be solved by the invention]
[0004] However, the fecal occult blood test has a high probability of misidentifying a healthy subject as having colorectal cancer, i.e., a high probability of false positives, and therefore the fecal occult blood test is insufficient in accuracy in determining whether or not a subject has colorectal cancer. In addition, Non-Patent Document 2 describes that the detection rate of colon cancer in early stages by immunological occult blood reaction is 30 to 40%. Thus, there is a problem that the detection sensitivity is extremely low even in actual clinical practice. Even with conventional biomarkers such as CEA and CA19-9, the detection rate of colorectal cancer is low and the detection sensitivity is insufficient.
[0005] The present invention provides a colon cancer diagnostic marker that enables highly accurate determination of the presence or absence of colon cancer and highly sensitive detection of early-stage colon cancer. [Means for solving the problem]
[0006] The first aspect of the present invention includes the following aspects [1] to
[13] . [1] A marker for diagnosing colorectal cancer, which is at least one microRNA selected from the group consisting of hsa-miR-129-1-3p, hsa-miR-566, and hsa-miR-598-5p. [2] The colorectal cancer diagnostic marker according to [1], wherein the microRNA is a combination of hsa-miR-129-1-3p and hsa-miR-566. [3] A diagnostic marker for colorectal cancer as defined in [1] or [2] contained in human body fluids. [4] A method for assisting in the diagnosis of colorectal cancer, comprising measuring the expression level of any one of the colorectal cancer diagnostic markers [1] to [3] in a sample collected from a subject, and comparing the expression level with a reference value. [5] The method according to [4], wherein the expression level is standardized using the following miRNA in the sample as a standardization factor to compare the expression level with a reference value: miRNA: hsa-miR-4669 and / or hsa-miR-6756-5p. [6] The method according to [4] or [5], wherein the stage of the colorectal cancer is stage 0 or stage I. [7] A method for collecting data for diagnosing colorectal cancer, comprising measuring the expression level of any one of the colorectal cancer diagnostic markers [1] to [3] in a sample collected from a subject. [8] The method according to [7], wherein after measuring the expression level, the expression level is standardized using the following miRNA in the sample as a standardization factor: miRNA: hsa-miR-4669 and / or hsa-miR-6756-5p. [9] The method according to [7] or [8], wherein the stage of the colorectal cancer is stage 0 or stage I.
[10] A kit for use in diagnosing colorectal cancer, comprising a colorectal cancer diagnostic marker according to any one of [1] to [3] and a specific primer.
[11] The colon cancer diagnostic kit according to
[10] , further comprising at least one selected from the group consisting of an extraction reagent for extracting the microRNA from a sample, a cDNA synthesis reagent for synthesizing cDNA of the microRNA, a sample collection container, a standardization primer specific to the miRNA that serves as a standardization factor, a reverse transcriptase, a DNA polymerase, and an instruction manual.
[12] The colon cancer diagnostic kit according to
[10] or
[11] , wherein the stage of the colon cancer is stage 0 or stage I.
[13] A therapeutic agent for colorectal cancer, comprising an inhibitor of at least one microRNA selected from the group consisting of hsa-miR-129-1-3p, hsa-miR-566, and hsa-miR-598-5p.
[0007] The second aspect of the present invention includes the aspects described in the above items [1] to
[13] , as well as the following aspects <<1>> to <<23>>. <1> A diagnostic marker for colorectal cancer, which is at least one microRNA selected from the group consisting of hsa-miR-129-1-3p, hsa-miR-566, and hsa-miR-598-5p. <2> The colon cancer diagnostic marker according to <1>, wherein the microRNA is a combination of hsa-miR-129-1-3p and hsa-miR-566. <3> A diagnostic marker for colon cancer <1> or <2> contained in human body fluid. <4> A method for diagnosing colorectal cancer, comprising measuring an expression level of any one of the colorectal cancer diagnostic markers <1> to <3> in a sample collected from a subject, and comparing the expression level with a reference value. <5> The method for diagnosing colorectal cancer according to <4>, wherein the expression level is standardized using miRNA in the sample as a standardization factor to compare the expression level with a reference value. <6> The method for diagnosing colorectal cancer according to <5>, wherein the miRNA is either one or both of hsa-miR-4669 and hsa-miR-6756-5p. <7> The method for diagnosing colon cancer according to any one of <4> to <6>, wherein the stage of the colon cancer is stage 0 or stage I. <8> A method for treating colorectal cancer, comprising diagnosing a subject using any one of the colorectal cancer diagnostic methods <4> to <7>, and administering a therapeutic drug for colorectal cancer to the subject if the subject is diagnosed as having colorectal cancer. <9> A method for treating colorectal cancer, comprising diagnosing a subject using any one of the colorectal cancer diagnostic methods <4> to <7>, and performing surgery on the subject if the subject is diagnosed as having colorectal cancer. <10> A method for determining the presence or absence of colon cancer, comprising measuring the expression level of any one of the colon cancer diagnostic markers <1> to <3> in a sample collected from a subject, and comparing the expression level with a standard value. <11> The method for determining colorectal cancer according to <10>, wherein the expression level is standardized using miRNA in the sample as a standardization factor to compare the expression level with a reference value. <12> The method for determining colon cancer according to <11>, wherein the miRNA is either one or both of hsa-miR-4669 and hsa-miR-6756-5p. <13> The method for determining colon cancer according to any one of <10> to <12>, wherein the stage of the colon cancer is stage 0 or stage I. <14> A method for treating colorectal cancer, comprising determining whether or not a subject is affected with colorectal cancer using any of the colorectal cancer determination methods <10> to <13>, and administering a therapeutic drug for colorectal cancer to the subject when it is determined that the subject is affected with colorectal cancer. <15> A method for treating colorectal cancer, comprising determining whether or not a subject is affected with colorectal cancer using any of the colorectal cancer determination methods <10> to <13>, and performing surgery on the subject when it is determined that the subject is affected with colorectal cancer. <16> A method for testing the presence or absence of colon cancer, comprising measuring the expression level of any one of the colon cancer diagnostic markers <1> to <3> in a sample collected from a subject, and comparing the expression level with a standard value. <17> The colorectal cancer testing method according to <16>, further comprising standardizing the expression level using miRNA in the sample as a standardization factor to compare the expression level with a reference value. <18> The method for testing colon cancer according to <17>, wherein the miRNA is either one or both of hsa-miR-4669 and hsa-miR-6756-5p. <19> The method for testing colon cancer according to any one of <16> to <18>, wherein the stage of the colon cancer is stage 0 or stage I. <20> A method for treating colorectal cancer, comprising testing a subject for the presence or absence of colorectal cancer using any of the colorectal cancer testing methods <16> to <19>, and administering a therapeutic drug for colorectal cancer to the subject if it is determined that the subject is affected with colorectal cancer. <21> A method for treating colorectal cancer, comprising testing a subject for the presence or absence of colorectal cancer using any of the colorectal cancer testing methods <16> to <19>, and performing surgery on the subject if it is determined that the subject is affected with colorectal cancer. <22> A therapeutic agent for colon cancer, comprising an inhibitor of at least one microRNA selected from the group consisting of hsa-miR-129-1-3p, hsa-miR-566, and hsa-miR-598-5p. <23> A method for treating colorectal cancer, comprising inhibiting at least one microRNA selected from the group consisting of hsa-miR-129-1-3p, hsa-miR-566, and hsa-miR-598-5p in a subject. Effect of the Invention
[0008] According to the present invention, there is provided a colon cancer diagnostic marker that enables highly accurate determination of the presence or absence of colon cancer and highly sensitive detection of early-stage colon cancer. [Brief description of the drawings]
[0009] [Figure 1] FIG. 1 is a diagram showing an outline of verification of an embodiment. [Diagram 2] FIG. 1 shows the results of miRNA array analysis in cohort 1. [Diagram 3] FIG. 1 shows ROC curves for each colon cancer diagnostic marker in cohort 2. [Figure 4] FIG. 1 shows ROC curves for each colon cancer diagnostic marker in cohort 3. [Diagram 5] FIG. 13 shows the expression levels of hsa-miR-129-1-3p in cohort 4, comparing healthy subjects with stage 0 or stage I colon cancer patients. [Figure 6] FIG. 13 shows the expression levels of hsa-miR-566 in cohort 4, comparing healthy subjects with stage 0 or stage I colon cancer patients. [Figure 7] FIG. 13 shows ROC curves for each colon cancer diagnostic marker in cohort 4. [Figure 8] FIG. 13 shows a comparison of the expression levels of hsa-miR-129-1-3p in normal tissues and colon cancer tissues in an analysis using formalin-fixed, paraffin-embedded tissues. [Figure 9] FIG. 13 shows a comparison of the expression levels of hsa-miR-566 in normal tissues and colon cancer tissues in an analysis using formalin-fixed, paraffin-embedded tissues. [Figure 10] The figure plots the expression levels of hsa-miR-129-1-3p (2-△Ct) on the vertical axis and the expression levels of hsa-miR-566 (2-△Ct) on the horizontal axis for SW480 and HCT116 in (i) exosomes in the culture medium, (ii) culture medium, and (iii) cell bodies. [Figure 11] These are photographs used to evaluate the cell motility of SW480 and HCT116. [Figure 12] This is a graph used to evaluate the cell motility of SW480 and HCT116. [Figure 13] FIG. 1 shows the results of gene ontology analysis. [Figure 14] FIG. 1 shows the results of gene ontology analysis. DETAILED DESCRIPTION OF THE PREFERRED EMBODIMENTS
[0010] In the specification and claims, the following terms have the meanings set forth in this paragraph. "hsa-miR-129-1-3p" refers to the hsa-miR-129-1-3p gene set forth in SEQ ID NO: 1 (miRBase Accession No. MIMAT0004548), and includes homologs or orthologs of species other than humans. "hsa-miR-566" refers to the hsa-miR-566 gene set forth in SEQ ID NO: 2 (miRBase Accession No. MIMAT0003230), and includes homologs or orthologs of organisms other than humans. "hsa-miR-598-5p" refers to the hsa-miR-598-5p gene (miRBase Accession No. MIMAT0026620) set forth in SEQ ID NO: 3, and includes homologs or orthologs of organisms other than humans. "hsa-miR-4669" refers to the hsa-miR-4669 gene set forth in SEQ ID NO: 4 (miRBase Accession No. MIMAT0019749), and includes homologs or orthologs of species other than humans. "hsa-miR-6756-5p" refers to the hsa-miR-6756-5p gene (miRBase Accession No. MIMAT0027412) set forth in SEQ ID NO: 5, and includes homologs or orthologs of organisms other than humans. The term "primer" refers to a nucleotide that forms a complementary pair with either or both of DNA and RNA.
[0011] As used herein, the following terms have the meanings set forth in this paragraph. By "mutant" is meant a naturally occurring variant resulting from polymorphism, mutation, etc.; a variant including a deletion, substitution, addition, or insertion of one or more bases. The term "derivative" refers to a derivative labeled with a fluorescent group, a radioisotope, or the like; a modified nucleotide having an organic functional group; a nucleotide that has undergone base rearrangement, double bond saturation, deamination, substitution of an oxygen molecule with a sulfur molecule, or the like, etc. However, the derivative is not limited to these examples. "Subject" refers to primates, such as humans, chimpanzees, etc.; mammals, such as rodents, such as mice, rats, etc.; pets, such as dogs, cats, etc.; and livestock, such as cows, horses, sheep, goats, etc. "Subject" refers to a human subject. The terms "healthy subject" and "healthy individual" refer to a subject organism that is not afflicted with colon cancer. "Accuracy" means the value of ((number of true positives) + (number of true negatives)) / (total number of samples). "Sensitivity" refers to the value of (number of true positives) / ((number of true positives) + (number of false negatives)). The higher the sensitivity, the easier it is to detect colorectal cancer early, which contributes to complete resection of cancerous areas and a lower recurrence rate. "Specificity" means (number of true negatives) / ((number of true negatives) + (number of false positives)). The higher the specificity, the easier it is to prevent healthy individuals from being mistaken for colorectal cancer patients, preventing the need for unnecessary additional testing, reducing the burden on patients, and contributing to reducing medical costs. The acts specified by the terms "examination," "evaluation," and "test" do not include medical procedures performed by physicians (e.g., diagnosing a human disease, treating a human disease, etc.) in Japan and in countries where medical procedures are excluded from patentability. The symbol "~" indicating a range of values means that the values before and after it are included as the lower and upper limits.
[0012] <Colon cancer diagnostic marker> The colon cancer diagnostic marker of the present invention is at least one microRNA selected from the group consisting of hsa-miR-129-1-3p, hsa-miR-566, and hsa-miR-598-5p. That is, the colon cancer diagnostic marker of the present invention is one microRNA or a combination of two or more microRNAs selected from the group consisting of hsa-miR-129-1-3p, hsa-miR-566, and hsa-miR-598-5p. The microRNA may further contain at least one selected from the group consisting of mutants and derivatives of hsa-miR-129-1-3p, mutants and derivatives of hsa-miR-566, and mutants and derivatives of hsa-miR-598-5p, as long as it does not impair the effects of the present invention.
[0013] As a combination of microRNAs, the combination of hsa-miR-129-1-3p and hsa-miR-566 is preferable because it further improves the accuracy, sensitivity, and specificity when determining the presence or absence of colon cancer. In addition, when the combination of microRNAs is the combination of hsa-miR-129-1-3p and hsa-miR-566, a remarkable effect of excellent sensitivity and specificity when determining the presence or absence of colon cancer can be obtained even when the colon cancer is stage 0 or stage I.
[0014] Hsa-miR-129-1-3p can be identified, for example, by the method described in RNA.9:175-179(2003). As a precursor of hsa-miR-129-1-3p, hsa-miR-129-1 stem-loop (miRBase Accession No.MI0000252, SEQ ID NO:6) is known. Hsa-miR-129-1 stem-loop has a stem-loop structure.
[0015] Hsa-miR-566 can be identified, for example, by the method described in Proc Natl Acad Sci USA.103:3687-3692(2006). As a precursor of hsa-miR-566, hsa-miR-566 stem-loop (miRBase Accession No.MI0003572, SEQ ID NO:7) is known. Hsa-miR-566 stem-loop has a stem-loop structure.
[0016] Hsa-miR-598-5p can be identified, for example, by the method described in Proc Natl Acad Sci USA.103:3687-3692(2006). As a precursor of hsa-miR-598-5p, hsa-miR-598 stem-loop (miRBase Accession No.MI0003610, SEQ ID NO:8) is known. Hsa-miR-598-5p stem-loop has a stem-loop structure.
[0017] The colon cancer diagnostic marker of the present invention is preferably contained in a human body fluid. When the colon cancer diagnostic marker is contained in a human body fluid, the test is non-invasive and simple. In addition, there is an advantage that the colon cancer test can be performed at a place other than a medical institution, such as at home. Specific examples of body fluids include blood, milk, urine, saliva, lymph, cerebrospinal fluid, amniotic fluid, tears, sweat, nasal discharge, feces, etc. However, body fluids are not limited to these examples. Among these, urine is preferred as the body fluid because it is easy to collect. The body fluid may be a pretreated fluid obtained by removing unnecessary components from each of the body fluids mentioned above, or a culture fluid obtained by culturing cells contained in each of the body fluids mentioned above.
[0018] (Mechanism of action) As shown in the Examples below, the above-described colon cancer diagnostic markers of the present invention are expressed at significantly higher levels in colon cancer patients than in healthy individuals. Therefore, by measuring the expression level of the colon cancer diagnostic marker in a sample collected from a subject and comparing the measured value with a reference value to evaluate the level, it is possible to determine whether or not the subject is affected by colon cancer. In addition, as shown in the Examples below, the colon cancer diagnostic marker of the present invention also tends to be significantly highly expressed in a group of patients with early stage colon cancer, such as stage 0 or stage I. Therefore, according to the colon cancer diagnostic marker of the present invention, even when the stage of colon cancer is stage 0 or stage I, the presence or absence of colon cancer can be determined with excellent sensitivity and specificity.
[0019] (Application) The colon cancer diagnostic markers of the present invention described above can be applied to, for example, the methods for assisting in the diagnosis of colon cancer, methods for evaluating the possibility of having colon cancer, methods for diagnosing colon cancer, methods for testing for colon cancer, methods for testing the possibility of having colon cancer, methods for collecting data for diagnosing colon cancer, in vitro methods for assisting in the diagnosis of colon cancer, and diagnostic kits for colon cancer, which will be described later. In addition to the above-mentioned uses, the colon cancer diagnostic marker of the present invention can also be applied to a method for diagnosing colon cancer, a method for determining colon cancer, a method for testing colon cancer, and a method for treating colon cancer. The use of the colon cancer diagnostic marker of the present invention will be described in detail in the section <Method for assisting in the diagnosis of colon cancer> below.
[0020] <Method of aiding in the diagnosis of colorectal cancer> The method for assisting in the diagnosis of colon cancer of the present invention provides a material for assisting in the diagnosis of whether or not a subject is affected with colon cancer. Colon cancer may be diagnosed based on the material.
[0021] In the method for assisting in the diagnosis of colon cancer of the present invention, the expression level of the colon cancer diagnostic marker of the present invention in a sample collected from a subject is measured, and then the expression level of the colon cancer diagnostic marker is compared with a reference value.
[0022] The method of collecting a sample from a subject is not particularly limited. For example, any method that can collect various body fluids as described above in the section <Colon cancer diagnostic marker> is not particularly limited. For example, when urine is used as the body fluid, a method used in a general urine test may be used. When other body fluids are used, a method used in a general test may be used.
[0023] As shown in the Examples below, the inventors of the present invention have found that a specific microRNA, which is a marker for diagnosing colon cancer according to the present invention, is expressed at a significantly higher level in colon cancer patients compared to healthy subjects. Therefore, by evaluating whether the expression level of the colon cancer diagnostic marker of the present invention is higher than a certain reference value, colon cancer can be detected, and it can be determined whether a subject is affected with colon cancer.
[0024] The expression level of a colon cancer diagnostic marker can be measured, for example, by quantitative RT (Reverse Transcription)-PCR. Quantitative RT-PCR of colon cancer diagnostic markers can be carried out, for example, according to the following method (1). Method (1): A reverse transcription reaction of a colon cancer diagnostic marker is carried out, and then quantitative PCR is carried out using the template DNA (1) obtained by the reverse transcription reaction.
[0025] In the method (1), first, a microRNA in a sample collected from a subject, i.e., a colorectal cancer diagnostic marker, is reverse transcribed. Here, the microRNA is at least one selected from the group consisting of hsa-miR-129-1-3p, hsa-miR-566, and hsa-miR-598-5p. These microRNAs are mature microRNAs (mature miRNAs) after processing. Therefore, it is preferable to use the following primer A1 in the reverse transcription of a diagnostic marker for colon cancer. · Primer A1: Looped RT primer specific for a diagnostic marker for colon cancer.
[0026] Primer A1 is not particularly limited as long as it specifically binds to at least one selected from the group consisting of hsa-miR-129-1-3p, hsa-miR-566, and hsa-miR-598-5p to form a stem-loop structure. Primer A1 has a loop structure. When primer A1 binds to the colon cancer diagnostic marker, a stem-loop structure is formed. This stem-loop structure is recognized by reverse transcriptase, and the reverse transcription reaction of the colon cancer diagnostic marker proceeds. The reverse transcription reaction synthesizes template DNA (1) of the colon cancer diagnostic marker. The reverse transcriptase used in the reverse transcription reaction is not particularly limited. Reverse transcriptases generally used in laboratories can be used. Recombinant proteins may also be used as reverse transcriptases.
[0027] Next, quantitative PCR is carried out using the template DNA (1) of the colon cancer diagnostic marker obtained by reverse transcription of the colon cancer diagnostic marker. In the quantitative PCR, it is preferable to use the following two types of primers A2 and A3. Primer A2: A forward primer that specifically binds to the template DNA (1). Primer A3: Reverse primer that specifically binds to the template DNA (1). By carrying out quantitative PCR using these primers A2 and A3, the expression level of the colon cancer diagnostic marker can be measured from the template DNA (1) of the colon cancer diagnostic marker. The DNA polymerase used in quantitative PCR is not particularly limited. Any DNA polymerase commonly used in laboratories can be used. Recombinant proteins may be used as DNA polymerase.
[0028] Primer A1, primer A2, and primer A3 can be prepared by general nucleic acid synthesis and nucleotide synthesis. For example, they can be obtained from a company that undertakes custom synthesis of nucleic acids. In addition, TaqMan Advanced MicroRNA Assay (Thermo Fisher Scientific, USA) can be used as a commercially available kit for detecting colon cancer diagnostic markers. Therefore, a person skilled in the art can obtain primer A1, primer A2, and primer A3 by a conventional method without excessive burden, and can confirm the expression level of the colon cancer diagnostic marker.
[0029] For example, the catalog number of the TaqMan Advanced MicroRNA Assay containing the following primers A11, A21, and A31 is A25576, and its Assay ID is 480873_mir. Primer A11: Looped RT primer that specifically binds to hsa-miR-129-1-3p. Primer A21: Forward primer that specifically binds to the template DNA (1) of hsa-miR-129-1-3p. Primer A31: Reverse primer that specifically binds to the template DNA (1) of hsa-miR-129-1-3p.
[0030] For example, the catalog number of the TaqMan Advanced MicroRNA Assay containing the following primers A12, A22, and A32 is A25576, and its Assay ID is 479373_mir. Primer A12: Looped RT primer that specifically binds to hsa-miR-566. Primer A22: Forward primer that specifically binds to the template DNA (1) of hsa-miR-566. Primer A32: Reverse primer that specifically binds to the template DNA (1) of hsa-miR-566.
[0031] For example, the catalog number of the TaqMan Advanced MicroRNA Assay containing the following primers A13, A23, and A33 is A25576, and its Assay ID is 479080_mir. Primer A13: Looped RT primer that specifically binds to hsa-miR-598-5p. Primer A23: Forward primer that specifically binds to the template DNA (1) of hsa-miR-598-5p. Primer A33: Reverse primer that specifically binds to the template DNA (1) of hsa-miR-598-5p.
[0032] In the method for assisting in the diagnosis of colon cancer of the present invention, the expression level of microRNA can be calculated based on the cutoff value of the cycle number in quantitative PCR. In quantitative PCR, if the amount of nucleic acid to be measured in a sample is relatively large, the number of cycles until the amount of amplified nucleic acid reaches a certain value is relatively short.On the other hand, if the amount of nucleic acid to be measured in a sample is relatively small, the number of cycles until the amount of amplified nucleic acid reaches a certain value is long, and the cutoff value is large.The number of cycles until the amount of amplified nucleic acid reaches a certain threshold is set as the cutoff value, and the amount of the nucleic acid to be measured is calculated using a calibration curve. The threshold value of the amount of amplification of nucleic acid involved in determining the cutoff value can be set appropriately depending on conditions such as the age and sex of the subject, the amount of total RNA in the sample collected, the type of colon cancer diagnostic marker used, the collection method, and the type of sample.
[0033] In the method for assisting in the diagnosis of colon cancer of the present invention, in order to compare the expression level of the colon cancer diagnostic marker with a reference value, it is preferable to standardize the expression level of the colon cancer diagnostic marker using miRNA in a sample as a standardization factor. By standardizing the expression level of the colon cancer diagnostic marker, the relative magnitude of the expression level of the colon cancer diagnostic marker can be determined more accurately, and the presence or absence of colon cancer can be determined with higher accuracy.
[0034] As the miRNA used as the normalization factor, either one or both of hsa-miR-4669 and hsa-miR-6756-5p are preferable, and the combination of hsa-miR-4669 and hsa-miR-6756-5p is more preferable. The inventors of the present invention found that hsa-miR-4669 and hsa-miR-6756-5p are constitutively expressed in the urine of organisms such as humans, and that their expression levels are stable. Thus, because the expression levels of hsa-miR-4669 and hsa-miR-6756-5p are stable, they are useful as standardization factors for the colorectal cancer diagnostic markers of the present invention contained in body fluids collected from subjects. In addition, hsa-miR-4669 and hsa-miR-6756-5p are also useful as normalization factors for any miRNA contained in a body fluid collected from a subject. Hsa-miR-4669 and hsa-miR-6756-5p as normalization factors may further contain at least one selected from the group consisting of hsa-miR-4669 mutants and derivatives, and hsa-miR-6756-5p mutants and derivatives, as long as it does not impair the effects of the present invention.
[0035] hsa-miR-4669 can be identified, for example, by the method described in Cancer Res. 71: 78-86 (2011). As a precursor of hsa-miR-4669, hsa-miR-4669 stem-loop (miRBase Accession No. MI0017300, SEQ ID NO: 9) is known. hsa-miR-4669 stem-loop has a stem-loop structure. hsa-miR-6756-5p can be identified, for example, by the method described in Genome Res. 22: 1634-1645 (2012). As a precursor of hsa-miR-6756-5p, hsa-miR-6756 stem-loop (miRBase Accession No. MI0022601, SEQ ID NO: 10) is known. hsa-miR-6756 stem-loop has a stem-loop structure.
[0036] In the method of the present invention for assisting in the diagnosis of colon cancer, when the expression level of the colon cancer diagnostic marker is standardized using miRNA in a sample as a standardization factor, the expression level of the colon cancer diagnostic marker may be calculated based on the following ΔCt. By using ΔCt, the expression level of the colon cancer diagnostic marker can be calculated by multiplying the expression level by 2. -△Ct It can be quantified as: ΔCt: the cutoff value of the colorectal cancer diagnostic marker minus the cutoff value of the standardization factor.
[0037] By using the △Ct value, the expression level of the colorectal cancer diagnostic marker for each sample can be evaluated. -△Ct was used as a measurement of the expression level of each colon cancer diagnostic marker, and 2 -△CtBy comparing this with the reference value, it is possible to easily determine whether or not the subject is affected by colon cancer. Here, in colon cancer patients, the colon cancer diagnostic marker is relatively highly expressed, so the -△Ct value is relatively large, and -△Ct On the other hand, in healthy subjects, the -△Ct value is relatively small, and -△Ct The value of becomes relatively small. In this case, if the △Ct index in healthy subjects is known, the 2 -△Ct can be used as a reference value.
[0038] The cutoff value of the normalization factor for the ΔCt value can be the average cutoff value of hsa-miR-4669 and hsa-miR-6756-5p in samples collected from the subject. The expression level of the miRNA used as the normalization factor can be measured, for example, by quantitative PCR. Specifically, for example, the expression levels of hsa-miR-4669 and hsa-miR-6756-5p can be calculated based on the cutoff value of the cycle number in quantitative PCR of the normalization factor.
[0039] Quantitative PCR of the normalization factor can be carried out, for example, according to the following method (2). Method (2): A reverse transcription reaction of a standardization factor is carried out, and then quantitative PCR is carried out using the template DNA (2) obtained by the reverse transcription reaction.
[0040] In the method (2), first, miRNA in a sample collected from a subject, i.e., a normalization factor, is reverse transcribed. Here, the miRNA is at least one selected from the group consisting of hsa-miR-4669 and hsa-miR-6756-5p. These miRNAs are mature miRNAs after processing. Therefore, it is preferable to use the following primer B1 for reverse transcription of the normalization factor. Primer B1: Looped RT primer specific for the normalization factor.
[0041] Primer B1 is not particularly limited as long as it specifically binds to at least one selected from the group consisting of hsa-miR-4669 and hsa-miR-6756-5p to form a stem-loop structure. Primer B1 has a loop structure. When primer B1 binds to the standardization factor, a stem-loop structure is formed. This stem-loop structure is recognized by reverse transcriptase, and the reverse transcription reaction of the standardization factor proceeds. The template DNA (2) of the standardization factor is synthesized by the reverse transcription reaction. The reverse transcriptase used in the reverse transcription reaction is not particularly limited. Reverse transcriptases generally used in laboratories can be used. Recombinant proteins may also be used as reverse transcriptases.
[0042] Next, quantitative PCR is carried out using the template DNA (2) of the standardization factor obtained by reverse transcription of the standardization factor. In the quantitative PCR, it is preferable to use the following two types of primers, primer B2 and primer B3. Primer B2: Forward primer that specifically binds to template DNA (2). Primer B3: Reverse primer that specifically binds to the template DNA (2). By performing quantitative PCR using these primers B2 and B3, the expression level of the normalization factor can be measured from the template DNA (2) of the normalization factor. The DNA polymerase used in quantitative PCR is not particularly limited. Any DNA polymerase commonly used in laboratories can be used. Recombinant proteins may be used as DNA polymerase.
[0043] Primer B1, primer B2, and primer B3 can be prepared by general nucleic acid synthesis and nucleotide synthesis. For example, they can be obtained from a company that undertakes custom synthesis of nucleic acids. In addition, TaqMan Advanced MicroRNA Assay can be used as a commercially available kit for detecting the standardization factor. Therefore, a person skilled in the art can obtain primer B1, primer B2, and primer B3 by a conventional method without excessive burden, and can confirm the expression level of the standardization factor.
[0044] For example, the catalog number of the TaqMan Advanced MicroRNA Assay containing the following primers B11, B21, and B31 is A25576, and its Assay ID is 478925_mir. Primer B11: Looped RT primer that specifically binds to hsa-miR-4669. Primer B21: A forward primer that specifically binds to the template DNA (2) of hsa-miR-4669. Primer B31: Reverse primer that specifically binds to the template DNA (2) of hsa-miR-4669.
[0045] For example, the catalog number of the TaqMan Advanced MicroRNA Assay containing the following primers B12, B22, and B32 is A25576, and its Assay ID is 480284_mir. Primer B12: Looped RT primer that specifically binds to hsa-miR-6756-5p. Primer B22: Forward primer that specifically binds to the template DNA (2) of hsa-miR-6756-5p. Primer B32: Reverse primer that specifically binds to the template DNA (2) of hsa-miR-6756-5p.
[0046] Next, in the method for assisting in the diagnosis of colon cancer of the present invention, the expression level of the colon cancer diagnostic marker is compared with a reference value. By comparing the expression level of the colon cancer diagnostic marker with the reference value, it is possible to determine whether or not the subject is affected with colon cancer. When the expression level of the colon cancer diagnostic marker in a sample is relatively high compared to the expression level of the colon cancer diagnostic marker in a healthy subject, the subject can be determined to be affected by colon cancer. The reference value is considered to be a value at which a colorectal cancer diagnosis marker is suspected when the value is equal to or higher than this value. When determining the reference value, the expression level of the colorectal cancer diagnosis marker in a healthy subject may be used as a reference. Usually, the reference value is the expression level of the colorectal cancer diagnosis marker in a healthy subject.
[0047] When the expression level of the colon cancer diagnostic marker obtained by the measurement is higher than the reference value, the subject is determined to have colon cancer, whereas when the expression level of the colon cancer diagnostic marker obtained by the measurement is lower than the reference value, the subject is determined to not have colon cancer. The reference value used for the discrimination can be appropriately set depending on conditions such as the age and sex of the subject, the type of colon cancer diagnostic marker used, the collection method, and the type of specimen.
[0048] When determining the reference value, it is preferable to standardize the expression level of the colon cancer diagnostic marker in a healthy subject using miRNA in a sample collected from the healthy subject as a standardization factor, and to use the standardized expression level of the colon cancer diagnostic marker in the healthy subject as the reference value. By using the standardized expression level of a colon cancer diagnostic marker in a healthy subject as a reference value, it becomes easier to more accurately determine the relative level of expression of the colon cancer diagnostic marker in colon cancer testing, and the presence or absence of colon cancer can be determined with even greater accuracy. The colorectal cancer diagnostic marker in a healthy subject can be measured in the same manner as in the above-mentioned method (1). The expression level of the standardization factor in a healthy subject can be measured in the same manner as in the above-mentioned method (2). The standard value is calculated based on the following △Ct': -△Ct’ It can be set as: - △Ct': the cutoff value of the colorectal cancer diagnostic marker in healthy subjects minus the cutoff value of the standardization factor in healthy subjects.
[0049] In this way, in the method of assisting in the diagnosis of colon cancer of the present invention, the expression level of the colon cancer diagnostic marker of the present invention is compared with a reference value. As shown in the Examples described later, the colon cancer diagnostic marker of the present invention can distinguish early stage colon cancer patients (stage 0 or stage I) from healthy subjects with high accuracy. Therefore, according to the method of the present invention for assisting in the diagnosis of colon cancer, even when the stage of colon cancer is stage 0 or stage I, the test accuracy, test sensitivity and specificity in determining the presence or absence of colon cancer are excellent.
[0050] <How to assess the possibility of having colon cancer> In the method of the present invention for evaluating the possibility of being affected by colon cancer, the expression level of the colon cancer diagnostic marker of the present invention in a sample collected from a subject is measured, and the expression level is compared with a reference value. The method of the present invention for evaluating the possibility of colon cancer can potentially provide information for diagnosing whether or not a subject has colon cancer. Colon cancer may be diagnosed based on the information. The details and preferred embodiments of the measurement of the expression level of a colon cancer diagnostic marker can be the same as those described above in the section <Method for assisting in the diagnosis of colon cancer>. The specific content of the standard value, details of the comparison of the expression level of the colon cancer diagnostic marker with the standard value, and preferred aspects can be the same as those described in the above section <Method for assisting in the diagnosis of colon cancer>.
[0051] In the method of the present invention for evaluating the possibility of colon cancer, the expression level of the colon cancer diagnostic marker of the present invention is compared with a reference value. As shown in the Examples below, the colon cancer diagnostic marker of the present invention can distinguish early stage colon cancer patients (stage 0 or stage I) from healthy subjects with high accuracy. Therefore, according to the method of the present invention for evaluating the possibility of having colon cancer, even when the stage of colon cancer is stage 0 or stage I, the possibility of having colon cancer can be evaluated with high accuracy.
[0052] <Methods for diagnosing colon cancer> In the method for diagnosing colon cancer of the present invention, the expression level of the colon cancer diagnostic marker of the present invention in a sample collected from a subject is measured, and the expression level is compared with a reference value. The method for diagnosing colon cancer of the present invention can provide information for diagnosing whether or not a subject is affected with colon cancer. Colon cancer may be diagnosed based on the information. The details and preferred embodiments of the measurement of the expression level of a colon cancer diagnostic marker can be the same as those described above in the section <Method for assisting in the diagnosis of colon cancer>. The specific content of the standard value, details of the comparison of the expression level of the colon cancer diagnostic marker with the standard value, and preferred aspects can be the same as those described in the above section <Method for assisting in the diagnosis of colon cancer>.
[0053] In the method for diagnosing colon cancer of the present invention, the expression level of the colon cancer diagnostic marker of the present invention is compared with a reference value. As shown in the Examples below, the colon cancer diagnostic marker of the present invention can distinguish early stage colon cancer patients (stage 0 or stage I) from healthy subjects with high accuracy. Therefore, according to the method for diagnosing colon cancer of the present invention, even when the stage of colon cancer is stage 0 or stage I, it is possible to provide effective information for diagnosing colon cancer with high accuracy.
[0054] <Colon cancer screening methods> In the colon cancer testing method of the present invention, the expression level of the colon cancer diagnostic marker of the present invention in a sample collected from a subject is measured, and the expression level is compared with a reference value. The colon cancer testing method of the present invention can provide information that aids in the diagnosis of whether or not a subject is affected with colon cancer. Colon cancer may be diagnosed based on the information. The details and preferred embodiments of the measurement of the expression level of a colon cancer diagnostic marker can be the same as those described above in the section <Method for assisting in the diagnosis of colon cancer>. The specific content of the standard value, details of the comparison of the expression level of the colon cancer diagnostic marker with the standard value, and preferred aspects can be the same as those described in the above section <Method for assisting in the diagnosis of colon cancer>.
[0055] In the colon cancer testing method of the present invention, the expression level of the colon cancer diagnostic marker of the present invention is compared with a reference value. As shown in the Examples described later, the colon cancer diagnostic marker of the present invention can distinguish early stage colon cancer patients (stage 0 or stage I) from healthy subjects with high accuracy. Therefore, according to the colon cancer testing method of the present invention, even when the stage of colon cancer is stage 0 or stage I, it is possible to provide effective information for diagnosing colon cancer with high accuracy.
[0056] <Method of testing for the possibility of colon cancer> In the method of the present invention for testing the possibility of colon cancer, the expression level of the colon cancer diagnostic marker of the present invention in a sample collected from a subject is measured, and the expression level is compared with a reference value. The method of the present invention for testing the possibility of colon cancer can potentially provide information for diagnosing whether or not a subject is suffering from colon cancer. Colon cancer may be diagnosed based on the information. The details and preferred embodiments of the measurement of the expression level of a colon cancer diagnostic marker can be the same as those described above in the section <Method for assisting in the diagnosis of colon cancer>. The specific content of the standard value, details of the comparison of the expression level of the colon cancer diagnostic marker with the standard value, and preferred aspects can be the same as those described in the above section <Method for assisting in the diagnosis of colon cancer>.
[0057] In the method of the present invention for testing the possibility of colon cancer, the expression level of the colon cancer diagnostic marker of the present invention is compared with a reference value. As shown in the Examples below, the colon cancer diagnostic marker of the present invention can distinguish early stage colon cancer patients (stage 0 or stage I) from healthy subjects with high accuracy. Therefore, according to the method of the present invention for testing the possibility of colon cancer, the possibility that a subject has colon cancer can be tested with high accuracy even if the stage of colon cancer is stage 0 or stage I.
[0058] <Method of collecting data for colon cancer diagnosis> In the method of the present invention for collecting data for diagnosing colon cancer, the expression level of the colon cancer diagnostic marker of the present invention in a sample collected from a subject is measured. The details and preferred embodiments of the measurement of the expression level of a colon cancer diagnostic marker can be the same as those described above in the section <Method for assisting in the diagnosis of colon cancer>.
[0059] According to the method of collecting data for diagnosing colon cancer of the present invention, information for diagnosing colon cancer with high accuracy can be obtained. The information obtained by the method of collecting data for the diagnosis of colorectal cancer of the present invention can be used for comparison with standard values, and thus the information is useful for providing information for diagnosing colorectal cancer. The specific content of the standard value, details of the comparison of the expression level of the colon cancer diagnostic marker with the standard value, and preferred aspects can be the same as those described in the above section <Method for assisting in the diagnosis of colon cancer>.
[0060] As shown in the Examples below, the colon cancer diagnostic marker of the present invention makes it possible to distinguish between early stage colon cancer patients (stage 0 or stage I) and healthy subjects with high accuracy. Therefore, according to the method of the present invention for collecting data for diagnosing colon cancer, it is possible to obtain useful information for diagnosing colon cancer with high accuracy by measuring the expression level of a marker for diagnosing colon cancer, even when the stage of colon cancer is stage 0 or stage I.
[0061] In Vitro Methods to Aid the Diagnosis of Colon Cancer In the in vitro method for assisting the diagnosis of colon cancer of the present invention, the expression level of the colon cancer diagnostic marker of the present invention in a sample collected from a subject is measured. The details and preferred embodiments of the measurement of the expression level of a colon cancer diagnostic marker can be the same as those described above in the section <Method for assisting in the diagnosis of colon cancer>.
[0062] According to the in vitro method for aiding in the diagnosis of colon cancer of the present invention, information for diagnosing colon cancer with high accuracy can be obtained. The information obtained by the in vitro method for aiding in the diagnosis of colorectal cancer of the present invention can be used for comparison with a reference value, and thus the information is useful for providing information for diagnosing colorectal cancer. The specific content of the standard value, details of the comparison of the expression level of the colon cancer diagnostic marker with the standard value, and preferred aspects can be the same as those described in the above section <Method for assisting in the diagnosis of colon cancer>.
[0063] As shown in the Examples below, the colon cancer diagnostic marker of the present invention makes it possible to distinguish between early stage colon cancer patients (stage 0 or stage I) and healthy subjects with high accuracy. Therefore, according to the in vitro method for assisting in the diagnosis of colon cancer of the present invention, by measuring the expression level of a colon cancer diagnostic marker, useful information can be obtained for diagnosing colon cancer with high accuracy even when the progression of colon cancer is stage 0 or stage I.
[0064] <Diagnosing method for colon cancer> In the method for diagnosing colon cancer of the present invention, the expression level of the colon cancer diagnostic marker of the present invention in a sample collected from a subject is measured, and the expression level is compared with a reference value. The method for diagnosing colon cancer of the present invention is a method for diagnosing whether or not a subject is affected by colon cancer. The details and preferred embodiments of the measurement of the expression level of a colon cancer diagnostic marker can be the same as those described above in the section <Method for assisting in the diagnosis of colon cancer>. The specific content of the standard value, details of the comparison of the expression level of the colon cancer diagnostic marker with the standard value, and preferred aspects can be the same as those described in the above section <Method for assisting in the diagnosis of colon cancer>.
[0065] In the method for diagnosing colon cancer of the present invention, the expression level of the colon cancer diagnostic marker of the present invention is compared with a reference value. As shown in the Examples described later, the colon cancer diagnostic marker of the present invention can distinguish early stage colon cancer patients (stage 0 or stage I) from healthy subjects with high accuracy. Therefore, according to the method for diagnosing colon cancer of the present invention, even when the stage of colon cancer is stage 0 or stage I, colon cancer can be diagnosed with high accuracy.
[0066] <How to diagnose colon cancer> In the method of the present invention for diagnosing colon cancer, the expression level of the marker for diagnosing colon cancer of the present invention in a sample collected from a subject is measured, and the expression level is compared with a reference value. The method for determining colon cancer of the present invention is a method for determining the presence or absence of colon cancer in a subject. The details and preferred embodiments of the measurement of the expression level of a colon cancer diagnostic marker can be the same as those described above in the section <Method for assisting in the diagnosis of colon cancer>. The specific content of the standard value, details of the comparison of the expression level of the colon cancer diagnostic marker with the standard value, and preferred aspects can be the same as those described in the above section <Method for assisting in the diagnosis of colon cancer>.
[0067] In the method of diagnosing colon cancer of the present invention, the expression level of the colon cancer diagnostic marker of the present invention is compared with a reference value. As shown in the Examples described later, the colon cancer diagnostic marker of the present invention can distinguish early stage colon cancer patients (stage 0 or stage I) from healthy subjects with high accuracy. Therefore, according to the method of the present invention for diagnosing colon cancer, even when the stage of colon cancer is stage 0 or stage I, colon cancer can be diagnosed with high accuracy.
[0068] <Colon cancer testing method> In the colon cancer testing method of the present invention, the expression level of the colon cancer diagnostic marker of the present invention in a sample collected from a subject is measured, and the expression level is compared with a reference value. The colon cancer testing method of the present invention is a method for testing the presence or absence of colon cancer in a subject. The details and preferred embodiments of the measurement of the expression level of a colon cancer diagnostic marker can be the same as those described above in the section <Method for assisting in the diagnosis of colon cancer>. The specific content of the standard value, details of the comparison of the expression level of the colon cancer diagnostic marker with the standard value, and preferred aspects can be the same as those described in the above section <Method for assisting in the diagnosis of colon cancer>.
[0069] In the colon cancer testing method of the present invention, the expression level of the colon cancer diagnostic marker of the present invention is compared with a reference value. As shown in the Examples below, the colon cancer diagnostic marker of the present invention can distinguish early stage colon cancer patients (stage 0 or stage I) from healthy subjects with high accuracy. Therefore, according to the colon cancer testing method of the present invention, even when the stage of colon cancer is stage 0 or stage I, it is possible to test with high accuracy whether or not a subject is affected by colon cancer.
[0070] <Colon cancer diagnostic kit> The colon cancer diagnostic kit of the present invention is a kit used for testing the presence or absence of colon cancer. The colon cancer diagnostic kit of the present invention comprises the colon cancer diagnostic marker of the present invention and a specific primer. Examples of the primers in the colon cancer diagnostic kit of the present invention include primer A1, primer A2, and primer A3 described above in the section <Method for assisting in the diagnosis of colon cancer>. The primers in the colon cancer diagnostic kit can specifically form a complementary pair with the colon cancer diagnostic marker of the present invention. Details and preferred embodiments of primer A1, primer A2, and primer A3 can be the same as those described above in the section <Method for assisting in the diagnosis of colon cancer>.
[0071] The colon cancer diagnostic kit of the present invention may further comprise at least one selected from the group consisting of an extraction reagent for extracting microRNA, which is a colon cancer diagnostic marker, from a sample, a cDNA synthesis reagent for synthesizing cDNA of the microRNA, a sample collection container, a primer specific to miRNA, which serves as a standardization factor, a reverse transcriptase, and an instruction manual.
[0072] The extraction reagent may be a general RNA extraction reagent. A specific example of a commercially available RNA extraction reagent is the miRNeasy Serum / Plasma Kit (Qiagen, USA). However, the extraction reagent is not limited to these examples.
[0073] The cDNA synthesis reagent is a reagent for synthesizing cDNA of microRNA, which is a marker for diagnosing colorectal cancer. An example of a commercially available cDNA synthesis reagent is TaqMan Advanced MicroRNA cDNA Synthesis Kit (ThermoFisher Scientific, USA). However, the cDNA synthesis reagent is not limited to this example. Reagents for cDNA synthesis may be used to synthesize cDNA for the miRNA to be used as the normalizer.
[0074] The sample collection container is not particularly limited as long as it is a container capable of containing the body fluid of the subject. For example, when the body fluid is urine, the sample collection container may be a general urine test container. Examples of the standardization primer include primer B1, primer B2, and primer B3 described above in the section <Method for assisting in the diagnosis of colon cancer>. The standardization primer can specifically form a complementary pair with the miRNA that serves as the standardization factor. Details and preferred embodiments of primer B1 and primer B2 can be the same as those described above in the section <Method for assisting in the diagnosis of colon cancer>.
[0075] Reverse transcriptase and DNA polymerase are reagents for quantifying microRNA, a colon cancer diagnostic marker, by RT-PCR. The colon cancer diagnostic marker can be quantified using the method (1) described above in the section <Method for assisting in the diagnosis of colon cancer>. The reverse transcriptase is not particularly limited as long as it is capable of reverse transcription of the colon cancer diagnostic marker of the present invention and capable of quantifying the colon cancer diagnostic marker. The reverse transcriptase may be used for reverse transcription and quantification of the miRNA used as the normalization factor. The reverse transcriptase is not particularly limited as long as it can be used in normal quantitative PCR.
[0076] The instruction manual for the colon cancer diagnostic kit of the present invention is a document that describes how to use the colon cancer diagnostic kit of the present invention. The instruction manual may further include information such as precautions for use, troubleshooting, and contact information. The information included in the instruction manual is not limited to these examples. In this way, the instruction manual only needs to include the minimum amount of information necessary to obtain the effects of the present invention, and there is no particular limit to the items to be included.
[0077] The method of using the colon cancer diagnostic kit of the present invention can be the same as that described in the above-mentioned <Method of assisting in the diagnosis of colon cancer>. For example, a method of using the primers in the colon cancer diagnostic kit of the present invention is to perform quantitative PCR, quantify microRNA, which is a colon cancer diagnostic marker, and compare the measured value with a reference value. However, the method of using the colon cancer diagnostic kit of the present invention is not limited to this example.
[0078] <Colon cancer treatment methods> In the colon cancer treatment method of the present invention, a subject is diagnosed, etc. using at least one selected from the group consisting of the above-mentioned method of the present invention for assisting in the diagnosis of colon cancer, the method for evaluating the possibility of having colon cancer, the method for diagnosing colon cancer, the method for testing for colon cancer, the method for testing the possibility of having colon cancer, the method for collecting data for diagnosing colon cancer, the in vitro method for assisting in the diagnosis of colon cancer, the diagnostic kit for colon cancer, the method for diagnosing colon cancer, the method for determining colon cancer, and the method for testing colon cancer. In one embodiment of the method for treating colon cancer of the present invention, when a subject is diagnosed as suffering from colon cancer, a therapeutic drug for colon cancer is administered to the subject. In one embodiment of the method for treating colon cancer of the present invention, when a subject is diagnosed as having colon cancer, surgery is performed on the subject. In one embodiment of the method for treating colon cancer of the present invention, at least one microRNA selected from the group consisting of hsa-miR-129-1-3p, hsa-miR-566, and hsa-miR-598-5p is inhibited in a subject. In the method for treating colon cancer of the present invention, the diagnosis of the subject may be a determination of the presence or absence of colon cancer in the subject, or a test of the presence or absence of colon cancer in the subject.
[0079] The therapeutic agent for colon cancer is not particularly limited. As the therapeutic agent for colon cancer, a drug whose efficacy and medicinal effect have been clinically confirmed is preferable. The therapeutic agent for colon cancer may be a therapeutic agent for colon cancer of the present invention described below, an anticancer agent, or a molecular targeted therapeutic agent, but is not limited to these examples. Examples of anticancer drugs include fluorouracil, tegafur / uracil combination drugs, tegafur / gimeracil / oteracium potassium combination drugs, capecitabine, irinotecan, oxaliplatin, trifluridine / tipiracil hydrochloride, etc. However, anticancer drugs are not limited to these examples. Anticancer drugs that are not commercially available as of the filing date of this application but may be commercially available in the future may also be used in the method for treating colon cancer of the present invention. Examples of molecular targeted therapeutic agents include cetuximab, panitumumab, bevacizumab, ramucirumab, aflibercept, regorafenib, etc. However, molecular targeted therapeutic agents are not limited to these examples. Even molecular targeted therapeutic agents that are not commercially available as of the filing date of this application but may be commercially available in the future may be used in the method for treating colorectal cancer of the present invention. When the subject is a non-human organism, the colorectal cancer therapeutic agent may be a pharmaceutical substance in the research stage, a pharmaceutical substance in the development stage, or a pharmaceutical substance in clinical trials.
[0080] The method of administering the drug is not particularly limited. Usually, oral administration, infusion, etc. are selected. However, the method of administering the drug is not limited to these examples. The type of surgery performed on the subject is not particularly limited. Usually, endoscopic surgery, surgical resection, radiation therapy, etc. are selected. However, the type of surgery performed on the subject is not limited to these examples. Even surgery or treatment methods that are not common as of the filing date of this application but may become common in the future may be used in the method for treating colon cancer of the present invention.
[0081] The colon cancer treatment method of the present invention uses at least one selected from the group consisting of the above-mentioned method of the present invention for assisting in the diagnosis of colon cancer, the method of evaluating the possibility of having colon cancer, the method for diagnosing colon cancer, the method of testing for colon cancer, the method of testing the possibility of having colon cancer, the method of collecting data for diagnosing colon cancer, the in vitro method for assisting in the diagnosis of colon cancer, the diagnostic kit for colon cancer, the method of diagnosing colon cancer, the method of determining colon cancer, and the method of testing for colon cancer. Therefore, according to the colon cancer treatment method of the present invention, it is possible to treat a subject based on a highly accurate diagnosis result, thereby preventing the implementation of unnecessary treatment, reducing the burden on the patient, and reducing medical costs.
[0082] <Colon cancer treatment drug> The colon cancer therapeutic agent of the present invention comprises an inhibitor of at least one microRNA selected from the group consisting of hsa-miR-129-1-3p, hsa-miR-566, and hsa-miR-598-5p.
[0083] Examples of inhibitors of hsa-miR-129-1-3p, hsa-miR-566, and hsa-miR-598-5p include miRNA inhibitors. miRNA inhibitors are antisense nucleotides of microRNAs. miRNA inhibitors bind to the sense strand of microRNA and inhibit the function of the microRNA. As the miRNA inhibitor, a commercially available kit can be used. Such a commercially available kit can be, for example, mirVana miRNA inhibitor (Thermo Fisher Scientific, USA). For example, the catalog number of the mirVana miRNA inhibitor containing the miRNA inhibitor of hsa-miR-129-1-3p is 4464084, and its Assay ID is MH12962. In addition, the catalog number of the mirVana miRNA inhibitor containing the miRNA inhibitor of hsa-miR-566 is 4464084, and its Assay ID is MH11490.
[0084] Other examples of inhibitors of hsa-miR-129-1-3p, hsa-miR-566, and hsa-miR-598-5p include RNAi reagents. However, inhibitors are not limited to these examples. Even if an inhibitor is not common at the filing date of this application, it may be used in the colon cancer therapeutic agent of the present invention as long as it is a molecule that can inhibit the expression of hsa-miR-129-1-3p, hsa-miR-566, and hsa-miR-598-5p.
[0085] (Mechanism of action) The colon cancer therapeutic agent of the present invention described above includes an inhibitor of at least one microRNA selected from the group consisting of hsa-miR-129-1-3p, hsa-miR-566, and hsa-miR-598-5p. As shown in the examples described below, when the expression level of at least one microRNA selected from the group consisting of hsa-miR-129-1-3p, hsa-miR-566, and hsa-miR-598-5p is inhibited, the cell motility of colon cancer cells is reduced. Therefore, it has been suggested that inhibitors of each microRNA of hsa-miR-129-1-3p, hsa-miR-566, and hsa-miR-598-5p may be useful as candidates for therapeutic agents for colon cancer. From the above, the colon cancer therapeutic agent of the present invention may have a curative effect on colon cancer. In addition, the colon cancer therapeutic agent of the present invention, which includes an inhibitor of at least one microRNA selected from the group consisting of hsa-miR-129-1-3p, hsa-miR-566, and hsa-miR-598-5p, can also be said to be an inhibitor of the motility of colon cancer cells. Similarly, the colon cancer treatment method of inhibiting at least one microRNA selected from the group consisting of hsa-miR-129-1-3p, hsa-miR-566, and hsa-miR-598-5p in a subject can also be said to be a method of suppressing the motility of colon cancer cells. EXAMPLES
[0086] The present invention will be described in more detail below with reference to examples, but the present invention is not limited to the following description.
[0087] <Explanation of Abbreviations> qRT-PCR: Quantitative RT-PCR median: median IQR: Interquartile range Healthy: Healthy CRC: colorectal cancer patients stage 0 / I CRC: Stage 0 or stage I early colorectal cancer patients n: Number of specimens P value: p-value AUC: Area Under the ROC Curve 95%CI: 95% Confidence Interval In the table, "E" means the power of 10. For example, "1.90E-04" means 1.90 × 10 -4 .
[0088] <Construction of Cohorts> First, from a total cohort of 522 cases consisting of 299 healthy subjects and 223 colorectal cancer patients, 415 cases with age and gender randomly matched were extracted, and the 415-case cohort was randomly classified into the following three cohorts: Cohort 1, Cohort 2, and Cohort 3. Cohort 1: 9 cases consisting of 6 healthy subjects and 3 colorectal cancer patients. Cohort 2: 280 cases consisting of 140 healthy subjects and 140 colorectal cancer patients. Cohort 3: 126 cases consisting of 63 healthy subjects and 63 colorectal cancer patients.
[0089] Here, the total number of healthy subjects in Cohort 2 and Cohort 3 is 203 cases. Also, among the colorectal cancer patients in Cohort 2 and Cohort 3, the total number of cases with a progression stage of stage 0 or stage I was 64 cases. Therefore, the following Cohort 4 was further constructed, and by analyzing Cohort 4, the detection sensitivity, accuracy, and specificity of early colorectal cancer were confirmed. Cohort 4: 267 cases consisting of 203 healthy subjects and 64 colorectal cancer patients at stage 0 or stage I.
[0090] <RNA Extraction> In each cohort, RNA in the samples collected from urine was extracted. Using 200 μL of urine that had been cryopreserved at -80°C immediately after collection as a sample, miRNA in the sample was extracted using the miRNeasy Serum / Plasma Kit (Qiagen, USA) according to the conditions described in the attached protocol.
[0091] <cDNA Synthesis> cDNA was synthesized using the extracted miRNA as a template using the TaqMan Advanced MicroRNA cDNA Synthesis Kit (ThermoFisher Scientific, USA) according to the conditions described in the attached protocol.
[0092] <qrt-pcr> The synthesized cDNA was used to perform qRT-PCR using TaqMan Advanced MicroRNA Assay and the 7500 Fast real-time PCR system (ThermoFisher Scientific, USA). The thermal cycle and reaction conditions for qRT-PCR are shown in Table 1, and a list of the Assay IDs, target miRNAs, and their respective base sequences are shown in Table 2.
[0093] [Table 1]
[0094] [Table 2]
[0095] FIG. 1 is a flow diagram showing an outline of the verification of this embodiment. In cohort 1, miRNA array analysis was performed to select or identify multiple miRNAs that were abnormally expressed in the urine of colorectal cancer patients (see Figure 2). Cohort 1 is a comprehensive analysis cohort (Discovery cohort in Figure 1). In cohort 2, the expression levels of three miRNAs that serve as colon cancer diagnostic markers of the present invention among the miRNAs identified by the miRNA array analysis in cohort 1 were measured by qRT-PCR. Significant colon cancer diagnostic markers were extracted by multivariate analysis of the measurement results, and a genetic diagnostic panel was constructed. Cohort 2 is a training cohort (Training set in Figure 2). In cohort 3, we verified the accuracy of the genetic diagnostic panel constructed in cohort 2. Cohort 3 is the validation cohort (Validation set in Figure 3). In cohort 4, the detection accuracy of early colorectal cancer was primarily analyzed. The specific details and results of the analyses of Cohort 1, Cohort 2, Cohort 3, and Cohort 4 performed in this Example will be explained below.
[0096] <Analysis of Cohort 1> Analysis was performed using SurePrint miRNA microarray (Agilent, USA) using miRNA extracted from cohort 1. GeneSpringGX (Agilent) was used for data analysis. As a result of miRNA array analysis, 11 miRNAs were identified that were significantly increased or decreased in the urine of colorectal cancer patients.
[0097] <Analysis of cohort 2> The 11 miRNAs selected in Cohort 1 were measured by qRT-PCR. Table 3 shows the expression levels of three of the 11 miRNAs, hsa-miR-129-1-3p, hsa-miR-566, and hsa-miR-598-5p.
[0098] [Table 3]
[0099] As shown in Table 3, hsa-miR-129-1-3p, hsa-miR-566, and hsa-miR-598-5p all showed a 2 -△Ct The values of these genes, that is, the measured expression levels of these genes, were higher in colorectal cancer patients (CRC) than in healthy subjects (Healthy).
[0100] In cohort 2, univariate and multivariate analyses were performed on the expression levels of the three types of microRNAs, hsa-miR-566 and hsa-miR-598-5p, to verify the significant differences between healthy subjects and colorectal cancer patients. The results are shown in Table 4 and Figure 3. Fig. 3 is a diagram showing the ROC curves of each colon cancer diagnostic marker in cohort 2. In Fig. 3, "1-specificity" is plotted on the horizontal axis, and "sensitivity" is plotted on the vertical axis.
[0101] [Table 4]
[0102] As shown in Table 4, the P value was less than 0.001 for the three types of microRNAs, hsa-miR-129-1-3p, hsa-miR-566, and hsa-miR-598-5p. This confirmed that the three types of microRNAs, hsa-miR-566 and hsa-miR-598-5p, were significantly more highly expressed in the urine of colorectal cancer patients than in healthy individuals. In addition, the results of multivariate analysis revealed that miR-129-1-3p and miR-566 were each extracted as independent colorectal cancer markers.
[0103] [Table 5]
[0104] Table 5 shows the AUC and 95% CI for each ROC curve shown in FIG. As shown in Table 5, it was confirmed that a genetic diagnostic panel created using hsa-miR-129-1-3p, hsa-miR-566, and hsa-miR-598-5p as markers for diagnosing colon cancer could effectively distinguish between healthy individuals and colon cancer patients. As shown in Table 5, in a genetic diagnostic panel created using a combination of hsa-miR-129-1-3p and hsa-miR-566 as a marker for diagnosing colorectal cancer, the AUC of the ROC curve (Figure 3) was 0.811, which was a particularly good result.
[0105] <Analysis of Cohort 3> In the analysis of cohort 3, the expression levels of two types of microRNAs, hsa-miR-129-1-3p and hsa-miR-566, were measured. Next, univariate and multivariate analyses were performed on the results of measuring the expression levels of each microRNA to verify the significant difference between healthy subjects and colorectal cancer patients. The results are shown in Table 6. Figure 4 is a diagram showing the ROC curves of each colon cancer diagnostic marker in Cohort 3. Table 7 shows the AUC and 95% CI of each ROC curve shown in Figure 4. In Figure 4, "1-specificity" is plotted on the horizontal axis, and "sensitivity" is plotted on the vertical axis.
[0106] [Table 6]
[0107] As shown in Table 6, in cohort 3, both hsa-miR-129-1-3p and hsa-miR-566 showed a 2 -△Ct The values of these genes, that is, the measured expression levels of these genes, were higher in colon cancer patients than in healthy subjects. Furthermore, as shown in Table 6, the P value of the univariate analysis was less than 0.001. This confirmed that hsa-miR-129-1-3p and hsa-miR-566 were significantly more highly expressed in the urine of colorectal cancer patients compared to healthy individuals.
[0108] [Table 7]
[0109] As shown in Table 7, the AUC of each microRNA in the ROC curve (Figure 4) exceeded 0.80. This indicates that the genetic diagnostic panel created using each microRNA as a colon cancer diagnostic marker can distinguish between healthy subjects and colon cancer patients with high accuracy. In particular, the AUC of the ROC curve (Figure 4) for the genetic diagnostic panel created using a combination of hsa-miR-129-1-3p and hsa-miR-566 as a marker for diagnosing colorectal cancer was 0.868, indicating that healthy subjects and colorectal cancer patients could be separated with particularly high accuracy, and particularly good results were obtained. Cohort 3 is a case group independent of Cohort 1 and Cohort 2. Therefore, the above analysis results of Cohort 3 suggest that hsa-miR-129-1-3p and hsa-miR-566 are useful as independent diagnostic markers for colorectal cancer.
[0110] <Analysis of Cohort 4> In the analysis of cohort 4, the expression levels of each microRNA, hsa-miR-129-1-3p and hsa-miR-566, were measured. The results are shown in Table 8.
[0111] [Table 8]
[0112] As shown in Table 8, in cohort 4, both hsa-miR-129-1-3p and hsa-miR-566 showed a 2 -△Ct The values of these genes, that is, the measured values of the expression levels of these genes, were higher in colon cancer patients than in healthy subjects.
[0113] Next, univariate and multivariate analyses were performed on the results of measuring the expression levels of each microRNA to verify significant differences between healthy subjects and colorectal cancer patients. The results are shown in Figures 5, 6, 7, and Table 9.
[0114] [Table 9]
[0115] As shown in Table 9, the p-values were both less than 0.001 in the univariate and multivariate analyses. This confirmed that hsa-miR-129-1-3p and hsa-miR-566 were significantly more highly expressed in the urine of colorectal cancer patients than in healthy individuals.
[0116] FIG. 5 shows the expression levels of hsa-miR-129-1-3p in Cohort 4, comparing healthy subjects with stage 0 or stage I colon cancer patients. FIG. 6 is a diagram showing the expression level of hsa-miR-566 in cohort 4 compared between healthy subjects and colorectal cancer patients at stage 0 or stage I. As shown in FIGS. 5 and 6, for both hsa-miR-129-1-3p and hsa-miR-566, each colorectal cancer diagnostic marker was significantly highly expressed in colorectal cancer patients at stage 0 or stage I compared to healthy subjects.
[0117] FIG. 7 is a diagram showing the ROC curves of each colorectal cancer diagnostic marker in cohort 4. Table 10 shows the AUC and 95% CI of the ROC curves obtained in cohort 4. In FIG. 7, “1 - specificity” was plotted on the horizontal axis and “sensitivity” was plotted on the vertical axis.
[0118]
Table 10
[0119] As shown in Table 10, in the ROC curve (FIG. 7) with the combination of microRNAs hsa-miR-129-1-3p and hsa-miR-566, the AUC was 0.845. From this, it was found that according to the gene diagnostic panel prepared with the combination of hsa-miR-129-1-3p and hsa-miR-566 as a colorectal cancer diagnostic marker, even in the case of early colorectal cancer patients whose colorectal cancer progression is at stage 0 or stage I, healthy subjects and early colorectal cancer patients can be separated with high precision.
[0120] <An example of the cut-off value, sensitivity, and specificity in the ROC curve> An example of the cut-off value, sensitivity, and specificity in the ROC curve is shown in the following description and Table 11. When hsa-miR-598-5p was used alone as a colorectal cancer diagnostic marker, the cut-off value in the ROC curve was set to 0.177 or more. In this case, the sensitivity was 80.9% and the specificity was 67.9% (Table 11). When hsa-miR-566 was used alone as a diagnostic marker for colorectal cancer, the cutoff value in the ROC curve was set at 0.054, with a sensitivity of 87.5% and a specificity of 53.5% (Table 11). When hsa-miR-129-1-3p was used alone as a diagnostic marker for colorectal cancer, the cutoff value in the ROC curve was set to 0.00499 or more, and the sensitivity was 95.3% and the specificity was 54.2% (Table 11). When the combination of hsa-miR-129-1-3p and hsa-miR-566 was used as a diagnostic marker for colorectal cancer, the cutoff value in the ROC curve was set to 0.152 or more, and the sensitivity was 90.6% and the specificity was 65.5% (Table 11).
[0121] [Table 11]
[0122] A genetic diagnostic panel created using a combination of hsa-miR-129-1-3p and hsa-miR-566 as a colon cancer diagnostic marker showed a particularly good AUC of 0.845 in distinguishing between healthy subjects and stage 0 or stage I colon cancer patients (Table 10). Based on multivariate analysis, a model formula using hsa-miR-129-1-3p and hsa-miR-566 expression was found to be able to distinguish stage 0 or stage I colon cancer with a sensitivity of 90.6% and a specificity of 65.5% (Table 11).
[0123] <Analysis using formalin-fixed paraffin-embedded tissue> We compared the expression levels of hsa-miR-129-1-3p and hsa-miR-566 in formalin-fixed, paraffin-embedded (FFPE) sections from 20 cases of colorectal cancer, obtained by endoscopic or surgical resection. miRNA was extracted from colon cancer tissues and the surrounding normal tissues, and the expression levels of hsa-miR-129-1-3p and hsa-miR-566 were measured. In addition, univariate analysis was performed based on the measurement results, and p values were calculated. The analysis results are shown in Table 12, Figures 8 and 9.
[0124] [Table 12]
[0125] As shown in Table 12 and FIG. 8, hsa-miR-129-1-3p was significantly more highly expressed in colon cancer tissues compared to adjacent normal tissues. On the other hand, as shown in Table 12 and Figure 9, hsa-miR-566 showed a similar tendency to hsa-miR-129-1-3p, although there was no significant difference. The fact that no significant difference in the expression level of hsa-miR-566 was observed is thought to be due to the small number of samples (20).
[0126] <Analysis using colon cancer cell lines> The expression levels of hsa-miR-129-1-3p and hsa-miR-566 were analyzed using colon cancer cell lines. Two colon cancer cell lines, namely SW480 and HCT116, were used. Specifically, SW480 and HCT116 were cultured, and samples were taken from each of the following three sources: (i) exosomes in the culture medium, (ii) culture medium, and (iii) cell bodies. The expression levels of hsa-miR-129-1-3p and hsa-miR-566 (2 -△Ct ) was measured. The expression level of hsa-miR-129-1-3p (2 -△Ct ) on the vertical axis, and the expression level of hsa-miR-566 (2 -△Ct ) is plotted on the horizontal axis in Figure 10. In FIG. 10, (i) shows the expression level in exosomes, (ii) shows the expression level in the culture medium, and (iii) shows the expression level in cells. As shown in Figure 10, hsa-miR-129-1-3p and hsa-miR-566 were detectable in all of the samples (i) to (iii). In addition, hsa-miR-129-1-3p and hsa-miR-566 showed similar expression trends in all of the samples (i) to (iii).
[0127] These results suggest that hsa-miR-129-1-3p, hsa-miR-566, and hsa-miR-598-5p are useful as diagnostic markers for colorectal cancer. In addition, it was suggested that if a combination of hsa-miR-129-1-3p and hsa-miR-566 is used as a diagnostic marker for colorectal cancer, it may be possible to detect early stage colorectal cancer with high sensitivity and separate it from healthy subjects.
[0128] <Inhibition of colon cancer diagnostic markers> SW480 and HCT116 were administered with hsa-miR-566 inhibitors. Here, mirVana miRNA inhibitor (catalog number: 4464084, Assay ID: MH11490, Thermo Fisher Scientific, USA) was used as the hsa-miR-566 inhibitor. Anti-miR miRNA Inhibitor Negative Control#1 (catalog number: AM17010, Thermo Fisher Scientific, USA) was used as a negative control. Then, migration assays were performed to evaluate the cell migration ability of SW480 and HCT116. The results are shown in Figures 11 and 12. As shown in Figures 11 and 12, administration of an hsa-miR-566 inhibitor significantly reduced cell motility in both SW480 and HCT116. Here, we performed gene ontology analysis using the miRTarBase (http: / / mirtarbase.mbc.nctu.edu.tw / ) data on miRNA targets. The results are shown in Figures 13 and 14. The top 10 are listed in Figures 13 and 14. Gene ontology terms common to both miRNAs are underlined. As shown in Figures 13 and 14, hsa-miR-129-1-3p and hsa-miR-566 have many common target gene functions. Thus, it was suggested that hsa-miR-129-1-3p and hsa-miR-566 may have similar molecular biological functions (Figures 13 and 14). Therefore, since inhibition of hsa-miR-129-1-3p may also significantly reduce cell motility, hsa-miR-129-1-3p inhibitors may also be useful as therapeutic agents for colorectal cancer. [Industrial Applicability]
[0129] According to the present invention, the presence or absence of colon cancer can be determined with high accuracy, and early stage colon cancer can be detected with high sensitivity.
Claims
1. A method for assessing the possibility of colon cancer, comprising: The expression level of a diagnostic marker for colorectal cancer including at least a combination of hsa-miR-129-1-3p and hsa-miR-566 in a sample collected from a subject is measured; The method comprises assessing that the subject is likely to be affected by colon cancer when the expression level of the colon cancer diagnostic marker is relatively high compared to the expression level of the colon cancer diagnostic marker in a healthy subject.
2. The method according to claim 1, wherein the colon cancer diagnostic marker further comprises hsa-miR-598-5p.
3. The method according to claim 1 or 2, wherein the colon cancer diagnostic marker is contained in a human body fluid.
4. The method according to any one of claims 1 to 3, wherein the expression level is standardized using the following miRNA in the sample as a standardization factor to compare the expression level with a reference value: miRNA: either or both of hsa-miR-4669 and hsa-miR-6756-5p.
5. The method according to any one of claims 1 to 4, wherein the stage of colon cancer is stage 0 or stage I.
6. 1. A method for collecting data for assessing the likelihood of colon cancer, comprising: The expression level of a diagnostic marker for colorectal cancer including at least a combination of hsa-miR-129-1-3p and hsa-miR-566 in a sample collected from a subject is measured; The method comprises assessing that the subject is likely to be affected by colon cancer when the expression level of the colon cancer diagnostic marker is relatively high compared to the expression level of the colon cancer diagnostic marker in a healthy subject.
7. The method according to claim 6, wherein the colon cancer diagnostic marker further comprises hsa-miR-598-5p.
8. The method according to claim 6 or 7, wherein the colon cancer diagnostic marker is contained in a human body fluid.
9. The method according to any one of claims 6 to 8, wherein after the expression level is measured, the expression level is normalized using the following miRNAs in the sample as normalization factors: miRNA: either or both of hsa-miR-4669 and hsa-miR-6756-5p.
10. The method according to any one of claims 6 to 9, wherein the stage of colon cancer is stage 0 or stage I.
11. A method for assessing the possibility of colon cancer, comprising: The expression level of a colon cancer diagnostic marker including hsa-miR-598-5p in human body fluids is measured, The method comprises assessing that the subject is likely to be affected by colon cancer when the expression level of the colon cancer diagnostic marker is relatively high compared to the expression level of the colon cancer diagnostic marker in a healthy subject.
12. The method according to claim 11, wherein the colon cancer diagnostic marker further comprises at least one selected from the group consisting of hsa-miR-129-1-3p in the body fluid and hsa-miR-566 in the body fluid.
13. The method according to claim 11 or 12, wherein the expression level is standardized using the following miRNA in the body fluid as a standardization factor to compare the expression level with a reference value: miRNA: either or both of hsa-miR-4669 and hsa-miR-6756-5p.
14. The method according to any one of claims 11 to 13, wherein the stage of colon cancer is stage 0 or stage I.
15. The method according to any one of claims 11 to 14, wherein the body fluid is urine.
16. 1. A method for collecting data for assessing the likelihood of colon cancer, comprising: The expression level of a colon cancer diagnostic marker including hsa-miR-598-5p in human body fluids is measured, The expression level is compared with a reference value.
17. The method according to claim 16, wherein the colon cancer diagnostic marker further comprises at least one selected from the group consisting of hsa-miR-129-1-3p in the body fluid and hsa-miR-566 in the body fluid.
18. The method according to claim 16 or 17, wherein after the expression level is measured, the expression level is normalized using the following miRNAs in the body fluid as normalization factors: miRNA: either or both of hsa-miR-4669 and hsa-miR-6756-5p.
19. The method according to any one of claims 16 to 18, wherein the stage of colon cancer is stage 0 or stage I.
20. The method according to any one of claims 16 to 19, wherein the body fluid is urine.
21. A kit for use in the method according to any one of claims 1 to 20, comprising: A kit for diagnosing colon cancer comprising the colon cancer diagnostic marker and a specific primer.
22. A kit for use in diagnosing colorectal cancer, comprising: A diagnostic kit for colon cancer comprising a colon cancer diagnostic marker containing hsa-miR-598-5p in human body fluids and specific primers.
23. The colon cancer diagnostic kit according to claim 22, wherein the colon cancer diagnostic marker further comprises at least one selected from the group consisting of hsa-miR-129-1-3p in the body fluid and hsa-miR-566 in the body fluid.
24. The kit for diagnosing colon cancer according to claim 22 or 23, wherein the body fluid is urine.
25. The colon cancer diagnostic kit according to any one of claims 21 to 24, further comprising at least one selected from the group consisting of an extraction reagent for extracting the colon cancer diagnostic marker from a sample, a cDNA synthesis reagent for synthesizing a cDNA of the colon cancer diagnostic marker, a sample collection container, a standardization primer specific to a miRNA serving as a standardization factor, a reverse transcriptase, a DNA polymerase, and an instruction manual.
26. The colon cancer diagnostic kit according to any one of claims 21 to 25, wherein the stage of colon cancer is stage 0 or stage I.
Citation Information
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