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11019results about "Biostatistics" patented technology

Federated Distributed Computational Graph Platform for Advanced Robotic Integration in Precision Oncological and Gene Therapies

A federated distributed computational system enables secure oncological therapy optimization through robotic integration. The system establishes a distributed graph architecture with secure communication channels connecting computational nodes, implementing encryption protocols for cross-institutional data exchange. Each node contains processing capabilities for fluorescence-guided imaging, uncertainty quantification, and expert knowledge integration while maintaining hierarchical knowledge graphs of oncological biomarkers, interventions, and outcomes. The system coordinates domain-specific knowledge through token-space communication and implements an advanced robotic integration system for surgical interventions using spatiotemporal tumor mapping, multi-modal fluorescence imaging, surgical robot coordination, and space-time stabilized mesh management. Key capabilities include wavelength-specific multi-modal fluorescence detection, combined epistemic and aleatoric uncertainty estimation, tensor-based data integration with adaptive dimensionality control, and light cone search for adaptive treatment optimization—all while maintaining strict privacy controls.
Owner:QOMPLX INC

System and methods for ai-enhanced cellular modeling and simulation

The AI-enhanced cellular modeling and simulation platform is a computational system designed to enhance biomedical research and development and personalized medicine and wellness. This platform integrates simulation modeling, machine learning and artificial intelligence, multi-omics data, and sophisticated data fusion and decision-support techniques to create comprehensive models of cellular systems and processes across multiple scales. It enables researchers and clinicians to simulate complex biological interactions, predict disease progression, and design or optimize treatment strategies or medical devices with improved accuracy and efficacy. The system's architecture allows for integration of various components, including real-time data processing, federated learning, and quantum computing enhancements. From personalized drug discovery and cancer therapies to synthetic biology and epidemiological analysis, this platform offers powerful tools for understanding and manipulating cellular systems and bioengineered systems. By bridging the gap between molecular-level interactions between cells and materials and organism-wide effects, it enables significant advancements in healthcare and biological sciences.
Owner:QOMPLX INC

Physics-enhanced federated distributed computational graph architecture for multi-species biological system engineering and analysis

A federated distributed computational system enables secure collaboration across multiple institutions for multi-species biological data analysis. The system consists of interconnected computational nodes managed by a central federation manager. Each node contains specialized components that work together to process multi-species biological data while preserving privacy. These components include a local computational engine that handles data processing, a physics-information integration subsystem that combines physical state calculations with information-theoretic optimization, a privacy preservation module that protects sensitive information, a knowledge integration component that manages biological data relationships, and a communication interface that enables secure information exchange between nodes. The federation manager coordinates all computational activities and manages resource allocations across the network while ensuring data privacy is maintained throughout the process. This architecture allows research institutions to collaboratively analyze complex, multi-species biological systems through integrated physics-based modeling and information-theoretic approaches while maintaining security and confidentiality.
Owner:QOMPLX INC

Federated Distributed Computational Graph Platform with Advanced Multi-Expert Integration and Adaptive Uncertainty Quantification for Precision Oncological Therapy

A federated distributed computational system enables secure oncological therapy optimization through multi-expert integration and advanced uncertainty quantification. The system implements a multi-expert integration framework that coordinates domain-specific knowledge through token-space communication for precision oncological treatment, while maintaining secure cross-institutional data exchange. The architecture coordinates multi-scale spatiotemporal synchronization across computational nodes, with each node containing local processing capabilities for fluorescence-guided imaging, uncertainty quantification, and expert knowledge integration. Through a distributed graph architecture, the system enables advanced fluorescence imaging with wavelength-specific targeting, multi-level uncertainty estimation combining epistemic and aleatoric approaches, and multi-scale tensor-based integration with adaptive dimensionality control. The system implements light cone search and planning for adaptive treatment strategy optimization, enabling medical institutions and research organizations to collaborate on complex oncological therapy projects while maintaining strict data privacy controls.
Owner:QOMPLX INC

Federated Distributed Computational Graph Platform for Genomic Medicine and Biological System Analysis

A federated distributed computational system enables secure, multi-institutional biological data analysis and genomic medicine through interconnected, decentralized nodes in a federated distributed graph architecture. A federation manager coordinates computational resource allocation, control and data flows, establishes privacy and security boundaries, implements multi-scale spatiotemporal analysis and simulation modeling, models cross-species or intrapopulation elements, and maintains cross-institutional knowledge relationships. Each node includes a local processing unit for biological data analysis, including multiomics and gene editing, privacy-preserving protocols for secure multi-party computation, a hierarchical knowledge graph for managing multi-domain biological relationships across spatial and temporal scales, and encrypted network connections. The system implements cross-species genetic analysis via phylogenetic integration, environmental response modeling through spatiotemporal tracking, and multi-scale tensor-based data integration with adaptive dimensionality control. This architecture enables research institutions to collaborate on complex biological analyses and genomic medicine applications while maintaining strict data privacy and security controls.
Owner:QOMPLX INC

Federated Distributed Computational Graph Platform for Oncological Therapy and Biological Systems Analysis with Neurosymbolic Deep Learning

A federated distributed computational system enables secure biological data analysis and genomic medicine through hybrid simulation capabilities. The system implements a hybrid simulation orchestrator that coordinates classical numerical simulations with machine learning models for biological system analysis, while maintaining secure cross-institutional data exchange. The architecture coordinates multi-scale spatiotemporal synchronization across computational nodes, with each node containing local processing capabilities for biological data analysis and privacy preservation protocols. The system implements cellular machinery assembly analysis, real-time patient data integration, and multi-modal image integration with spatiotemporal health data annotation. Through a distributed graph architecture, the system enables cross-species genetic analysis, environmental response modeling, and multi-scale tensor-based data integration with adaptive dimensionality control. The system implements real-time therapeutic response prediction through multi-modal data analysis, enabling research institutions to collaborate on complex biological analyses while maintaining strict data privacy controls.
Owner:QOMPLX INC

Benign and malignant nodule grading evaluation system based on large model fusion ultrasonic imaging and thyroid gene marker

PendingCN120452757AImage analysisHealth-index calculationMalignancyGold standard (test)
The invention discloses a benign and malignant nodule grading evaluation system based on large model fusion ultrasonic imaging and thyroid gene markers, which can organically fuse non-invasive examination and serological detection, can simulate and diagnose multi-grade risk probability information provided by a gold standard, realizes similar risk grading estimation in a non-invasive mode, and has a wide application prospect. The thyroid nodule risk assessment method can provide visual explanation conforming to clinical logic based on comprehensive information of iconography and molecular biology, can significantly improve the accuracy of thyroid nodule risk assessment, can also effectively improve clinical decision-making efficiency and patient credibility, and has important clinical application prospects. The system comprises a data acquisition module, an ultrasonic image feature extraction module, a gene marker feature extraction module, a multi-modal fusion and hierarchical reasoning module and a generation module.
Owner:THE FIRST AFFILIATED HOSPITAL OF MEDICAL COLLEGE OF XIAN JIAOTONG UNIV

Genomics-based Parkinson's disease drug target prediction model construction method

The invention discloses a genomics-based Parkinson's disease drug target prediction model construction method, and relates to the technical field of drug research and development, and the method comprises the following steps: collecting genomics, transcriptomics and proteomics data related to Parkinson's disease patients, and carrying out quality control and standardization processing; through differential expression analysis and function enrichment, key genes and signal pathways related to Parkinson's disease are identified, and a potential drug target range is determined. By integrating genomics, transcriptomics and proteomics data of patients with Parkinson's disease, molecular mechanisms related to Parkinson's disease can be comprehensively analyzed, multi-target combination is optimized in combination with the ant colony algorithm, the limitation that a traditional single-target model is difficult to capture complex disease network comprehensiveness is effectively overcome, and the method is suitable for popularization and application. The accuracy of target spot prediction is remarkably improved, a more reliable action target spot is provided for drug research and development, and the failure rate of clinical tests is reduced.
Owner:DALIAN MEDICAL UNIVERSITY

Intelligent breeding planning and decision-making method and system based on large model

The invention relates to the technical field of breeding planning, in particular to an intelligent breeding planning and decision-making method and system based on a large model. The method comprises the following steps: acquiring a multi-source breeding data set; constructing a structured breeding knowledge graph based on the multi-source breeding data set; performing breeding data association on the structured breeding knowledge graph according to a preset large model to generate a special breeding basic model; obtaining a breeding instruction input by a user; performing user semantic recognition on a breeding instruction input by a user to generate breeding semantic recognition data; inputting the breeding semantic recognition data into a breeding special basic model for breeding intention analysis, and generating user breeding intention data; and determining data information needing to be called based on the breeding intention data of the user, analyzing and screening to generate germplasm resource screening data and a breeding plan / breeding decision scheme. According to the method, the intelligence and operability of breeding planning are improved through integration of multi-source data, intelligent semantic recognition, combined genetic analysis and executable evaluation.
Owner:CHANGSHA BAIAOYUN DATA TECH CO LTD +1

Neural network prediction method for intestinal cancer immune response map, medium and equipment

The invention discloses an intestinal cancer immune response graph neural network prediction method, a medium and equipment, and the method comprises the steps: collecting pathological image information, immunodetection information and basic clinical information, extracting a tissue space distribution characteristic spectrum through a deep convolutional network, and constructing a graph neural network model in combination with an immunomarker expression characteristic matrix; spatial interaction characteristics of a tumor microenvironment are modeled by adopting a graph attention mechanism, finally a treatment response probability, an optimal treatment opportunity and an adverse reaction risk are predicted through a multi-task learning framework, and a clinical decision report containing a prediction response curve, a risk early warning threshold and a treatment time window suggestion is output. According to the method, through multi-modal data fusion and spatial interaction modeling, accurate prediction of intestinal cancer immunotherapy response is realized, and a more comprehensive reference basis is provided for clinical decision making.
Owner:FUJIAN UNIV OF TRADITIONAL CHINESE MEDICINE

Drug target affinity prediction method and system based on multi-scale protein attention mechanism

The invention discloses a drug target affinity prediction method and system based on a multi-scale protein attention mechanism, and belongs to the crossing field of bioinformatics and artificial intelligence. The method comprises the following steps: firstly, extracting protein sequence features through an ESM2 pre-training model, predicting that a three-dimensional structure is converted into a two-dimensional contact graph, and extracting spatial topological information in combination with a graph convolutional network; a two-dimensional attention mechanism is innovatively designed, structural features are taken as query vectors, sequence features are taken as key value pairs, and cross-modal feature fusion is realized by dynamically associating sequence semantics and spatial proximity relationships through multiple attention. Drug molecules are characterized by adopting MACCS fingerprints, are spliced with protein multi-modal features and then are optimized through a deep network, and finally an affinity value is output through a regression prediction module. According to the technology, the problem of protein heterogeneous data fusion is effectively solved, the generalization ability to unknown targets is remarkably improved, an efficient calculation tool is provided for new drug research and development and drug relocation, and the drug research and development cost can be reduced.
Owner:DALIAN MARITIME UNIVERSITY

Drug and target interaction prediction method based on multi-scale convolution feature fusion

The invention discloses a drug and target interaction prediction method based on multi-scale convolution feature fusion, which comprises the following steps: acquiring drug molecule data, target protein data and drug and target interaction data, constructing a drug molecule map according to the drug molecule data, and coding a target protein sequence according to the target protein data; inputting the drug molecular map into a model, and obtaining drug features through a multi-scale map convolutional network and a dynamic gating attention mechanism; inputting a target protein sequence into the model, and obtaining target features through hierarchical cavity convolution and a bidirectional gating cycle unit; through multi-head cross attention, the drug features are aligned with the target features, local and global cross-modal fusion is carried out, and drug target fusion features are obtained; based on the drug target fusion features, outputting a drug and target interaction prediction probability; and training the model according to the drug and target interaction data and the prediction probability, and applying the trained model to drug and target interaction prediction.
Owner:GUANGDONG UNIV OF EDUCATION

Life omics research method and device based on artificial intelligence, equipment and medium

The embodiment of the invention discloses a life omics research method and device based on artificial intelligence, and the method comprises the steps: carrying out the preprocessing of a project according to the intelligent interaction between a user and a system, and generating standardized data; and meanwhile, carrying out transfer learning on the large language model to construct a life science large language model. And according to the standardized data, decomposing a research target by adopting a life science big language model in cooperation with an intelligent agent, and generating an analysis plan. And based on the analysis plan, the intelligent agent is scheduled through the coordinator, and a hierarchical task is generated. And calling a multi-omics analysis tool by the intelligent agent to calculate and analyze the grading task, and outputting an analysis result. And based on data features, integrating analysis results through an integrated advanced model, and outputting a final report to complete the research of life omics. According to the embodiment of the invention, full-process automation and natural language interaction are realized, the standardization of data analysis and the repeatability of results are ensured, the research efficiency is remarkably improved, and the technical threshold is reduced.
Owner:BEIJING XIANYUN QIYUAN TECH CO LTD

Spatial omics multi-modal fusion method under single cell level

A spatial omics multi-modal fusion method under a single cell level comprises the following steps: extracting spatial morphological characteristics of differential expression genes and cell nucleuses from spatial transcriptome data, single cell sequencing data and histological images, and realizing field adaptation among different platforms by using a conditional variation auto-encoder. And based on a probability inference model, fusing spatial transcriptome expression, unicellular omics and morphological characteristics, and jointly inferring the type and gene expression level of each cell. A spatial cell network is constructed through a graph attention mechanism, and spatial diffusion and recognition of cell types in a full slice range are realized. In combination with a multi-omics enhancement module, undetected gene and protein expression is completed based on expression similarity, and prediction consistency is improved through spatial correction. According to the method, high-resolution reconstruction of single-cell multi-omics information in a three-dimensional space is realized, the information coverage and spatial resolution of spatial omics data are improved, and an efficient and low-cost solution is provided for spatial biology and precise medical research.
Owner:HARBIN INSTITUTE OF TECHNOLOGY (SHENZHEN) (INSTITUTE OF SCIENCE AND TECHNOLOGY INNOVATION HARBIN INSTITUTE OF TECHNOLOGY SHENZHEN)

Drug target activation and inhibition relation prediction method based on depth map neural network

The invention discloses a drug target activation and inhibition relation prediction method based on a depth map neural network, and aims to improve the modeling precision and prediction performance of an activation or inhibition action mechanism between a drug and a target. According to the method, on the basis of a fine-grained graph interaction modeling mechanism, multi-scale structural characteristics of drug molecules and three-dimensional space structural information of protein residue levels are fused, and a heterogeneous interaction graph between drugs and proteins is constructed. The method comprises the following steps: firstly, acquiring a drug-target sample with an activation / inhibition tag through a public database, predicting a protein structure by utilizing AlphaFold2, and constructing a protein residue map and a drug molecular map; multi-scale structure semantic representation is obtained through sub-graph decomposition, atomic-scale feature extraction and graph neural network coding of drug graph features; protein graph node features are combined with context embedding generated by a pre-training language model, DSSP coding, secondary structure spectrum and atomic structure features are constructed, and edge features are designed based on the geometrical relationship between residues. Then, based on constraints such as spatial distance and biochemical similarity, a fine-grained mapping relation between drug atoms and protein residues is established, an interaction graph is constructed, and coding is carried out through a GraphSAGE network; and finally, fusing the interacted multi-source embedding, and completing the prediction of the activation / suppression relationship through a multi-layer perceptron. A cross entropy loss function, an Adam optimizer and hyper-parameter grid search are adopted in model training; in the evaluation stage, five-fold cross validation and an independent test set are adopted, and indexes such as the accuracy rate, the recall rate, the F1 score, the specificity and the Morse correlation coefficient are used for comprehensively evaluating the performance of the model. Experimental results show that compared with an existing method, the method has the advantages that the prediction accuracy and mechanism interpretability are remarkably improved, and the method has good generalization ability and application prospects and is suitable for multiple fields of drug action mechanism research, new drug discovery and the like.
Owner:GUILIN UNIV OF ELECTRONIC TECH

Quantum and region sensing fused protein methylation site prediction method

ActiveCN120727109ABiostatisticsHybridisationProtein methylationNetwork model
The invention provides a protein methylation site prediction method fusing quantum and region perception, which comprises the following steps: step 1, acquiring a protein sequence as a data source, and respectively constructing a training set and an independent test set; 2, constructing a multi-modal feature for each protein sequence by adopting a three-way nested scattering network, and fusing the multi-modal features to obtain an optimized fusion feature tensor; and step 3, inputting the optimized fusion feature tensor into a RaQMeNet network model, and performing a methylation site prediction task. The performance indexes of the method are greatly superior to those of the prior art, and the method has higher adaptability, stability and interpretability, can be widely applied to a plurality of bioinformatics and biological medicine related fields such as protein function annotation, disease mechanism research and drug target discovery, and has good application prospects and commercial values.
Owner:NANTONG UNIV

Intelligent fermentation process regulation and control method and system based on multi-modal perception

The invention relates to the technical field of data processing. The fermentation process intelligent regulation and control method and system based on multi-modal perception are provided, and the method comprises the following steps: carrying out image feature extraction processing on microorganism image data to generate a morphological feature vector, and carrying out metabolic feature dimension reduction processing on metabonomics data to generate a metabolic feature matrix; performing time sequence alignment processing to generate a fusion feature matrix, and performing abnormal marking processing on the metabonomics data to generate abnormal marking data; carrying out correlation intensity calculation processing on the morphological change of the microorganisms and the concentration fluctuation of the metabolites to generate a dynamic correlation intensity curve; constructing a cross-dimensional anomaly recognition model and a multi-modal collaborative prediction model, and generating a regulation and control parameter suggested value; the parameters of the multi-modal collaborative prediction model are updated through a feedback learning mechanism, the feature fusion weight of the fusion feature matrix is optimized, the accuracy of anomaly detection and regulation decision is improved, and the risk of stability fluctuation in the fermentation process is reduced.
Owner:HEBEI YIJIAEN INTELLIGENT TECH CO LTD

Computer-implemented method, system, and non-transitory computer-readable medium for determining blood flow characteristics of a patient

To provide favorable systems and methods for determining blood flow characteristics of a patient.SOLUTION: One method includes: receiving, in an electronic storage medium, patient-specific image data of at least a portion of vasculature of the patient having geometric features at one or more points; generating a patient-specific reduced order model from the received image data, the patient-specific reduced order model comprising estimates of impedance values and a simplification of the geometric features at the one or more points of the vasculature of the patient; creating a feature vector comprising the estimates of impedance values and the geometric features for each of the one or more points of the patient-specific reduced order model; and determining blood flow characteristics at the one or more points of the patient-specific reduced order model using a machine learning algorithm trained to predict blood flow characteristics based on the created feature vectors at the one or more points.SELECTED DRAWING: None
Owner:HEARTFLOW INC

Microbial community dynamic monitoring method based on bioinformatics

The invention relates to the field of microbial communities, and discloses a bioinformatics-based microbial community dynamic monitoring method, which comprises the following steps: acquiring high-frequency acquisition data based on a trace sample, constructing a microbial data stream for time sequence analysis, and carrying out rapid metagenome marker amplification on each sampling unit in the data stream, obtaining a preliminary feature matrix; based on the co-occurrence frequency of the microbial functional genes in the preliminary feature matrix, constructing a multi-dimensional feature mapping graph; performing real-time mode recognition on the flora abundance change trend based on the dynamic fluctuation region; aiming at the key dynamic signal segment, adopting a distributed clustering method based on variation information entropy regulation and control to reconstruct the evolution trajectory of the flora, and generating a flora time sequence behavior vector set; and based on the flora time sequence behavior vector set, performing dynamic alignment with a pre-constructed reference model by using a multi-scale trend matching algorithm. The method has the advantages of high timeliness and automatic processing capability.
Owner:HUBEI UNIV OF EDUCATION

Intelligent breeding method for commercial crops based on big data analysis

The invention discloses an intelligent breeding method for commercial crops based on big data analysis, and relates to the technical field of agricultural breeding, the method comprises the following specific steps: seed multi-modal data acquisition and processing: acquiring physical characteristic data of seeds, acquiring physiological indexes and genome information data through biochemical experiments and gene sequencing, and determining the seed multi-modal data according to the physiological indexes and the genome information data; carrying out pretreatment on the raw materials; according to the method, after multi-modal data are integrated and preprocessed, a seed vigor accurate evaluation model is constructed by using deep learning and data fusion technologies, the seed vigor level can be measured more accurately, and meanwhile, the electric signal change of the early growth stage of crops is monitored in real time by using high-precision plant electric signal acquisition equipment, so that the accuracy of the seed vigor evaluation is improved. And a correlation model of the electric signal characteristics and multiple traits of crops is established, and fusion analysis is performed on seed vigor evaluation data and plant electric signal data, so that the breeding efficiency is greatly improved, and powerful support is provided for cultivation of high-quality varieties.
Owner:SHANXI ZHONGNONG NEW ERA TECH CO LTD

Inplanatable machine learning genome prediction method and device

The invention discloses an interpretable machine learning genome prediction method and device, belongs to the technical field of combination of biological breeding, biological information and machine learning, and utilizes an advanced machine learning algorithm to perform parameter optimization in combination with biological prior information. Through processing of multi-source data (genome, transcriptome and epigenetic data), dynamic feature engineering (PCA and PHATE dimensionality reduction) and organic combination of various machine learning models, and an automatic parameter adjustment framework based on a grid search and sparrow search algorithm, genome prediction precision and calculation efficiency are significantly improved; meanwhile, the interpretability of the model is realized based on the SHAP value, the SNP site contribution is quantified, a reference is provided for precise breeding, and the method is suitable for animal and plant molecular breeding and medical genetic analysis, and can accelerate genetic analysis of high-value characters, assist precise breeding decision and disease risk prediction, and promote leap-forward development from experience breeding to intelligent breeding.
Owner:CHINA AGRI UNIV

Transcriptomics spatial domain identification method

The invention discloses a transcriptomics spatial domain identification method, and belongs to the technical field of transcriptomics. The objective of the invention is to solve the problems of low data noise reduction precision and poor recognition effect of an existing spatial transcriptional spatial domain recognition method. The method comprises the following steps: firstly, obtaining an undirected neighborhood graph according to a gene expression matrix, obtaining embedded representation of the gene expression matrix by utilizing an encoder, obtaining a corresponding reconstruction matrix by utilizing a decoder, and further determining reconstruction loss; meanwhile, a ZINB model is used for fitting a reconstruction matrix, and a ZINB loss function is obtained; then, an augmented graph is constructed based on the undirected neighborhood graph, respective embedded matrixes are obtained through an encoder, the comparison loss of the undirected neighborhood graph and the comparison loss of the augmented graph are obtained through a comparison representation learning mechanism, and then the neighbor comparison loss is obtained; total target loss is obtained based on all losses, a joint optimization strategy is adopted for training, and after training of the whole model is completed, dimensionality reduction and spatial domain recognition are carried out on a generated reconstruction matrix.
Owner:NORTHEAST FORESTRY UNIV

Drug resistance prediction method and system based on comparative learning and multi-modal fusion

The invention discloses a drug resistance prediction method and system based on comparative learning and multi-modal fusion, and the method comprises the steps: firstly generating a molecular map and a molecular fingerprint based on the SMILES of a target drug, and extracting the molecular features of the drug through a comparative learning model constructed through combining a map attention network and a map convolution network; and then, acquiring protein expression, gene expression and metabolic expression data from the target tissue cells, extracting modal features through a deep convolutional network, a Transform encoder and a multi-dimensional attention network, and realizing adaptive fusion of the multi-modal features through a heterogeneous interactive attention mechanism. And finally, jointly inputting the fused multi-modal features and drug molecular features into a multi-layer sensor to realize high-precision prediction of the drug resistance of cells to drugs. By introducing a contrast learning and multi-modal feature fusion mechanism, the characterization capability and prediction precision of the model are effectively improved, and efficient and reliable support can be provided for drug screening and clinical decision making.
Owner:CHENGDU QILIN RONGZHI EXPLORATION INFORMATION TECHNOLOGY CO LTD

Large language model agent for automated gene-editing experiment design

A platform for automated design of gene-editing experiments includes one or more processing units and a non-transitory computer-readable storage device. The storage device contains instructions that, when executed, configure the processing units to perform a method. The method includes receiving a meta request with information about a requested gene-editing experiment, configuring an ordered list of tasks via a reasoning framework, and implementing tasks via a Task Executor module utilizing state machines. The Task Executor connects to external APIs, provides instructions to a User-Proxy Agent module, and receives user input. The User-Proxy Agent forms prompts based on current state instructions, user requests, interaction history, and API results to determine appropriate actions. The platform outputs recommendations responsive to the meta request.
Owner:THE TRUSTEES OF PRINCETON UNIV +1

Biohazard big data analysis and monitoring early warning system

PendingCN120452553AData visualisationBiostatisticsBiological hazardReliability engineering
The invention discloses a biological hazard big data analysis and monitoring early warning system, and relates to the technical field of public health safety, and an analysis subsystem in the system comprises a core logic module comprising a quality control unit, an error correction unit, an assembly unit and a box separation unit; the unit analysis module comprises a pathogen analysis unit, a resistance gene unit, a virulence evaluation unit and an evolution development unit; the flora integrated analysis module comprises a traceability analysis unit, a mutation characteristic unit, a propagation evolution unit and a transformation management and control unit; the early warning subsystem comprises a risk assessment and early warning system design unit, a dynamic research and propagation analysis unit, an assessment model construction unit, a pathogen evolution and function research unit, a toxicity and propagation risk comprehensive prediction unit, a pathogen risk monitoring network unit and an unknown pathogen and potential risk identification unit. According to the method, the biological hazard data can be comprehensively, efficiently and accurately analyzed.
Owner:BEIJING JIAOTONG UNIV

Systems and methods for dynamic-backbone protein-ligand structure prediction with multiscale generative diffusion models

PCT designated stageWO2025160309A1Data visualisationBiostatisticsCrystallographyMacromolecule formation
Systems and methods described herein include embodiments for generating a geometrical structure of a binding complex formed between a plurality of macromolecules, comprising: processing an input representation comprising a plurality of representations of the plurality of macromolecules to generate a geometry prior; sampling an initial geometrical structure of the binding complex based on the geometry prior; and processing, using a neural network, the initial geometrical structure to generate the geometrical structure of the binding complex formed by the plurality of macromolecules.
Owner:IAMBIC THERAPEUTICS INC +5

Utilizing machine learning models to synthesize perturbation data to generate perturbation heatmap graphical user interfaces

The present disclosure relates to systems, non-transitory computer-readable media, and methods for embedding perturbation data via a machine learning model and filtering, aligning, and aggregating the embeddings to generate a genome-wide perturbation database for real-time generation of perturbation heatmaps. In particular, in one or more embodiments, the disclosed systems can receive a plurality of perturbation images portraying cells from a plurality of wells corresponding to a plurality of cell perturbations. Further, the systems can generate, utilizing a machine learning model, a plurality of well-level image embeddings from the plurality of perturbation images. Moreover, the systems can align, utilizing an alignment model, the plurality of well-level image embeddings to generate aligned well-level image embeddings. Additionally, the systems can aggregate, according to perturbations of one or more perturbation experiments, the well-level image embeddings to generate perturbation-level image embeddings. Furthermore, the systems can generate perturbation comparisons utilizing the perturbation-level image embeddings.
Owner:RECURSION PHARMACEUTICALS INC

Spatial omics-based intestinal cancer metastasis prediction method and device, medium and equipment

The invention discloses an intestinal cancer metastasis prediction method and device based on spatial omics, a medium and equipment, and the method comprises the steps: collecting original multi-omics data, and carrying out modal alignment and quality control processing to obtain pre-processed multi-omics data comprising second spatial transcriptome data, second single-cell RNA sequencing data and second pathological image data; performing cross-modal semantic embedding on the second spatial transcriptome data based on the second single-cell RNA sequencing data to generate a spatial enhanced expression profile; performing multi-scale graph construction on the second spatial transcriptome data and the second pathological image data, and extracting spatial heterogeneity features; inputting the spatial enhancement expression spectrum and the spatial heterogeneity features into a pre-trained metastasis risk prediction model, and outputting a liver metastasis probability spatial heat map and a key driving feature list; and finally generating a clinical prediction report containing high-risk area positioning. According to the method, through dynamic optimization of spatial resolution and multi-scale feature collaborative modeling, the sensitivity of early transfer detection is remarkably improved.
Owner:FUJIAN UNIV OF TRADITIONAL CHINESE MEDICINE

Aquatic organism diversity rapid evaluation system and method based on GIS and eDNA technologies

The invention discloses an aquatic organism diversity rapid evaluation system and method based on GIS and eDNA technologies, and the method comprises the steps: selecting a plurality of sampling points in a target region to collect water samples, and integrating and processing the geographic information data of the sampling points and surrounding regions by adopting a GIS system; extracting eDNA from the collected water sample, performing amplification and sequencing on the eDNA by adopting a high-throughput sequencing technology, obtaining species and relative abundance of the species existing at the sampling point, and forming a species list; importing species distribution information corresponding to the species list into a GIS system, and obtaining a species distribution area and species types; according to the method, a species distribution prediction model is established, aquatic organism diversity change trends of the hot spot area and the potential ecological threat area are monitored in real time, an evaluation report and protection suggestions are formed, and protection measures are updated in time, so that the data acquisition and processing efficiency is improved, and the accuracy of species identification and the comprehensiveness of diversity evaluation are enhanced; and a real-time monitoring and early warning mechanism is provided.
Owner:SICHUAN XINHE QINGYUAN TECHNOLOGY CO LTD