3366 results about "Genetics" patented technology

The invention discloses a cowpea 5K SNP (Single Nucleotide Polymorphism) liquid chip and application thereof in variety identification, and belongs to the technical field of biology. The liquid chip provided by the invention comprises a set of nucleotide probes for detecting 5847 SNP sites of cowpea, and can be widely applied to different scenes of germplasm resource identification, genetic diversity evaluation, variety identification, genetic relationship identification, purification and rejuvenation of local varieties and the like of different cowpea varieties; an effective scientific basis is provided for cowpea variety identification, the variety identification and evaluation efficiency is improved, and the method has a remarkable application value.

The invention relates to a composition for identifying epinephelus fuscoguttatus, epinephelus coioides and hybrid offspring and application, and belongs to the field of molecular biology, the composition comprises a pair of primers and a group of probes, and the sequences are shown as SEQ ID NO.1-4. The invention further provides a kit for identifying the epinephelus fuscoguttatus, the epinephelus coioides and the hybrid offspring thereof, and the kit is used for identifying the epinephelus fuscoguttatus and the hybrid offspring of the epinephelus coioides and the hybrid offspring of the epinephelus coioides and the hybrid offspring of the epinephelus coioides. The kit comprises the composition disclosed by the invention. The composition can be used for rapidly identifying epinephelus fuscoguttatus, epinephelus coioides and hybrid filial generation gold and tiger hybrid spots of the epinephelus coioides, the epinephelus coioides and the hybrid filial generation gold and tiger hybrid spots of the epinephelus coioides and the epinephelus coioides and the hybrid filial generation gold and tiger hybrid spots of the epinephelus

The invention discloses a hemoglobin-resistant Taq DNA polymerase mutant and a construction method thereof, and relates to the field of biology, and the hemoglobin-resistant Taq DNA polymerase mutant is characterized in that a nucleotide sequence for coding the Taq DNA polymerase is shown as SEQ ID NO.1, and the mutant comprises at least one mutation or all mutations selected from S623D and E721A sites. On the basis of natural Taq DNA polymerase, the molecular structure of the Taq DNA polymerase is modified through rational design and combination with a site-specific mutagenesis biotechnology, so that the Taq DNA polymerase mutant is more suitable for PCR amplification of samples containing hemoglobin and the like than a wild type, and the result judgment accuracy of a sample containing a hemoglobin inhibitor is more facilitated.

The invention provides an expansible ring enzyme mutant and an application of the expansible ring enzyme mutant in synthesis of G-7-ADCA. A series of mutants with penicillin G ring expansion activity are obtained through ancestor enzyme sequence reconstruction, directed evolution and the like, and the mutants can directly expand the ring of the substrate penicillin G to generate G-7-ADCA. Therefore, the expansive ring enzyme mutants have important application value in industry.

The invention discloses a gene and a protein for adjusting tobacco polyphenol aroma substances and application of the gene and the protein. The gene is a tobacco NtMYB28 gene, and the CDS sequence of the tobacco NtMYB28 gene is as shown in SEQ ID No. 1. The invention further discloses application of the tobacco NtMYB28 gene in regulating the content of endogenous polyphenol substances in tobacco and regulating and controlling the metabolic pathway of phenylpropane in tobacco. The key gene NtMYB28 capable of simply and effectively adjusting the content of polyphenol substances in tobacco and the metabolic pathway of phenylpropane is found, and the gene can be applied to efficient cultivation of new high-aroma tobacco materials and development and utilization of new high-value functional tobacco germplasm.

The invention relates to a variation identification method of a nanopore single molecule sequencing current signal, which comprises the following steps of: dividing an original current signal generated by nanopore single molecule sequencing into continuous time periods according to a sequence that a basic group passes through a nanopore, calculating an average signal rhythm, constructing a standard time rhythm when a standard basic group sequence passes through the nanopore, and identifying the variation of the nanopore single molecule sequencing current signal. Comparing the offset difference between the actually measured average signal rhythm and the standard time rhythm, wherein a difference salient region is a potential variation region; current signals of front and back neighborhoods are extracted, a current signal disturbance difference value is quantized, and a region with the disturbance difference value having obvious direction asymmetry characteristics is a variation region to be confirmed; the range is expanded, current signals are extracted, disturbance intensity is calculated, and when the disturbance intensity presents a gradually-enhanced or gradually-weakened continuous change trend, it is judged that the variation area to be confirmed has physical rationality; and determining a theoretical current signal by using the corresponding non-variation sequence, comparing the theoretical current signal with an actually measured current signal, calculating a current difference, and determining that the current difference exceeds a normal difference range as a real variation region.

The invention provides an RNA polymerase variant and application thereof, and relates to the technical field of biology, the enzyme specific activity of the variant is obviously improved compared with that of a wild type, and the addition amount of polymerase is reduced, so that the cost is saved. Meanwhile, the mutant also effectively reduces the generation of incomplete fragment impurities and improves the integrity. In addition, the invention further provides a method for generating RNA through in-vitro transcription.

The invention belongs to the technical field of genetic breeding, and particularly relates to application of a molecular marker for breast circumference character breeding of grassland short-tailed sheep, the molecular marker is at least one of the following (1)-(3): (1) a nucleotide sequence as shown in SEQ ID NO.1, nucleotide at the 101bp site is A or G; (2) a nucleotide sequence as shown in SEQ ID NO.3, wherein the nucleotide at the 101bp site is C or A; (3) a nucleotide sequence as shown in SEQ ID NO.5, wherein the nucleotide at the 101bp site is T or C; the application refers to any one of the following steps: identifying the chest circumference of the grassland short-tailed sheep; the chest circumference of the offspring of the grassland short-tailed sheep is improved. By detecting the genotype of the molecular marker and selecting a dominant genotype individual as a parent, the average chest circumference of offspring can be effectively improved, and a reliable tool is provided for realizing molecular assisted breeding and precise genetic improvement of the chest circumference character of the grassland short-tailed sheep.

The invention provides a stacked cell hierarchy judgment method based on contour concavity and convexity. The method comprises the following steps: performing contour extraction on a cell binary image; calculating a convex hull for the contour point set of each cell, and taking the convex hull as an ideal form reference of the cell in an unshielded state; detecting the convexity defect between the contour point set of each cell and the corresponding convex hull, and quantifying the characteristic parameter of each convexity defect; screening the convexity defects according to the characteristic parameters to determine significant recesses, marking cells with at least one significant recess as concave cells, and marking cells without significant recesses as convex cells; screening candidate cell pairs according to the spatial position relationship between the cells; according to the convex-concave attributes of the two cells in the candidate cell pair and the position relation between the coordinates of the center of mass and the remarkable concave area, the shielding relation between the two cells is judged; and constructing an attribute graph by taking each cell as a node and taking the occlusion relationship as an edge, and generating a cell stacking hierarchy sequence through topological sorting.

The invention discloses a positioning method of trachinotus ovatus growth trait related QTL (quantitative trait loci) based on 2b-RAD technology and application, the method uses 2b-RAD technology to perform sequencing on 300 trachinotus ovatus full-sib F1 generation and male and female parent individuals and develop SNP (single nucleotide polymorphism) markers, constructs a trachinotus ovatus high-density genetic linkage map, performs linkage positioning analysis in combination with 8 growth phenotype data, and finds that the trachinotus ovatus growth trait related QTL is found. 85 stable QTLs associated with the growth traits are screened out, and the stable QTLs contain 763 SNP sites. The invention also discloses an application of the method in a genetic map of trachinotus ovatus growth character positioning or molecular marker-assisted breeding of trachinotus ovatus, and the SNP molecular markers of trachinotus ovatus can be applied in genetic map construction and growth character positioning. Particularly, the method has a good application prospect in trachinotus ovatus growth trait molecular marker assisted breeding.

The invention discloses a macrobrachium rosenbergii cherax ratio prediction and breeding method based on phenotypic omics analysis, which comprises the following steps: selecting a plurality of macrobrachium rosenbergii for multi-generation breeding, recording pedigree data of each individual, and constructing a macrobrachium rosenbergii breeding database; the method comprises the following steps: extracting phenotypic characteristics of macrobrachium at different culture stages, analyzing a rule between a growth index and a chelate ratio, carrying out heritability evaluation, and constructing a macrobrachium phenotypic omics network; the growth path of macrobrachium rosenbergii is analyzed, abnormal events in the breeding period are recognized, and a macrobrachium rosenbergii growth situation network is generated; constructing a macrobrachium phenotype knowledge map, and constructing a macrobrachium cherax ratio prediction model; and performing data acquisition on a macrobrachium rosenbergii population to be bred to obtain early phenotypic data, performing breeding decision, and performing breeding path recommendation on bred individuals by using the macrobrachium rosenbergii phenotypic knowledge graph. Meanwhile, whether the breeding path is deviated or not in the breeding process is analyzed, and a correction scheme is formulated for pushing, so that the breeding period of the macrobrachium is shortened, and the breeding accuracy and efficiency are improved.

The invention discloses an SNP (Single Nucleotide Polymorphism) molecular marker related to a single wheat spike number character and application of the SNP molecular marker, and belongs to the technical field of molecular marker breeding. The invention discloses a single wheat spike number related SNP-783 site and application thereof, the SNP site corresponds to the 783rd basic group from the 5'tail end of a sequence as shown in SEQ ID NO.1, and when the site is C / C homozygous, the corresponding genotype is A, and when the site is C / C homozygous, the corresponding genotype is B, and when the site is C / C homozygous, the corresponding genotype is C / C homozygous; when the locus is T / T homozygous, the corresponding genotype is B, and the ear number of a single plant is as follows: the wheat with the homozygous genotype A is greater than or candidate to be greater than the wheat with the homozygous genotype B. The SNP has high effectiveness and potential application value, the wheat with the high spike number per plant can be found by detecting the SNP, and the SNP has important value in research or application of cultivation of high-yield wheat varieties.

The invention belongs to the technical field of pig molecular marker-assisted selection, and particularly relates to application of an SNP molecular marker related to the character of the number of live piglets born by pigs. The SNP molecular marker is a basic group of a 32663785th site of a ninth chromosome in a pig genome Sscrofa11.1. 109, the SNP site of the molecular marker has C / T polymorphism, and T is a favorable allelic variation of the character of the number of live piglets born by a pig. The dominant alleles of the SNP are preferably selected, the frequency of the dominant alleles can be increased generation by generation, the number of live piglets of pigs is increased, and the genetic improvement progress of the pigs is accelerated, so that the breeding and production benefits of the pigs are effectively improved.

The invention discloses a molecular marker primer group for identifying a macadamia nut variety Yunnan No.4, a kit and application. The molecular marker primer group is composed of three pairs of primers, and each pair of primers is composed of an upstream primer and a downstream primer. An upstream primer of the first pair of primers is as shown in SEQ ID NO: 1 in a sequence table, a downstream primer of the first pair of primers is as shown in SEQ ID NO: 2 in the sequence table, an upstream primer of the second pair of primers is as shown in SEQ ID NO: 3 in the sequence table, a downstream primer of the second pair of primers is as shown in SEQ ID NO: 4 in the sequence table, an upstream primer of the third pair of primers is as shown in SEQ ID NO: 5 in the sequence table, and a downstream primer of the fourth pair of primers is as shown in SEQ ID NO: 6 in the sequence table. The downstream primer of the third pair of primers is shown as SEQ ID NO: 6 in the sequence table. The molecular marker primer group can accurately identify the macadimia nut variety Yunnan No.4.

Aiming at the problems of low efficiency, strong subjectivity, insufficient modeling ability, complex hyperspectral data noise, weak waxiness spectrum difference and the like of a traditional rice grain waxiness discrimination method, the invention provides a hyperspectral rice grain waxiness discrimination method based on multi-branch collaborative modeling. The method comprises the following steps: S1, acquiring glutinous and non-glutinous rice grain images by using a hyperspectral imaging system to obtain spectral data; s2, preprocessing spectral data through a combined method of SG smoothing, an asymmetric weighted penalty least square method and multivariate scatter correction to reduce noise and interference; s3, constructing a multi-branch modeling architecture which comprises a CNN local feature extraction module, an SRU spectrum sequence modeling module and a HorNet global high-order modeling module, and outputting a discrimination result through a classifier after multi-branch features are subjected to fusion and pooling attention weighting; and S4, evaluating the performance. According to the method, high-precision lossless discrimination of the waxiness is realized, and a technical support is provided for germplasm screening and quality evaluation in rice breeding.

The invention discloses a KASP marker for auxiliary screening of cold-resistant wheat germplasm and application of the KASP marker, and relates to the technical field of biology, in particular to a method for screening or auxiliary screening of wheat cold-resistant germplasm, which comprises the following steps: detecting whether the genotype of wheat to be detected is genotype qFR-7A. 1a or genotype qFR-7A. 1b; the cold resistance of the wheat with the genotype qFR-7A. 1a is higher than that of the wheat with the genotype qFR-7A. 1b, or the cold resistance of the wheat with the genotype qFR-7A. 1a is higher than that of the wheat with the genotype The wheat of which the genotype is qFR-7A. 1a is wheat of which the genotype is GG homozygous based on a G101A SNP (Single Nucleotide Polymorphism) site; the wheat of which the genotype is qFR-7A. 1b is wheat of which the genotype is AA homozygous based on a G101A SNP (Single Nucleotide Polymorphism) site; the G101A SNP site is the 101 nucleotide from the 5'terminal of SEQ ID NO: 1 in a wheat genome. The molecular marker has important theoretical significance and economic value for molecular marker-assisted selection of wheat germplasm or breeding offspring materials with relatively high cold resistance.

The invention discloses a dihydrodaidzein reductase mutant and application of the dihydrodaidzein reductase mutant in synthesis of (3S, 4R)-tetrahydrodaidzein, and belongs to the technical field of biology. According to the mutant, wild-type dihydrodaidzein reductase DHDR is taken as a parent, single-point mutation or combined mutation is carried out, and a DHDR mutant is obtained; the parent site of the single point mutation is one of the 120th site, the 122nd site, the 170th site, the 178th site, the 214th site, the 219th site, the 220th site or the 220th site; the combined mutation adopts two modes: one mode is that a single-point mutation DHDR mutant is taken as a parent, mutation is carried out, and a combined mutation mutant I is obtained; and 2, taking the DHDR combined mutation mutant I as a parent, and performing mutation to obtain a combined mutation mutant II. The DHDR mutant disclosed by the invention is used for synthesizing (3S, 4R)-tetrahydrodaidzein by reducing dihydrodaidzein, and asymmetric reduction with high activity and high stereoselectivity can be realized.

The invention relates generally to compositions and methods for purifying the desired species from a mixture of desired heterodimer and contaminating homodimer immunoglobulin variants by modifying the isoelectric point(s) of the individual chains.

The invention relates to the technical field of genetic breeding, in particular to application of a molecular marker related to daily gain traits of sheep before weaning. The molecular marker is at least one of the following (1)-(2): (1) a nucleotide sequence as shown in SEQ ID NO.1, wherein the nucleotide sequence at the 101bp site is T or C; (2) a nucleotide sequence as shown in SEQ ID NO.3, wherein the nucleotide sequence at the 101bp site is T or C. The application refers to any one of the following (1) and (2): (1) identifying the daily gain of the sheep before weaning; and (2) the daily gain of the offspring of the sheep before weaning is improved. The screened molecular marker influencing the daily gain character of the sheep before weaning can be used for identifying the daily gain character of the sheep before weaning, and the daily gain of offspring before weaning can be improved by selecting a CC genotype individual as a male parent or a female parent.

The invention relates to the technical field of crop genetic breeding, in particular to a plateau rape adaptive germplasm breeding method based on multi-character collaborative screening, which comprises the following steps of: constructing a multi-character evaluation system covering more than 20 indexes of four categories of agriculture, physiology, quality and stress resistance, and determining character weights by applying principal component analysis, grey relational analysis and analytic hierarchy process; and acquiring data by combining unmanned aerial vehicle multispectral imaging, a ground phenotype platform and a molecular marker technology, and substituting the data into the comprehensive evaluation model for germplasm screening. According to the method, the limitation of traditional single-character breeding is broken through, multi-dimensional collaborative evaluation is achieved, and the plateau rape germplasm breeding efficiency and accuracy are remarkably improved.

The invention provides a beet genetic diversity analysis method based on whole genome re-sequencing. The method comprises the steps of PacBio HiFi library construction, computer sequencing, data information analysis, assembly quality evaluation and Hi-C auxiliary genome assembly. The invention further provides application, and the high-continuity beet reference genome is used for analyzing beet intraspecific genetic diversity and developing high-density molecular markers. According to the method, the high precision of HiFi, the super-long read length of Nanopore and Hi-C space interaction data are combined for the first time, the problems of repeated sequence and complex SV analysis are solved, and all-round breakthrough of genome continuity, annotation integrity, genetic diversity coverage and epigenetic integration is achieved.

The invention belongs to the technical field of molecular biology and genetic breeding, and discloses a molecular marker of a locus qSGC.A8-3 remarkably associated with glucosinolate in brassica napus seeds and application of the molecular marker. A locus qSGC.A8-3 remarkably related to the glucosinolate content of the rape seeds and a peak SNP marker Bn-A08-p12638473 of the locus qSGC.A8-3 are located at 10th, 557th and 348th basic groups of a reference genome A08 chromosome of the rape DarmorV4.1, the average additive effect is 9.6 mu mol / g, and 7.5% of phenotypic variance can be explained. When the PARMS marker designed by the SNP is used for detecting rape germplasm resources, the PARMS marker is simple and convenient to operate and clear in typing, and the average thioglycoside content of AA genotype material seeds is higher than that of GG genotype material seeds, so that the PARMS marker has a good selection effect on the thioglycoside of the rape seeds.

The invention discloses a molecular marker closely linked with a cowpea salt tolerance major QTL (quantitative trait loci) and a primer sequence of the molecular marker. The name of the cowpea salt tolerance major QTL is SC300126, a KASP type molecular marker 300126 closely linked with the cowpea salt tolerance major QTL is located at the position of 43816166 bp on a chromosome 11, the marker can be used for amplifying a material to be detected, and whether a sample carries key allelic variation for controlling salt tolerance or not is judged according to the genotype of the marker. The molecular marker and the primer provided by the invention can be used for quickly screening the cowpea salt tolerance major QTL, and compared with a traditional phenotype identification method, the molecular marker and the primer have the advantages of high detection flux, accurate and reliable result and the like, and the typing accuracy can reach 99% or above. The technology can significantly improve the breeding efficiency of the salt-tolerant variety of cowpea and shorten the breeding period.

The invention discloses a peanut quality character selective breeding method based on whole genome SNP and application, and relates to the technical field of crop breeding, the method comprises the specific steps of data acquisition, SNP optimization and marker screening, model construction and new strain breeding; by integrating whole genome re-sequencing, SNP optimization marker screening and mixed deep learning model construction, peanut quality character prediction and breeding value evaluation are achieved, through whole genome re-sequencing and quality control processes, an SNP variation map is obtained, ten key quality characters including protein, oil content, oleic acid and the like are covered, and the breeding value of peanuts is evaluated. According to the method, comprehensive genetic information is provided for subsequent analysis, a feature marker set is formed by screening out sites in the SNP optimization and marker screening link, interference of low-quality sites is avoided, a whole genome selection model is obtained by adjusting and training a mixed deep learning model and optimizing hyper-parameters through ten-fold cross validation, the breeding period is shortened, and the breeding efficiency is improved. And the prediction error rate is reduced.

The invention relates generally to compositions and methods for purifying the desired species from a mixture of desired heterodimer and contaminating homodimer immunoglobulin variants by modifying the isoelectric point(s) of the individual chains.

The invention relates to the field of hybrid rice breeding, and discloses a method for directionally breeding mutant hybrid rice parents. According to the method, mutation tillering is accurately positioned in the M1 tillering stage through the KASP technology, and a directional pollination / harvesting strategy is combined, so that the genetic bottleneck caused by chimeras and low fertility (especially sterile lines) is effectively overcome, the mutation transmission efficiency is maximized, and the M1 generation mutation transmission efficiency is remarkably improved. Through early accurate identification and efficient propagation of the M1 generation, homozygotes can be obtained and screened from the M2 generation, and compared with a traditional process, the method has the advantages that the obtaining process of low-cadmium homozygous parents is obviously accelerated, and the breeding period is greatly shortened. Heavy ion mutagenesis, targeted sequencing, high-throughput KASP typing and directional propagation technologies are integrated, and the whole process from mutagenesis to obtaining of the homozygous low-cadmium parent is rapid, accurate and efficient.

The invention discloses a method, a system and equipment for detecting internal tandem repeat and a storage medium, and the key points of the technical scheme are as follows: obtaining a first reference sequence according to at least one target exon sequence corresponding to a protooncogene, and obtaining a second reference sequence according to at least one target intron sequence corresponding to the protooncogene; comparing the sequencing data of the to-be-detected sample to the second reference sequence to obtain a first comparison result, extracting an uncompared sequence from the sequencing data according to the first comparison result, and comparing the uncompared sequence to the first reference sequence to obtain a second comparison result; and determining a first detection result according to the second comparison result and a first reference sequence, and performing false positive filtering on the first detection result to obtain a second detection result. According to the invention, false positive can be reduced so as to ensure the accuracy and reliability of subsequent analysis.

The invention discloses an SNP (Single Nucleotide Polymorphism) molecular marker related to sheep fecundity and application of the SNP molecular marker. The SNP molecular marker comprises an SNP1 (Single Nucleotide Polymorphism) and / or an SNP2; the SNP1 is located at a base at the 115747587 site of a chromosome 6 of a sheep reference genome AR-UIRamV2.0 version, and the polymorphism of the SNP1 is T / G; the SNP2 is located at a basic group at the 41419566th site of a chromosome 22 of a sheep reference genome AR-UIRamV2.0 version, and the polymorphism of the SNP2 is A / G. According to the scheme, the SNP molecular marker related to sheep fecundity is provided, sheep with the high fecundity character can be efficiently and accurately identified and screened out, and the marker is high in typing quality, single in copy and high in polymorphism and can be used for sheep fecundity molecular marker assisted breeding.

The invention relates to the technical field of traditional Chinese medicinal material breeding, in particular to a traditional Chinese medicinal material breeding parameter regulation and control method and system based on characterization characteristics. The method comprises the steps that according to time nodes, a characterization characteristic detection unit is used for detecting traditional Chinese medicinal material plants to obtain multiple characterization characteristic sequences, and a breeding parameter detection unit is used for detecting a breeding environment to obtain multiple characterization characteristic sequences; a representation characteristic value and a breeding parameter value are calculated respectively; a parameter fitting curve is constructed based on the representation characteristic value and the breeding parameter value; a mapping relation table is constructed according to the parameter fitting curve; a target breeding parameter sequence is obtained; the method comprises the following steps: detecting a traditional Chinese medicinal material plant in a target cultivation environment to obtain a target characterization characteristic sequence, and verifying the target characterization characteristic sequence to obtain a detection result. The method can solve the problem of inaccurate parameter regulation and control in the breeding process of traditional Chinese medicinal materials at present.

The invention belongs to the technical field of plant molecular markers, and particularly discloses an Indel molecular marker related to the salt tolerance of brassica napus and application of the Indel molecular marker. The marker is located at the position of an A01 chromosome scafoldA0133077947 of a brassica napus reference genome ZS11.v10, and the genotype of a polymorphic site is CTAA or C. The invention further discloses a method for identifying the marker of the brassica napus. Large-scale group phenotypic association analysis proves that the molecular marker is remarkably associated with the salt tolerance of the brassica napus in the germination period, and when the polymorphic site genotype is CTAA, the salt tolerance in the germination period is high; when the genotype of the polymorphic site is C, low salt tolerance in the germination period is shown. The invention finds that the polymorphic site is obviously associated with the salt tolerance of the brassica napus for the first time, provides a powerful molecular tool for solving the problems of difficulty in phenotype identification, long period and low efficiency in salt tolerance breeding of the brassica napus, can accurately screen salt-tolerant materials in the early stage, and greatly accelerates the breeding process of new varieties of the salt-tolerant brassica napus.