Applications of exosomal miR-106b-3p, miR-10a-3p, etc. in the diagnosis of lung cancer
By detecting the differences in expression of specific miRNA markers in exosomes, non-invasive lung cancer diagnosis is used using kits and PCR technology, the problem of low detection sensitivity of early lung cancer in the prior art is solved, and the early diagnosis effect with high sensitivity and high specificity is achieved.
Patent Information
- Application Number
- CN202210214639.4
- Authority / Receiving Office
- CN · China
- Patent Type
- Patents(China)
- Current Assignee / Owner
- Priority Date
- 2020-03-30
- Filing Date
- 2020-05-11
- Publication Date
- 2025-07-04
- Estimated Expiration
- 2040-05-11
AI Technical Summary
The existing non-invasive lung cancer detection methods are not sensitive in early diagnosis, making it difficult to effectively distinguish benign and malignant lung nodules. It is urgent to develop high-sensitivity non-invasive detection methods.
Specific miRNA markers in exosomes (such as let-7a-3p, let-7f-2, miR-106b-3p, etc.) are used as diagnostic markers. By detecting the expression differences of exosome miRNA, early diagnosis of lung cancer is performed using kits and devices, and detection is carried out in combination with PCR technology.
It has achieved high sensitivity and high specificity of non-invasive lung cancer early diagnosis, providing important early diagnosis and recurrence monitoring value, with extremely superior diagnostic performance, with negative predictive values and sensitivity reaching 90.00% and 93.33%.
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Figure CN115287350B_ABST
Abstract
Description
[0001] This application is a divisional application. The divisional application number is 202111059955.0, the application date is May 11, 2020, and the invention title is "Kit, Device and Method for Lung Cancer Diagnosis". Technical Field
[0002] The present invention relates to the field of medical diagnosis, and particularly to a diagnostic kit, device and method for early lung cancer. Background Art
[0003] With the application of low-dose spiral CT, more and more imaging findings of pulmonary nodules (single lesions within the pulmonary interstitium <3 cm and without associated atelectasis or lymphadenopathy) have been discovered. However, not all pulmonary nodules are malignant, and the differential diagnosis of benign and malignant pulmonary nodules has always been a difficult point in the clinical diagnosis and treatment of thoracic surgery. At present, non-invasive detection methods such as plasma circulating tumor cells and circulating tumor-free DNA are also used, but their detection sensitivity in the diagnosis of early lung cancer is not high; therefore, there is an urgent need to develop a method for non-invasive early detection of lung cancer with high sensitivity. Summary of the Invention
[0004] The present invention provides a reagent, device and method for non-invasive early lung cancer diagnosis based on exosomes.
[0005] On the one hand, the present invention provides a kit for lung cancer diagnosis, including primers and probes for detecting exosomal miRNA markers, and the exosomal miRNA markers include one or more of let-7a-3p, let-7f-2, miR-106b-3p, miR-10a-3p, miR-10a-5p, miR-125a-5p, miR-1294, miR-19a-3p, miR-22-3p, miR-29a-3p, miR-30e-5p, miR-3158-3p, miR-330-5p, miR-3605-3p, miR-3615, miR-378h, miR-425-3p, miR-450b-5p, miR-4746-5p, miR-483-3p, miR-502-3p, miR-550a-5p, miR-651-5p, miR-7706, miR-885-5p.
[0006] Preferably, the exosomal miRNA markers are one or a combination of miR-3615, miR-502-3p, miR-450b-5p, miR-4746-5p, miR-10a-5p, miR-106b-3p, miR-125a-5p, miR-885-5p.
[0007] Preferably, the exosomal miRNA markers are a combination of miR-106-3p, miR-125a-5p, and miR-3615.
[0008] Preferably, the exosomal miRNA markers are a combination of miR-106b-3p, miR-3615, and miR-450b-5p.
[0009] Preferably, the exosomal miRNA markers are a combination of miR-106b-3p, miR-125a-5p, miR-3615, miR-450b-5p, and miR-885-5p.
[0010] Preferably, the exosomal miRNA markers are a combination of miR-106b-3p, miR-10a-3p, miR-125a-5p, miR-3615, and miR-450b-5p.
[0011] Preferably, the exosome source includes one or more of blood, saliva, and sputum.
[0012] Preferably, the primers and probes include:
[0013] Reverse transcription primer, PCR primer, and probe for detecting let-7a-3p: The reverse transcription primer for let-7a-3p has the nucleotide sequence shown in SEQ ID NO: 1, the PCR upstream primer has the nucleotide sequence shown in SEQ ID NO: 2, the downstream primer has the nucleotide sequence shown in SEQ ID NO: 80, and the probe has the nucleotide sequence shown in SEQ ID NO: 3;
[0014] Reverse transcription primer, PCR primer, and probe for detecting let-7f-2: The reverse transcription primer for let-7f-2 has the nucleotide sequence shown in SEQ ID NO: 4, the PCR upstream primer has the nucleotide sequence shown in SEQ ID NO: 5, the downstream primer has the nucleotide sequence shown in SEQ ID NO: 80, and the probe has the nucleotide sequence shown in SEQ ID NO: 6;
[0015] Reverse transcription primer, PCR primer, and probe for detecting miR-106b-3p: The reverse transcription primer for miR-106b-3p has the nucleotide sequence shown in SEQ ID NO: 7, the PCR upstream primer has the nucleotide sequence shown in SEQ ID NO: 8, the downstream primer has the nucleotide sequence shown in SEQ ID NO: 80, and the probe has the nucleotide sequence shown in SEQ ID NO: 9;
[0016] Reverse transcription primers, PCR primers and probes for detecting miR-10a-3p: The reverse transcription primer of miR-10a-3p has the nucleotide sequence shown in SEQ ID NO: 10, the upstream PCR primer has the nucleotide sequence shown in SEQ ID NO: 11, the downstream primer has the nucleotide sequence shown in SEQ ID NO: 80, and the probe has the nucleotide sequence shown in SEQ ID NO: 12;
[0017] Reverse transcription primers, PCR primers and probes for detecting miR-10a-5p: The reverse transcription primer of miR-10a-5p has the nucleotide sequence shown in SEQ ID NO: 13, the upstream PCR primer has the nucleotide sequence shown in SEQ ID NO: 14, the downstream primer has the nucleotide sequence shown in SEQ ID NO: 80, and the probe has the nucleotide sequence shown in SEQ ID NO: 15;
[0018] Reverse transcription primers, PCR primers and probes for detecting miR-125a-5p: The reverse transcription primer of miR-125a-5p has the nucleotide sequence shown in SEQ ID NO: 16, the upstream PCR primer has the nucleotide sequence shown in SEQ ID NO: 17, the downstream primer has the nucleotide sequence shown in SEQ ID NO: 80, and the probe has the nucleotide sequence shown in SEQ ID NO: 18;
[0019] Reverse transcription primers, PCR primers and probes for detecting miR-1294: The reverse transcription primer of miR-1294 has the nucleotide sequence shown in SEQ ID NO: 19, the upstream PCR primer has the nucleotide sequence shown in SEQ ID NO: 20, the downstream primer has the nucleotide sequence shown in SEQ ID NO: 80, and the probe has the nucleotide sequence shown in SEQ ID NO: 21;
[0020] Reverse transcription primers, PCR primers and probes for detecting miR-19a-3p: The reverse transcription primer of miR-19a-3p has the nucleotide sequence shown in SEQ ID NO: 22, the upstream PCR primer has the nucleotide sequence shown in SEQ ID NO: 23, the downstream primer has the nucleotide sequence shown in SEQ ID NO: 80, and the probe has the nucleotide sequence shown in SEQ ID NO: 24;
[0021] Reverse transcription primers, PCR primers and probes for detecting miR-22-3p: The reverse transcription primer of miR-22-3p has the nucleotide sequence shown in SEQ ID NO: 25, the upstream PCR primer has the nucleotide sequence shown in SEQ ID NO: 26, the downstream primer has the nucleotide sequence shown in SEQ ID NO: 80, and the probe has the nucleotide sequence shown in SEQ ID NO: 27;
[0022] Reverse transcription primers, PCR primers and probes for detecting miR-29a-3p: The reverse transcription primer for miR-29a-3p has the nucleotide sequence shown in SEQ ID NO: 28, the upstream PCR primer has the nucleotide sequence shown in SEQ ID NO: 29, the downstream primer has the nucleotide sequence shown in SEQ ID NO: 80, and the probe has the nucleotide sequence shown in SEQ ID NO: 30;
[0023] Reverse transcription primers, PCR primers and probes for detecting miR-30e-5p: The reverse transcription primer for miR-30e-5p has the nucleotide sequence shown in SEQ ID NO: 31, the upstream PCR primer has the nucleotide sequence shown in SEQ ID NO: 32, the downstream primer has the nucleotide sequence shown in SEQ ID NO: 80, and the probe has the nucleotide sequence shown in SEQ ID NO: 33;
[0024] Reverse transcription primers, PCR primers and probes for detecting miR-3158-3p: The reverse transcription primer for miR-3158-3p has the nucleotide sequence shown in SEQ ID NO: 34, the upstream PCR primer has the nucleotide sequence shown in SEQ ID NO: 35, the downstream primer has the nucleotide sequence shown in SEQ ID NO: 80, and the probe has the nucleotide sequence shown in SEQ ID NO: 36;
[0025] Reverse transcription primers, PCR primers and probes for detecting miR-330-5p: The reverse transcription primer for miR-330-5p has the nucleotide sequence shown in SEQ ID NO: 37, the upstream PCR primer has the nucleotide sequence shown in SEQ ID NO: 38, the downstream primer has the nucleotide sequence shown in SEQ ID NO: 80, and the probe has the nucleotide sequence shown in SEQ ID NO: 39;
[0026] Reverse transcription primers, PCR primers and probes for detecting miR-3605-3p: The reverse transcription primer for miR-3605-3p has the nucleotide sequence shown in SEQ ID NO: 40, the upstream PCR primer has the nucleotide sequence shown in SEQ ID NO: 41, the downstream primer has the nucleotide sequence shown in SEQ ID NO: 80, and the probe has the nucleotide sequence shown in SEQ ID NO: 42;
[0027] Reverse transcription primers, PCR primers and probes for detecting miR-3615: The reverse transcription primer for miR-3615 has the nucleotide sequence shown in SEQ ID NO: 43, the upstream PCR primer has the nucleotide sequence shown in SEQ ID NO: 44, the downstream primer has the nucleotide sequence shown in SEQ ID NO: 80, and the probe has the nucleotide sequence shown in SEQ ID NO: 45;
[0028] Reverse transcription primers, PCR primers and probes for detecting miR-378h: The reverse transcription primer of miR-378h has the nucleotide sequence shown in SEQ ID NO: 46, the upstream PCR primer has the nucleotide sequence shown in SEQ ID NO: 47, the downstream primer has the nucleotide sequence shown in SEQ ID NO: 80, and the probe has the nucleotide sequence shown in SEQ ID NO: 48;
[0029] Reverse transcription primers, PCR primers and probes for detecting miR-425-3p: The reverse transcription primer of miR-425-3p has the nucleotide sequence shown in SEQ ID NO: 49, the upstream PCR primer has the nucleotide sequence shown in SEQ ID NO: 50, the downstream primer has the nucleotide sequence shown in SEQ ID NO: 80, and the probe has the nucleotide sequence shown in SEQ ID NO: 51;
[0030] Reverse transcription primers, PCR primers and probes for detecting miR-450b-5p: The reverse transcription primer of miR-450b-5p has the nucleotide sequence shown in SEQ ID NO: 52, the upstream PCR primer has the nucleotide sequence shown in SEQ ID NO: 53, the downstream primer has the nucleotide sequence shown in SEQ ID NO: 80, and the probe has the nucleotide sequence shown in SEQ ID NO: 54;
[0031] Reverse transcription primers, PCR primers and probes for detecting miR-4746-5p: The reverse transcription primer of miR-4746-5p has the nucleotide sequence shown in SEQ ID NO: 55, the upstream PCR primer has the nucleotide sequence shown in SEQ ID NO: 56, the downstream primer has the nucleotide sequence shown in SEQ ID NO: 80, and the probe has the nucleotide sequence shown in SEQ ID NO: 57;
[0032] Reverse transcription primers, PCR primers and probes for detecting miR-483-3p: The reverse transcription primer of miR-483-3p has the nucleotide sequence shown in SEQ ID NO: 58, the upstream PCR primer has the nucleotide sequence shown in SEQ ID NO: 59, the downstream primer has the nucleotide sequence shown in SEQ ID NO: 80, and the probe has the nucleotide sequence shown in SEQ ID NO: 60;
[0033] Reverse transcription primers, PCR primers and probes for detecting miR-502-3p: The reverse transcription primer of miR-502-3p has the nucleotide sequence shown in SEQ ID NO: 61, the upstream PCR primer has the nucleotide sequence shown in SEQ ID NO: 62, the downstream primer has the nucleotide sequence shown in SEQ ID NO: 80, and the probe has the nucleotide sequence shown in SEQ ID NO: 63;
[0034] Reverse transcription primers, PCR primers and probes for detecting miR-550a-5p: The reverse transcription primer for miR-550a-5p has the nucleotide sequence shown in SEQ ID NO: 64, the PCR upstream primer has the nucleotide sequence shown in SEQ ID NO: 65, the downstream primer has the nucleotide sequence shown in SEQ ID NO: 80, and the probe has the nucleotide sequence shown in SEQ ID NO: 66;
[0035] Reverse transcription primers, PCR primers and probes for detecting miR-651-5p: The reverse transcription primer for miR-651-5p has the nucleotide sequence shown in SEQ ID NO: 67, the PCR upstream primer has the nucleotide sequence shown in SEQ ID NO: 68, the downstream primer has the nucleotide sequence shown in SEQ ID NO: 80, and the probe has the nucleotide sequence shown in SEQ ID NO: 69;
[0036] Reverse transcription primers, PCR primers and probes for detecting miR-7706: The reverse transcription primer for miR-7706 has the nucleotide sequence shown in SEQ ID NO: 70, the PCR upstream primer has the nucleotide sequence shown in SEQ ID NO: 71, the downstream primer has the nucleotide sequence shown in SEQ ID NO: 80, and the probe has the nucleotide sequence shown in SEQ ID NO: 72;
[0037] Reverse transcription primers, PCR primers and probes for detecting miR-885-5p: The reverse transcription primer for miR-885-5p has the nucleotide sequence shown in SEQ ID NO: 73, the PCR upstream primer has the nucleotide sequence shown in SEQ ID NO: 74, the downstream primer has the nucleotide sequence shown in SEQ ID NO: 80, and the probe has the nucleotide sequence shown in SEQ ID NO: 75.
[0038] On the other hand, the present invention provides a device for diagnosing lung cancer, including reagents for detecting exosomal miRNA markers, and the exosomal miRNA markers include one or more of let-7a-3p, let-7f-2, miR-106b-3p, miR-10a-3p, miR-10a-5p, miR-125a-5p, miR-1294, miR-19a-3p, miR-22-3p, miR-29a-3p, miR-30e-5p, miR-3158-3p, miR-330-5p, miR-3605-3p, miR-3615, miR-378h, miR-425-3p, miR-450b-5p, miR-4746-5p, miR-483-3p, miR-502-3p, miR-550a-5p, miR-651-5p, miR-7706, miR-885-5p.
[0039] On the other hand, the present invention provides a method for diagnosing lung cancer, including detecting the specificity of exosomal miRNA markers, and the exosomal miRNA markers include one or more of let-7a-3p, let-7f-2, miR-106b-3p, miR-10a-3p, miR-10a-5p, miR-125a-5p, miR-1294, miR-19a-3p, miR-22-3p, miR-29a-3p, miR-30e-5p, miR-3158-3p, miR-330-5p, miR-3605-3p, miR-3615, miR-378h, miR-425-3p, miR-450b-5p, miR-4746-5p, miR-483-3p, miR-502-3p, miR-550a-5p, miR-651-5p, miR-7706, miR-885-5p.
[0040] The present invention provides a non-invasive method for diagnosing lung cancer based on exosomes, which has high sensitivity and high specificity in lung cancer, provides important value for the early diagnosis and recurrence monitoring of lung cancer, and is of great help to the prevention and treatment of lung cancer in China. Furthermore, among them, 5 miRNA markers (the combined AUC can reach up to 0.951, and its negative predictive value is 90.32%, sensitivity is 90.00%, and specificity is 93.33%) have extremely excellent diagnostic performance. BRIEF DESCRIPTION OF THE DRAWINGS
[0041] Figure 1 It is the result of electron microscopy identification of exosomes.
[0042] Figure 2 It is the ROC curve of miR-3615 for detecting lung cancer alone.
[0043] Figure 3 It is the ROC curve of miR-502-3p for detecting lung cancer alone.
[0044] Figure 4 It is the ROC curve of miR-450b-5p for detecting lung cancer alone.
[0045] Figure 5 It is the ROC curve of miR-4746-5p for detecting lung cancer alone.
[0046] Figure 6 It is the ROC curve of miR-10a-5p for detecting lung cancer alone.
[0047] Figure 7 It is the ROC curve of the combination of miR-106-3p + miR-125a-5p + miR-3615 for detecting lung cancer.
[0048] Figure 8 It is the ROC curve of the combined detection of lung cancer by miR-106b-3p + miR-3615 + miR-450b-5p.
[0049] Figure 9 It is the ROC curve of the combined detection of lung cancer by miR-106b-3p + miR-125a-5p + miR-3615 + miR-450b-5p + miR-885-5.
[0050] Figure 10 It is the ROC curve of the combined detection of lung cancer by miR-106b-3p + miR-10a-3p + miR-125a-5p + miR-3615 + miR-450b-5p.
[0051] Figure 11 It is the ROC curve of the combined detection of lung cancer by miR-106b-3P + miR-10a-5p + miR-125a-5p + miR-3615 + miR-450b-5p (using U6 as a reference). Specific implementation mode
[0052] Extracellular vesicles (EVs; hereinafter vesicles all represent extracellular vesicles) refer to vesicular bodies with a bilayer membrane structure that are shed from the cell membrane or secreted by cells, with diameters ranging from 30 to 1000 nm. Extracellular vesicles are mainly composed of microvesicles (MVs) and exosomes. Microvesicles are small vesicles shed from the cell membrane after cell activation or injury. Due to the unique biological characteristics of extracellular vesicles, they have important significance in disease diagnosis, especially exosomes among them.
[0053] Exosomes are membranous small vesicles with a diameter between 30 and 150 nm that are secreted into the extracellular environment after the fusion of intracellular multivesicular bodies with the cell membrane. They are important mediators of intercellular information transmission and play important roles in antigen presentation, apoptosis, inflammatory response, tumorigenesis, development and metastasis. They are widely distributed in body fluids, including blood, saliva, urine, milk, and pleural and ascitic fluids; they contain various inclusions such as DNA, RNA, and proteins and can be used as non-invasive diagnostic markers for various diseases such as tumors. miRNA is the most abundant nucleic acid component in exosomes, so exosomal miRNA has the potential for early diagnosis of lung cancer.
[0054] The kit, device, and method provided by the present invention are used to discover, through experimental research, one or more of the miRNAs that are significantly differentially expressed in the exosomes of patients with early-stage lung cancer as markers for diagnosing early-stage lung cancer.
[0055] The miRNAs with significant differential expression include: let-7a-3p, let-7f-2, miR-106b-3p, miR-10a-3p, miR-10a-5p, miR-125a-5p, miR-1294, miR-19a-3p, miR-22-3p, miR-29a-3p, miR-30e-5p, miR-3158-3p, miR-330-5p, miR-3605-3p, miR-3615, miR-378h, miR-425-3p, miR-450b-5p, miR-4746-5p, miR-483-3p, miR-502-3p, miR-550a-5p, miR-651-5p, miR-7706, miR-885-5p.
[0056] In some preferred embodiments, the miRNA molecular markers with significant differential expression are used in combination, and a preferred combination is: one or more combinations of miR-3615, miR-502-3p, miR-450b-5p, miR-4746-5p, miR-10a-5p, miR-106b-3p, miR-125a-5p, miR-885-5p. The above combination can provide a better basis for the early diagnosis of lung cancer and predict the disease risk.
[0057] In addition, the kit for diagnosing lung cancer of the present invention includes primers and probes for detecting the above-mentioned exosomal miRNA markers. The primers and probes for detecting exosomal miRNA markers include:
[0058] Reverse transcription primer, PCR primer, and probe for detecting let-7a-3p: The reverse transcription primer of let-7a-3p has the nucleotide sequence shown in SEQ ID NO: 1, the PCR upstream primer specifically has the nucleotide sequence shown in SEQ ID NO: 2, the downstream primer specifically has the nucleotide sequence shown in SEQ ID NO: 80, and the probe has the nucleotide sequence shown in SEQ ID NO: 3;
[0059] Reverse transcription primer, PCR primer, and probe for detecting let-7f-2: The reverse transcription primer of let-7f-2 has the nucleotide sequence shown in SEQ ID NO: 4, the PCR upstream primer specifically has the nucleotide sequence shown in SEQ ID NO: 5, the downstream primer specifically has the nucleotide sequence shown in SEQ ID NO: 80, and the probe has the nucleotide sequence shown in SEQ ID NO: 6;
[0060] Reverse transcription primers, PCR primers and probes for detecting miR-106b-3p: The reverse transcription primer for miR-106b-3p has the nucleotide sequence shown in SEQ ID NO: 7, the PCR upstream primer specifically has the nucleotide sequence shown in SEQ ID NO: 8, the downstream primer specifically has the nucleotide sequence shown in SEQ ID NO: 80, and the probe has the nucleotide sequence shown in SEQ ID NO: 9;
[0061] Reverse transcription primers, PCR primers and probes for detecting miR-10a-3p: The reverse transcription primer for miR-10a-3p has the nucleotide sequence shown in SEQ ID NO: 10, the PCR upstream primer specifically has the nucleotide sequence shown in SEQ ID NO: 11, the downstream primer specifically has the nucleotide sequence shown in SEQ ID NO: 80, and the probe has the nucleotide sequence shown in SEQ ID NO: 12;
[0062] Reverse transcription primers, PCR primers and probes for detecting miR-10a-5p: The reverse transcription primer for miR-10a-5p has the nucleotide sequence shown in SEQ ID NO: 13, the PCR upstream primer specifically has the nucleotide sequence shown in SEQ ID NO: 14, the downstream primer specifically has the nucleotide sequence shown in SEQ ID NO: 80, and the probe has the nucleotide sequence shown in SEQ ID NO: 15;
[0063] Reverse transcription primers, PCR primers and probes for detecting miR-125a-5p: The reverse transcription primer for miR-125a-5p has the nucleotide sequence shown in SEQ ID NO: 16, the PCR upstream primer specifically has the nucleotide sequence shown in SEQ ID NO: 17, the downstream primer specifically has the nucleotide sequence shown in SEQ ID NO: 80, and the probe has the nucleotide sequence shown in SEQ ID NO: 18;
[0064] Reverse transcription primers, PCR primers and probes for detecting miR-1294: The reverse transcription primer for miR-1294 has the nucleotide sequence shown in SEQ ID NO: 19, the PCR upstream primer specifically has the nucleotide sequence shown in SEQ ID NO: 20, the downstream primer specifically has the nucleotide sequence shown in SEQ ID NO: 80, and the probe has the nucleotide sequence shown in SEQ ID NO: 21;
[0065] Reverse transcription primers, PCR primers and probes for detecting miR-19a-3p: The reverse transcription primer for miR-19a-3p has the nucleotide sequence shown in SEQ ID NO: 22, the PCR upstream primer specifically has the nucleotide sequence shown in SEQ ID NO: 23, the downstream primer specifically has the nucleotide sequence shown in SEQ ID NO: 80, and the probe has the nucleotide sequence shown in SEQ ID NO: 24;
[0066] Reverse transcription primers, PCR primers and probes for detecting miR-22-3p: The reverse transcription primer of miR-22-3p has the nucleotide sequence shown in SEQ ID NO: 25, the PCR upstream primer specifically has the nucleotide sequence shown in SEQ ID NO: 26, the downstream primer specifically has the nucleotide sequence shown in SEQ ID NO: 80, and the probe has the nucleotide sequence shown in SEQ ID NO: 27;
[0067] Reverse transcription primers, PCR primers and probes for detecting miR-29a-3p: The reverse transcription primer of miR-29a-3p has the nucleotide sequence shown in SEQ ID NO: 28, the PCR upstream primer specifically has the nucleotide sequence shown in SEQ ID NO: 29, the downstream primer specifically has the nucleotide sequence shown in SEQ ID NO: 80, and the probe has the nucleotide sequence shown in SEQ ID NO: 30;
[0068] Reverse transcription primers, PCR primers and probes for detecting miR-30e-5p: The reverse transcription primer of miR-30e-5p has the nucleotide sequence shown in SEQ ID NO: 31, the PCR upstream primer specifically has the nucleotide sequence shown in SEQ ID NO: 32, the downstream primer specifically has the nucleotide sequence shown in SEQ ID NO: 80, and the probe has the nucleotide sequence shown in SEQ ID NO: 33;
[0069] Reverse transcription primers, PCR primers and probes for detecting miR-3158-3p: The reverse transcription primer of miR-3158-3p has the nucleotide sequence shown in SEQ ID NO: 34, the PCR upstream primer specifically has the nucleotide sequence shown in SEQ ID NO: 35, the downstream primer specifically has the nucleotide sequence shown in SEQ ID NO: 80, and the probe has the nucleotide sequence shown in SEQ ID NO: 36;
[0070] Reverse transcription primers, PCR primers and probes for detecting miR-330-5p: The reverse transcription primer of miR-330-5p has the nucleotide sequence shown in SEQ ID NO: 37, the PCR upstream primer specifically has the nucleotide sequence shown in SEQ ID NO: 38, the downstream primer specifically has the nucleotide sequence shown in SEQ ID NO: 80, and the probe has the nucleotide sequence shown in SEQ ID NO: 39;
[0071] Reverse transcription primers, PCR primers and probes for detecting miR-3605-3p: The reverse transcription primer of miR-3605-3p has the nucleotide sequence shown in SEQ ID NO: 40, the PCR upstream primer specifically has the nucleotide sequence shown in SEQ ID NO: 41, the downstream primer specifically has the nucleotide sequence shown in SEQ ID NO: 80, and the probe has the nucleotide sequence shown in SEQ ID NO: 42;
[0072] Reverse transcription primers, PCR primers and probes for detecting miR-3615: The reverse transcription primer of miR-3615 has the nucleotide sequence shown in SEQ ID NO: 43, the upstream PCR primer specifically has the nucleotide sequence shown in SEQ ID NO: 44, the downstream primer specifically has the nucleotide sequence shown in SEQ ID NO: 80, and the probe has the nucleotide sequence shown in SEQ ID NO: 45;
[0073] Reverse transcription primers, PCR primers and probes for detecting miR-378h: The reverse transcription primer of miR-378h has the nucleotide sequence shown in SEQ ID NO: 46, the upstream PCR primer specifically has the nucleotide sequence shown in SEQ ID NO: 47, the downstream primer specifically has the nucleotide sequence shown in SEQ ID NO: 80, and the probe has the nucleotide sequence shown in SEQ ID NO: 48;
[0074] Reverse transcription primers, PCR primers and probes for detecting miR-425-3p: The reverse transcription primer of miR-425-3p has the nucleotide sequence shown in SEQ ID NO: 49, the upstream PCR primer specifically has the nucleotide sequence shown in SEQ ID NO: 50, the downstream primer specifically has the nucleotide sequence shown in SEQ ID NO: 80, and the probe has the nucleotide sequence shown in SEQ ID NO: 51;
[0075] Reverse transcription primers, PCR primers and probes for detecting miR-450b-5p: The reverse transcription primer of miR-450b-5p has the nucleotide sequence shown in SEQ ID NO: 52, the upstream PCR primer specifically has the nucleotide sequence shown in SEQ ID NO: 53, the downstream primer specifically has the nucleotide sequence shown in SEQ ID NO: 80, and the probe has the nucleotide sequence shown in SEQ ID NO: 54;
[0076] Reverse transcription primers, PCR primers and probes for detecting miR-4746-5p: The reverse transcription primer of miR-4746-5p has the nucleotide sequence shown in SEQ ID NO: 55, the upstream PCR primer specifically has the nucleotide sequence shown in SEQ ID NO: 56, the downstream primer specifically has the nucleotide sequence shown in SEQ ID NO: 80, and the probe has the nucleotide sequence shown in SEQ ID NO: 57;
[0077] Reverse transcription primers, PCR primers and probes for detecting miR-483-3p: The reverse transcription primer of miR-483-3p has the nucleotide sequence shown in SEQ ID NO: 58, the upstream PCR primer specifically has the nucleotide sequence shown in SEQ ID NO: 59, the downstream primer specifically has the nucleotide sequence shown in SEQ ID NO: 80, and the probe has the nucleotide sequence shown in SEQ ID NO: 60;
[0078] Reverse transcription primers, PCR primers and probes for detecting miR-502-3p: The reverse transcription primer of miR-502-3p has the nucleotide sequence shown in SEQ ID NO: 61, the PCR upstream primer specifically has the nucleotide sequence shown in SEQ ID NO: 62, the downstream primer specifically has the nucleotide sequence shown in SEQ ID NO: 80, and the probe has the nucleotide sequence shown in SEQ ID NO: 63;
[0079] Reverse transcription primers, PCR primers and probes for detecting miR-550a-5p: The reverse transcription primer of miR-550a-5p has the nucleotide sequence shown in SEQ ID NO: 64, the PCR upstream primer specifically has the nucleotide sequence shown in SEQ ID NO: 65, the downstream primer specifically has the nucleotide sequence shown in SEQ ID NO: 80, and the probe has the nucleotide sequence shown in SEQ ID NO: 66;
[0080] Reverse transcription primers, PCR primers and probes for detecting miR-651-5p: The reverse transcription primer of miR-651-5p has the nucleotide sequence shown in SEQ ID NO: 67, the PCR upstream primer specifically has the nucleotide sequence shown in SEQ ID NO: 68, the downstream primer specifically has the nucleotide sequence shown in SEQ ID NO: 80, and the probe has the nucleotide sequence shown in SEQ ID NO: 69;
[0081] Reverse transcription primers, PCR primers and probes for detecting miR-7706: The reverse transcription primer of miR-7706 has the nucleotide sequence shown in SEQ ID NO: 70, the PCR upstream primer specifically has the nucleotide sequence shown in SEQ ID NO: 71, the downstream primer specifically has the nucleotide sequence shown in SEQ ID NO: 80, and the probe has the nucleotide sequence shown in SEQ ID NO: 72;
[0082] Reverse transcription primers, PCR primers and probes for detecting miR-885-5p: The reverse transcription primer of miR-885-5p has the nucleotide sequence shown in SEQ ID NO: 73, the PCR upstream primer specifically has the nucleotide sequence shown in SEQ ID NO: 74, the downstream primer specifically has the nucleotide sequence shown in SEQ ID NO: 80, and the probe has the nucleotide sequence shown in SEQ ID NO: 75;
[0083] Reverse transcription primers, PCR primers and probes for detecting the internal reference U6: The reverse transcription primer of U6 has the nucleotide sequence shown in SEQ ID NO: 78, the PCR upstream primer specifically has the nucleotide sequence shown in SEQ ID NO: 76, the downstream primer specifically has the nucleotide sequence shown in SEQ ID NO: 78, and the probe has the nucleotide sequence shown in SEQ ID NO: 79. The nucleotide sequences of the primers and probes are shown in Table 1.
[0084] Table 1
[0085]
[0086]
[0087]
[0088] Furthermore, the exosome source includes one or more of blood, saliva, and sputum.
[0089] The kits, devices, and methods of the present invention are applicable to individuals who are at high risk of lung cancer, normal individuals, and patients after lung cancer surgery.
[0090] The technical solutions of the present invention will be described completely and clearly below in conjunction with the embodiments. The described embodiments are part of the embodiments of the present invention, rather than all of the examples. Based on the embodiments of the present invention, other embodiments obtained by those of ordinary skill in the art without creative efforts all fall within the scope of protection of the present invention.
[0091] The experimental methods in the following embodiments are all conventional methods unless otherwise specified. The materials, reagents, etc. used in the following embodiments can all be obtained from commercial channels unless otherwise specified.
[0092] In order to screen for exosome markers related to the diagnosis of lung cancer, 50 early-stage lung cancer patients and 72 controls were selected. Blood samples of no less than 10 ml were taken and plasma was separated. The exosomes in the plasma were separated by the classical ultracentrifugation method and RNA was extracted. The obtained RNA was subjected to RNA library construction and sequencing respectively. The obtained data were subjected to bioinformatics analysis to compare the differentially expressed RNAs in early-stage lung cancer patients and controls. These mRNA-level markers from exosomes can be used for the early diagnosis of lung cancer.
[0093] Furthermore, the application analysis of the RNA markers is as follows: (1) Collect body fluid samples (including blood, sputum, and saliva) of the individual to be tested; (2) Separate exosomes in the body fluid; (3) Extract exosome RNA with spkin external reference cel-miR-39; (4) Detect the expression level of the target RNA by a two-step method; (5) Normalize the expression level of the detected target RNA using the external reference gene; (6) Substitute the normalized gene expression level into the determination model to obtain an output value; (7) Determine whether the individual to be tested has lung cancer according to the output value of the model and the determination threshold.
[0094] The kit includes PCR primers, probes, standards for detecting exosome RmiNA markers, and a two-step detection system for reverse addition PCR.
[0095] Quantification of target RNA was performed by selecting external reference Cel-miR-39 or internal reference U6. When selecting a reference, the expression level of the biomarker was calculated using the quantification formula 2ΔΔCt based on the detected Ct value for the quantification of target RNA. After obtaining the expression level of the target RNA, the ROC curve and AUC were used to evaluate the accuracy of detecting lung cancer using a single RNA or multiple RNAs in combination.
[0096] Example 1 Screening of exosomal miRNA biomarkers related to early-stage lung cancer based on high-throughput sequencing
[0097] To screen for exosomal biomarkers related to the diagnosis of early-stage lung cancer, 72 patients with early-stage lung cancer diagnosis and 50 controls were enrolled. Blood samples of no less than 10 ml were taken and plasma was separated. Exosomes in the plasma were isolated using the classical ultracentrifugation method, and RNA was extracted using the qiagen miRNeasy mini kit. The obtained RNA was used for small RNA library construction and sequencing. The data obtained were subjected to bioinformatics analysis to compare the differentially expressed miRNAs in patients with early-stage lung cancer and controls. The significantly differentially expressed miRNAs are shown in Table 2 below. These RNA-level biomarkers from exosomes can be used for the early diagnosis of lung cancer.
[0098] Table 2
[0099]
[0100]
[0101] Example 2 miRNA detection system based on the fluorescence quantitative PCR platform
[0102] 1. miRNA reverse transcription reaction system
[0103] The miRNA reverse transcription reagents, enzymes, and oligodT were purchased from TAKARA. The standards were synthesized by Invitrogen in Shanghai. The specific reverse primers were synthesized by Suzhou Hongxun. A 20-μl reverse transcription system was used, as shown in Table 3 below.
[0104] Table 3
[0105]
[0106] 2. PCR reaction system
[0107] The PCR reaction mixture was purchased from TAKARA. The upstream primers, probes, and universal downstream primers were synthesized by Suzhou Hongxun. The fluorescence quantitative PCR instrument was the ABI 7500. The PCR reaction system is shown in Table 4 below.
[0108] Table 4
[0109]
[0110] The PCR program was 10 min at 95 °C, 15 cycles of (95 °C for 15 s; 55 °C for 30 s) without fluorescence collection, and 35 cycles of (95 °C for 15 s; 55 °C for 30 s) with fluorescence collection.
[0111] Evaluation of the detection effect of early-stage lung cancer diagnosis using Cel-miR-39 as a reference single biomarker other than in Example 3
[0112] 1. Sample collection
[0113] Collect 10 ml of blood from patients with early-stage (stage I and II) pulmonary nodule lung cancer, patients with benign pulmonary nodules, and healthy controls who have been diagnosed by a hospital, and separate it into plasma.
[0114] 2. Extraction of exosomal RNA
[0115] Separate plasma exosomes by ultracentrifugation or using Exosupur from Echobiotech (Beijing Enzekangtai) (the results of exosome electron microscopy identification are as Figure 1 ). Extract miRNA from the separated exosomes using the Qiagen miReasy mini kit, and detect the RNA concentration and quality using an Agilent 2100, and record the RNA concentration.
[0116] 3. Two-step RNA detection system
[0117] Use the two-step detection system for miRNA based on the PCR platform in Example 1 to detect the plasma exosomal miRNA of 30 early-stage lung cancer patients and 30 control samples (healthy people and benign nodules), detect the Ct value of the target miRNA, and calculate the relative expression level according to the Ct value and the relative quantification formula.
[0118] 4. Evaluation of the performance of exosomal miRNA in diagnosing early-stage lung cancer
[0119] (1) Evaluation of the performance of miR-3615 alone
[0120] As Figure 2As shown in the figure, the Ct values of miR-3615 were detected in the plasma exosomes of 30 early lung cancer patients and 30 control samples (healthy people and benign lesions). Using the external reference Cel-miR-39 as a reference, the copy number of miRNA was obtained according to the Ct value. The relative quantitative formula value was used to calculate the fold change of the relative expression level of the combined marker, and then the relative RNA expression level was obtained. The R language was used for t-test analysis of the detection results, and the pvalue = 0.00058 <= 0.05, indicating that exosomal miR-3615 was significantly correlated with early lung cancer. The AUC of miR-3615 for the diagnosis of early lung cancer alone was 0.785, with a negative predictive value of 85%, a sensitivity of 90%, and a specificity of 56.57%, showing the potential of a diagnostic marker.
[0121] (2) Performance evaluation of miR-502-3p detection alone
[0122] As Figure 3 shown in the figure, the Ct values of miR-502-3p were detected in the plasma exosomes of 30 early lung cancer patients and 30 control samples (healthy people and benign lesions). Using the external reference Cel-miR-39 as a reference, the copy number of miRNA was obtained according to the Ct value. The relative quantitative formula value was used to calculate the fold change of the relative expression level of the combined marker, and then the relative RNA expression level was obtained. The R language was used for t-test analysis of the detection results, and the pvalue = 0.00139 <= 0.05, indicating that exosomal miR-502-3p was significantly correlated with early lung cancer. The AUC of miR-502-3p for the diagnosis of early lung cancer alone was 0.756, with a negative predictive value of 68.42%, a sensitivity of 60%, and a specificity of 86.67%, showing the potential of a diagnostic marker.
[0123] (3) Performance evaluation of miR-450b-5p detection alone
[0124] As Figure 4 shown in the figure, the Ct values of miR-450b-5p were detected in the plasma exosomes of 30 early lung cancer patients and 30 control samples (healthy people and benign lesions). Using the external reference Cel-miR-39 as a reference, the copy number of miRNA was obtained according to the Ct value. The relative quantitative formula value was used to calculate the fold change of the relative expression level of the combined marker, and then the relative RNA expression level was obtained. The R language was used for t-test analysis of the detection results, and the pvalue = 0.00199 <= 0.05, indicating that exosomal miR-450b-5p was significantly correlated with early lung cancer. The AUC of miR-450b-5p for the diagnosis of early lung cancer alone was 0.744, with a negative predictive value of 80%, a sensitivity of 86.67%, and a specificity of 53.33%, showing the potential of a diagnostic marker.
[0125] (4) Performance evaluation of miR-4746-5p alone
[0126] As Figure 5 shown, the Ct values of miR-4746-5p were detected in the plasma exosomes of 30 early lung cancer patients and 30 control samples (healthy people and benign lesions). Using the external reference Cel-miR-39 as a reference, the copy number of miRNA was obtained according to the Ct value. Using the relative quantitative formula value, the fold change of the relative expression of the combined marker was calculated, and then the relative RNA expression was obtained. The t-test analysis of the detection results using R language showed that pvalue = 0.00183 <= 0.05, indicating that exosomal miR-4746-5p was significantly correlated with early lung cancer. The AUC of miR-4746-5p alone in diagnosing early lung cancer was 0.743, with a negative predictive value of 66.67%, a sensitivity of 60%, and a specificity of 80%, showing the potential of a diagnostic marker.
[0127] (5) Performance evaluation of miR-10a-5p alone
[0128] As Figure 6 shown, the Ct values of miR-10a-5p were detected in the plasma exosomes of 30 early lung cancer patients and 30 control samples (healthy people and benign lesions). Using the external reference Cel-miR-39 as a reference, the copy number of miRNA was obtained according to the Ct value. Using the relative quantitative formula value, the fold change of the relative expression of the combined marker was calculated, and then the relative RNA expression was obtained. The t-test analysis of the detection results using R language showed that pvalue = 0.00183 <= 0.05, indicating that exosomal miR-10a-5p was significantly correlated with early lung cancer. The AUC of miR-10a-5p alone in diagnosing early lung cancer was 0.73, with a negative predictive value of 77.27%, a sensitivity of 83.33%, and a specificity of 56.67%, showing the potential of a diagnostic marker.
[0129] (6) Performance evaluation of other markers significantly correlated with early lung cancer
[0130] The performance evaluation of other significantly correlated miRNAs is shown in Table 5 below.
[0131] Table 5
[0132]
[0133]
[0134] It can be seen from the data shown in Table 5 that the miRNAs described in the table all have the potential of diagnostic markers.
[0135] Evaluation of the Detection Effect of Multi-Marker Combinations for Early Diagnosis of Lung Cancer with Cel-miR-39 as a Reference Except for Example 4
[0136] 1. Performance Evaluation of Three-Marker Combinations
[0137] Calculate the relative expression levels of each miRNA according to the method in Example 3, and use logistic regression to train the three-marker combinations. The combinations with an AUC above 0.85 for the three-marker combinations are shown in Table 6 below. Among them, the two combinations miR-106-3p + miR-125a-5p + miR-3615 and miR-106b-3p + miR-3615 + miR-450b-5p have the best performance, with AUC values of 0.887 and 0.881 respectively. Their AUC curves are shown in Figure 7 and Figure 8 respectively.
[0138] Table 6
[0139]
[0140]
[0141] 2. Performance Evaluation of Five-Marker Combinations
[0142] Calculate the relative expression levels of each miRNA according to the method in Example 3, and use logistic regression to train the five-marker combinations. The combinations with an AUC above 0.93 for the five-marker combinations are shown in Table 7 below. Among them, the two combinations miR-106b-3p + miR-125a-5p + miR-3615 + miR-450b-5p + miR-885-5p and miR-106b-3p + miR-10a-3p + miR-125a-5p + miR-3615 + miR-450b-5p have the best performance, with AUC values of 0.951 and 0.948 respectively. Their AUC curves are shown in Figure 9 and Figure 10 respectively.
[0143] Table 7
[0144]
[0145]
[0146] Evaluation of the Detection Effect of Multi-Marker Combinations for Early Diagnosis of Lung Cancer with U6 as a Reference within Example 5
[0147] Calculate the relative expression levels of each miRNA with U6 as the reference according to the method in Example 3, and use logistic regression to train the five biomarker combinations. The combinations with an AUC of more than 85 for the five biomarker combinations are shown in Table 8 below. Among them, the combination of mmiR-106b-3P + miR-10a-5p + miR-125a-5p + miR-3615 + miR-450b-5p has the best performance, with an AUC of 0.864. Its AUC curves are respectively as Figure 11 shown.
[0148] Table 8
[0149]
[0150]
[0151] It can be seen from the above data that the lung cancer detection method based on exosomal miRNA markers of the present invention can achieve non-invasive diagnosis of lung cancer, provides important value for the early diagnosis and recurrence monitoring of lung cancer, and is of great help to the prevention and treatment of lung cancer in China. Among them, 5 miRNA markers (the combined AUC can reach up to 0.951, with a negative predictive value of 90.32%, a sensitivity of 90.00%, and a specificity of 93.33%) have extremely excellent diagnostic performance.
[0152] The preferred embodiments of the present invention disclosed above are only used to help illustrate the present invention. The preferred embodiments do not describe all the details in detail, nor do they limit the invention to the specific embodiments described. Obviously, many modifications and variations can be made according to the content of this specification. These embodiments are selected and specifically described in this specification to better explain the principles and practical applications of the present invention, so that those skilled in the art can well understand and utilize the present invention. The present invention is only limited by the claims and their full scope and equivalents. Sequence Listing <110> Cancer Hospital, Chinese Academy of Medical Sciences <120> Application of Exosomal miR-106b-3p, miR-10a-3p, etc. in the Diagnosis of Lung Cancer <130> 200001 <160> 80 <170> SIPOSequenceListing 1.0 <210> 1 <211> 50 <212> DNA <213> Artificial Sequence <400> 1 gtcgtatcca gtgcagggtc cgaggtattc gcactggata cgacgaaaga 50 <210> 2 <211> 21 <212> DNA <213> Artificial Sequence <400> 2 cgcgccctat acaatctact g 21 <210> 3 <211> 24 <212> DNA <213> Artificial Sequence <400> 3 tcgcactgga tacgacgaaa gaca 24 <210> 4 <211> 50 <212> DNA <213> Artificial Sequence <400> 4 gtcgtatcca gtgcagggtc cgaggtattc gcactggata cgacggaaag 50 <210> 5 <211> 21 <212> DNA <213> Artificial Sequence <400> 5 agcgcctata cagtctactg t 21 <210> 6 <211> 24 <212> DNA <213> Artificial Sequence <400> 6 tcgcactgga tacgacggaa agac 24 <210> 7 <211> 50 <212> DNA <213> Artificial Sequence <400> 7 gtcgtatcca gtgcagggtc cgaggtattc gcactggata cgacgcagca 50 <210> 8 <211> 17 <212> DNA <213> Artificial Sequence <400> 8 accgcactgt gggtact 17 <210> 9 <211> 22 <212> DNA <213> Artificial Sequence <400> 9 tcgcactgga tacgacgcag ca 22 <210> 10 <211> 50 <212> DNA <213> Artificial Sequence <400> 10 gtcgtatcca gtgcagggtc cgaggtattc gcactggata cgactattcc 50 <210> 11 <211> 21 <212> DNA <213> Artificial Sequence <400> 11 acgcgcaaat tcgtatctag g 21 <210> 12 <211> 25 <212> DNA <213> Artificial Sequence <400> 12 ttcgcactgg atacgactat tcccc 25 <210> 13 <211> 50 <212> DNA <213> Artificial Sequence <400> 13 gtcgtatcca gtgcagggtc cgaggtattc gcactggata cgaccacaaa 50 <210> 14 <211> 20 <212> DNA <213> Artificial Sequence <400> 14 cgctaccctg tagatccgaa 20 <210> 15 <211> 25 <212> DNA <213> Artificial Sequence <400> 15 ttcgcactgg atacgaccac aaatt 25 <210> 16 <211> 50 <212> DNA <213> Artificial Sequence <400> 16 gtcgtatcca gtgcagggtc cgaggtattc gcactggata cgactcacag 50 <210> 17 <211> 20 <212> DNA <213> Artificial Sequence <400> 17 cgtccctgag accctttaac 20 <210> 18 <211> 24 <212> DNA <213> Artificial Sequence <400> 18 tcgcactgga tacgactcac aggt 24 <210> 19 <211> 50 <212> DNA <213> Artificial Sequence <400> 19 gtcgtatcca gtgcagggtc cgaggtattc gcactggata cgacagacaa 50 <210> 20 <211> 19 <212> DNA <213> Artificial Sequence <400> 20 tgctgtgagg ttggcattg 19 <210> 21 <211> 24 <212> DNA <213> Artificial Sequence <400> 21 ttcgcactgg atacgacaga caac 24 <210> 22 <211> 50 <212> DNA <213> Artificial Sequence <400> 22 gtcgtatcca gtgcagggtc cgaggtattc gcactggata cgactcagtt 50 <210> 23 <211> 20 <212> DNA <213> Artificial Sequence <400> 23 cgctgtgcaa atctatgcaa 20 <210> 24 <211> 25 <212> DNA <213> Artificial Sequence <400> 24 tcgcactgga tacgactcag ttttg 25 <210> 25 <211> 50 <212> DNA <213> Artificial Sequence <400> 25 gtcgtatcca gtgcagggtc cgaggtattc gcactggata cgacacagtt 50 <210> 26 <211> 19 <212> DNA <213> Artificial Sequence <400> 26 accaagctgc cagttgaag 19 <210> 27 <211> 24 <212> DNA <213> Artificial Sequence <400> 27 tcgcactgga tacgacacag ttct 24 <210> 28 <211> 50 <212> DNA <213> Artificial Sequence <400> 28 gtcgtatcca gtgcagggtc cgaggtattc gcactggata cgactaaccg 50 <210> 29 <211> 20 <212> DNA <213> Artificial Sequence <400> 29 cccgtagcac catctgaaat 20 <210> 30 <211> 24 <212> DNA <213> Artificial Sequence <400> 30 ttcgcactgg atacgactaa ccga 24 <210> 31 <211> 50 <212> DNA <213> Artificial Sequence <400> 31 gtcgtatcca gtgcagggtc cgaggtattc gcactggata cgaccttcca 50 <210> 32 <211> 21 <212> DNA <213> Artificial Sequence <400> 32 accgctgtaa acatccttga c 21 <210> 33 <211> 22 <212> DNA <213> Artificial Sequence <400> 33 tcgcactgga tacgaccttc ca 22 <210> 34 <211> 50 <212> DNA <213> Artificial Sequence <400> 34 gtcgtatcca gtgcagggtc cgaggtattc gcactggata cgacgtcctg 50 <210> 35 <211> 19 <212> DNA <213> Artificial Sequence <400> 35 acgaagggct tcctctctg 19 <210> 36 <211> 22 <212> DNA <213> Artificial Sequence <400> 36 tcgcactgga tacgacgtcc tg 22 <210> 37 <211> 50 <212> DNA <213> Artificial Sequence <400> 37 gtcgtatcca gtgcagggtc cgaggtattc gcactggata cgacgcctaa 50 <210> 38 <211> 18 <212> DNA <213> Artificial Sequence <400> 38 actctctggg cctgtgtc 18 <210> 39 <211> 22 <212> DNA <213> Artificial Sequence <400> 39 tcgcactgga tacgacgcct aa 22 <210> 40 <211> 50 <212> DNA <213> Artificial Sequence <400> 40 gtcgtatcca gtgcagggtc cgaggtattc gcactggata cgacctagag 50 <210> 41 <211> 19 <212> DNA <213> Artificial Sequence <400> 41 agcctccgtg ttacctgtc 19 <210> 42 <211> 24 <212> DNA <213> Artificial Sequence <400> 42 tcgcactgga tacgacctag agga 24 <210> 43 <211> 50 <212> DNA <213> Artificial Sequence <400> 43 gtcgtatcca gtgcagggtc cgaggtattc gcactggata cgacgagccg 50 <210> 44 <211> 17 <212> DNA <213> Artificial Sequence <400> 44 cctctctcgg ctcctcg 17 <210> 45 <211> 22 <212> DNA <213> Artificial Sequence <400> 45 tcgcactgga tacgacgagc cg 22 <210> 46 <211> 50 <212> DNA <213> Artificial Sequence <400> 46 gtcgtatcca gtgcagggtc cgaggtattc gcactggata cgacccatct 50 <210> 47 <211> 18 <212> DNA <213> Artificial Sequence <400> 47 gcgactggac ttggtgtc 18 <210> 48 <211> 23 <212> DNA <213> Artificial Sequence <400> 48 tcgcactgga tacgacccat ctg 23 <210> 49 <211> 50 <212> DNA <213> Artificial Sequence <400> 49 gtcgtatcca gtgcagggtc cgaggtattc gcactggata cgacgggcgg 50 <210> 50 <211> 19 <212> DNA <213> Artificial Sequence <400> 50 agcatcggga atgtcgtgt 19 <210> 51 <211> 21 <212> DNA <213> Artificial Sequence <400> 51 tcgcactgga tacgacgggc g 21 <210> 52 <211> 50 <212> DNA <213> Artificial Sequence <400> 52 gtcgtatcca gtgcagggtc cgaggtattc gcactggata cgactattca 50 <210> 53 <211> 21 <212> DNA <213> Artificial Sequence <400> 53 tccgcttttg caatatgttc c 21 <210> 54 <211> 26 <212> DNA <213> Artificial Sequence <400> 54 ttcgcactgg atacgactat tcagga 26 <210> 55 <211> 50 <212> DNA <213> Artificial Sequence <400> 55 gtcgtatcca gtgcagggtc cgaggtattc gcactggata cgactctgca 50 <210> 56 <211> 17 <212> DNA <213> Artificial Sequence <400> 56 ccggtcccag gagaacc 17 <210> 57 <211> 22 <212> DNA <213> Artificial Sequence <400> 57 tcgcactgga tacgactctg ca 22 <210> 58 <211> 50 <212> DNA <213> Artificial Sequence <400> 58 gtcgtatcca gtgcagggtc cgaggtattc gcactggata cgacaagacg 50 <210> 59 <211> 18 <212> DNA <213> Artificial Sequence <400> 59 cgctcactcc tctcctcc 18 <210> 60 <211> 23 <212> DNA <213> Artificial Sequence <400> 60 tcgcactgga tacgacaaga cgg 23 <210> 61 <211> 50 <212> DNA <213> Artificial Sequence <400> 61 gtcgtatcca gtgcagggtc cgaggtattc gcactggata cgactgaatc 50 <210> 62 <211> 18 <212> DNA <213> Artificial Sequence <400> 62 acaatgcacc tgggcaag 18 <210> 63 <211> 25 <212> DNA <213> Artificial Sequence <400> 63 ttcgcactgg atacgactga atcct 25 <210> 64 <211> 50 <212> DNA <213> Artificial Sequence <400> 64 gtcgtatcca gtgcagggtc cgaggtattc gcactggata cgacgggctc 50 <210> 65 <211> 19 <212> DNA <213> Artificial Sequence <400> 65 cgagtgcctg agggagtaa 19 <210> 66 <211> 22 <212> DNA <213> Artificial Sequence <400> 66 tcgcactgga tacgacgggc tc 22 <210> 67 <211> 50 <212> DNA <213> Artificial Sequence <400> 67 gtcgtatcca gtgcagggtc cgaggtattc gcactggata cgaccaaaag 50 <210> 68 <211> 21 <212> DNA <213> Artificial Sequence <400> 68 cgcgctttag gataagcttg a 21 <210> 69 <211> 25 <212> DNA <213> Artificial Sequence <400> 69 ttcgcactgg atacgaccaa aagtc 25 <210> 70 <211> 50 <212> DNA <213> Artificial Sequence <400> 70 gtcgtatcca gtgcagggtc cgaggtattc gcactggata cgactctcgg 50 <210> 71 <211> 17 <212> DNA <213> Artificial Sequence <400> 71 tgaagcgcct gtgctct 17 <210> 72 <211> 23 <212> DNA <213> Artificial Sequence <400> 72 tcgcactgga tacgactctc ggc 23 <210> 73 <211> 50 <212> DNA <213> Artificial Sequence <400> 73 gtcgtatcca gtgcagggtc cgaggtattc gcactggata cgacagaggc 50 <210> 74 <211> 20 <212> DNA <213> Artificial Sequence <400> 74 acgctccatt acactaccct 20 <210> 75 <211> 22 <212> DNA <213> Artificial Sequence <400> 75 tcgcactgga tacgacagag gc 22 <210> 76 <211> 17 <212> DNA <213> Artificial Sequence <400> 76 ctcgcttcgg cagcaca 17 <210> 77 <211> 20 <212> DNA <213> Artificial Sequence <400> 77 aacgcttcac gaatttgcgt 20 <210> 78 <211> 20 <212> DNA <213> Artificial Sequence <400> 78 aacgcttcac gaatttgcgt 20 <210> 79 <211> 25 <212> DNA <213> Artificial Sequence <400> 79 agaagattag catggcccct gcgca 25 <210> 80 <211> 16 <212> DNA <213> Artificial Sequence <400> 80 gtgcagggtc cgaggt 16
Claims
1. Use of a primer and a probe for detecting plasma exosomal miRNA markers in the preparation of a lung cancer diagnostic kit, characterized in that, The exosomal miRNA markers are a combination of miR-106b-3p, miR-10a-3p, miR-125a-5p, miR-22-3p, and miR-3615.
2. The application according to claim 1, wherein The primers and probes include: Reverse transcription primer, PCR primers, and probe for detecting miR-106b-3p: The reverse transcription primer for miR-106b-3p has the nucleotide sequence shown in SEQ ID NO: 7, the PCR upstream primer has the nucleotide sequence shown in SEQ ID NO: 8, the downstream primer has the nucleotide sequence shown in SEQ ID NO: 80, and the probe has the nucleotide sequence shown in SEQ ID NO: 9; Reverse transcription primer, PCR primers, and probe for detecting miR-10a-3p: The reverse transcription primer for miR-10a-3p has the nucleotide sequence shown in SEQ ID NO: 10, the PCR upstream primer has the nucleotide sequence shown in SEQ ID NO: 11, the downstream primer has the nucleotide sequence shown in SEQ ID NO: 80, and the probe has the nucleotide sequence shown in SEQ ID NO: 12; Reverse transcription primer, PCR primers, and probe for detecting miR-125a-5p: The reverse transcription primer for miR-125a-5p has the nucleotide sequence shown in SEQ ID NO: 16, the PCR upstream primer has the nucleotide sequence shown in SEQ ID NO: 17, the downstream primer has the nucleotide sequence shown in SEQ ID NO: 80, and the probe has the nucleotide sequence shown in SEQ ID NO: 18; Reverse transcription primer, PCR primers, and probe for detecting miR-22-3p: The reverse transcription primer for miR-22-3p has the nucleotide sequence shown in SEQ ID NO: 25, the PCR upstream primer has the nucleotide sequence shown in SEQ ID NO: 26, the downstream primer has the nucleotide sequence shown in SEQ ID NO: 80, and the probe has the nucleotide sequence shown in SEQ ID NO: 27; Reverse transcription primer, PCR primers, and probe for detecting miR-3615: The reverse transcription primer for miR-3615 has the nucleotide sequence shown in SEQ ID NO: 43, the PCR upstream primer has the nucleotide sequence shown in SEQ ID NO: 44, the downstream primer has the nucleotide sequence shown in SEQ ID NO: 80, and the probe has the nucleotide sequence shown in SEQ ID NO:
45.
3. Use of a primer and a probe for detecting miRNA markers in plasma exosomes in the preparation of a device for diagnosing lung cancer, characterized in that, The exosomal miRNA markers are a combination of miR-106b-3p, miR-10a-3p, miR-125a-5p, miR-22-3p, and miR-3615.
Citation Information
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Reagent kits, devices and methods for lung cancer diagnosis
CN113667753B