56564results about "Microbiological testing/measurement" patented technology

A method for aligning a sample to an array is provided. An image of sample image of a sample can be received by a data processor. The sample image having a first resolution. An array image including an overlay of an array with the sample and an array fiducial can be received by the data processor. The array image having a second resolution lower than the first resolution of the sample image. The sample image can be regisered to the array image by aligning the sample image and the array image. An aligned image can be generated based on the registering. The aligned image can can include an overlay of the sample image with the array. The aligned image can be provided by the data processor. A method for detecing fiducials associated with an array is provided. Systems and non-transitory computer readable mediums performing the method are also provided.

The invention relates to a fermentation process abnormal state early warning method, system and device and a medium, and the early warning method comprises the steps: collecting fermentation process parameters in a fermentation tank in real time, and generating a physical parameter matrix; obtaining Raman spectrum data of the fermentation liquor and extracting metabolic feature vectors; fusing the physical parameter matrix with the metabolic feature vector to obtain a multi-modal data cube; constructing a metabolic network model, inputting the physical parameter matrix as a boundary condition, and generating calibrated metabolic flux distribution data; dynamically adjusting the monitoring weight coefficient of the fermentation process parameter, and generating a parameter sensitivity weight vector; inputting the multi-modal data cube and the parameter sensitivity weight vector into a space-time convolutional network, extracting time sequence features and spatial distribution features, and performing similarity matching with a preset abnormal mode library to obtain a matching result; and determining an abnormity early warning type according to a matching result with abnormity, and generating a corresponding compensation control instruction. The stability of the fermentation process is improved.

Provided herein are methods of identifying genetic variants in biological samples. In particular, the present disclosure uses spatial transcriptomic templated ligation methods and compositions to identify the presence or absence, and the location of genetic variants in the transcriptome or genome of a biological sample.

Provided herein are methods, compositions, and systems for improved in situ detection of analytes and spatial analysis using, e.g., a sequencing readout.

Provided herein are methods for capturing a connected probe and / or a capture handle sequence to a capture domain of a capture probe.

Provided herein are methods, compositions, and kits for in vitro transcription of spatially captured target nucleic acids on an array.

Provided herein are methods of detecting an analyte of interest to interrogate spatial gene expression in a sample using RNA-templated ligation.

The present disclosure relates to materials and methods for spatially analyzing nucleic acids that have been fragmented with a transposase enzyme, alone or in combination with other types of analytes.

Provided herein are methods, compositions, and kits to spatially detect genetic variants in a target nucleic acid via templated-ligation and reversible terminator nucleotides.

The present invention provides assays and assay systems for use in spatially encoded biological assays. The invention provides an assay system comprising an assay capable of high levels of multiplexing where reagents are provided to a biological sample in defined spatial patterns; instrumentation capable of controlled delivery of reagents according to the spatial patterns; and a decoding scheme providing a readout that is digital in nature.

Provided herein are methods of determining a location of a biological analyte in a biological sample.

Provided herein are methods for capturing a connected probe and / or a capture handle sequence to a capture domain of a capture probe.

The present invention provides assays and assay systems for use in spatially encoded biological assays. The invention provides an assay system comprising an assay capable of high levels of multiplexing where reagents are provided to a biological sample in defined spatial patterns; instrumentation capable of controlled delivery of reagents according to the spatial patterns; and a decoding scheme providing a readout that is digital in nature.

Methods and analyte sensors including at least a first working electrode having a first active area thereon, and performing a dip coating operation to deposit a bilayer membrane upon the first working electrode and the first active area. The bilayer may include an inner layer having a first membrane polymer and an outer layer having a second membrane polymer, the first membrane polymer and the second membrane polymer differing from one another. The dip coating operation may comprise one or more first dips in a first membrane formulation to form the inner layer of the bilayer membrane and one or more second dips in a second membrane formulation to form the outer layer of the bilayer membrane upon the inner layer.

Multiple enzymes may be present in one or more active areas of an electrochemical analyte sensor for detecting one or more different analytes. In particular, an analyte sensor may comprise a sensor tail configured for insertion into a tissue and one or more working electrodes having a glucose-responsive active area and an ethanol-responsive active area to detect glucose and ethanol in vivo.

A sample holder includes a first member featuring a first retaining mechanism configured to retain a first substrate that includes a sample, a second member featuring a second retaining mechanism configured to retain a second substrate that includes a reagent medium, and an alignment mechanism connected to at least one of the first and second members, and configured to align the first and second members such that the sample contacts at least a portion of the reagent medium when the first and second members are aligned.

Provided herein are methods of determining a location of a target analyte in a non-permeabilized biological sample and methods of reducing background binding of an analyte on an array.

The present disclosure provides methods and assay systems for use in spatially encoded biological assays, including assays to determine a spatial pattern of abundance, expression, and / or activity of one or more biological targets across multiple sites in a sample. In particular, the biological targets comprise proteins, and the methods and assay systems do not depend on imaging techniques for the spatial information of the targets. The present disclosure provides methods and assay systems capable of high levels of multiplexing where reagents are provided to a biological sample in order to address tag the sites to which reagents are delivered; instrumentation capable of controlled delivery of reagents; and a decoding scheme providing a readout that is digital in nature.

The invention provides an agricultural source solid waste pollution reduction and carbon reduction synergistic effect calculation method and system. According to the agricultural solid waste pollution reduction and carbon reduction synergistic effect calculation method, a livestock and poultry manure and straw mixture serves as a treatment object, an environmental parameter set of microbial metabolism intensity is obtained, and then a microbial agent feeding acceleration rate and a flora activity attenuation curve are dynamically matched. In the aerobic fermentation stage, through linkage of pile turning operation and a microbial inoculum adding strategy, activity balance of surface and deep flora is maintained, and a microbial inoculum adding time window is corrected in combination with historical data. And establishing a quantitative model with a carbon-nitrogen ratio imbalance threshold value as a constraint, iteratively optimizing a nonlinear association relationship between the inoculant feeding acceleration rate and the pile turning operation frequency, and outputting a full-period synergistic effect evaluation result. According to the technical scheme, the pollution reduction and carbon reduction synergistic effect of agricultural source solid waste treatment is improved, and the dual purposes of resource utilization and environmental protection are achieved.

Provided herein are methods for capturing an analyte from a first region of interest of a biological sample on a substrate, where the biological sample comprises the first region of interest and a second region, and where the method includes contacting the second region with a sealant in order to create a hydrophobic seal thereby preventing an interaction between an analyte from the second region with a capture domain of a capture probe.

The present invention provides assays and assay systems for use in spatially encoded biological assays. The invention provides an assay system comprising an assay capable of high levels of multiplexing where reagents are provided to a biological sample in defined spatial patterns; instrumentation capable of controlled delivery of reagents according to the spatial patterns; and a decoding scheme providing a readout that is digital in nature.

This disclosure provides methods for spatial profiling of biological analytes present in a biological sample. Methods include generating feature arrays using a master / copy format using recessed arrays, and methods for using such arrays. For example spatially-tagged analyte capture analytes can be used in spatial detection in methods to determine the location of analytes (e.g., proteins) in biological samples.

Provided herein are methods, compositions, and kits for the spatial analysis of target nucleic acids, or complements thereof, by their 5′ end.

The present disclosure relates to materials and methods for spatially analyzing nucleic acids that have been fragmented with a transposase enzyme, alone or in combination with other types of analytes.

Provided herein are methods of detecting a target nucleic acid of interest for spatial gene expression analysis in a sample using barcoded templated ligation probes.

This disclosure relates to compositions and methods for analyzing a tissue section from a biological sample.

Provided herein are method for determining a location of nucleic acids in fixed biological samples, in which the method includes use of a template switching oligonucleotide (TSO) and a randomer during second strand synthesis.

This disclosure relates to methods for spatial profiling of analytes present in a biological sample. Also provided are methods for using spatially barcoded substrates to detect a biological analyte in a cell culture, an organism, and organoid. Also provided are methods for using spatially barcoded substrates to detect the temporal profile of a biological analyte.