Glycosylated VWF fusion proteins with improved pharmacokinetics

Abstract

To provide a glycosylated von Willebrand factor (VWF) fusion protein with improved pharmacokinetics.SOLUTION: The invention relates to a fusion protein comprising a main protein and one or more extension peptides, wherein the amino acid sequence of the main protein is identical or similar to the amino acid sequence of a mammalian protein or a fragment thereof, and the extension peptide comprises a cluster of O-glycosylated amino acids. The main protein is preferably VWF. The fusion protein has an increased half life as compared to the main protein and may be used to increase the half-life of a binding partner, e.g. FVIII. The invention further relates to a complex formed by the fusion protein, a polynucleotide encoding the fusion protein as well as a vector and host cell comprising the polynucleotide.SELECTED DRAWING: Figure 1

Description

[Technical field]

[0001] The present invention relates to the extension of the half-life of proteins, in particular human coagulation factors such as von Willebrand Factor (VWF) and Factor VIII (FVIII). [Background technology]

[0002] Hemophilia is a group of inherited genetic diseases that impair the body's ability to control blood clotting or coagulation. In its most common form, hemophilia A, there is a deficiency of clotting factor VIII (FVIII). Hemophilia A occurs in approximately 1 in 5,000 to 10,000 male births. The FVIII protein is an essential cofactor in blood clotting that has multiple functions. FVIII deficiency can be treated with plasma-derived concentrates of FVIII or recombinantly produced FVIII. Treatment with FVIII concentrates results in a normalized life span for hemophilia patients.

[0003] Patients with hemophilia A are treated with FVIII on an as-needed basis or as prophylactic therapy administered several times a week. For prophylactic therapy, 15-25 IU / kg body weight of FVIII is administered three times a week, which is essential due to the constant need for FVIII and its short half-life in the blood system, which in humans is only about 11 hours (Ewenstein et al., 2004).

[0004] In blood, under normal conditions, FVIII molecules are always bound to its cofactor von Willebrand factor (VWF), which stabilizes the FVIII molecule from various different forms of degradation. The non-covalent complex of FVIII and VWF has a high binding affinity of 0.2–0.3 nM (Vlot et al., 1996).

[0005] Historically, hemophilia A has been treated with FVIII derived from human plasma. However, since the 1990s, different recombinantly produced FVIII proteins have become commercially available. However, neither the plasma-derived nor the recombinantly produced FVIII proteins have optimal pharmacokinetic properties. Like many other therapeutic proteins, they are subject to metabolic turnover by peptidases, significantly limiting their in vivo half-life.

[0006] As reviewed by Tiede et al. (2015), attempts to extend the half-life of FVIII include Fc fusions (Eloctate, Elocta, efmorctocog alfa), addition of polyethylene glycol (turoctocog alfa pegol [N8-GP], BAY 94-9027, BAX 855) and short chain constructs (CSL627). All of these techniques alter the FVIII molecule and result in FVIII with an increased half-life of approximately 1.5-fold.

[0007] Further half-life extension of FVIII is limited to VWF half-life. As shown by Yee et al., human VWF D'D3 domain is sufficient to stabilize FVIII in plasma. However, D'D3-Fc fusion protein can extend the half-life of FVIII only in VWF- / - mice. In hemophilia A mice, D'D3-Fc construct does not extend the half-life of FVIII due to insufficient competition of the protein fragment with endogenous VWF for FVIII binding.

[0008] WO2014 / 011819A2 reports the successful half-life extension of a FVIII construct that includes the D´D3 domain of VWF, the Fc domain of IgG, and XTEN. Because this construct does not bind to endogenous VWF, the same half-life extension effect is seen in both VWF / FVIII-double knockout (DKO) and hemophilia A mice. However, while fully functional in vitro, it shows significantly reduced activity in vivo.

[0009] Other approaches to increasing the half-life of therapeutic proteins include genetically fusing the therapeutic protein to proteins with naturally long half-lives, such as transferrin and albumin, or to protein domains such as the C-terminal peptide (CTP) of chorionic gonadotropin (CG).

[0010] CG belongs to the glycoprotein hormone family that includes luteinizing hormone (LH), follicle-stimulating hormone (FSH), and thyroid-stimulating hormone (TSH). These glycohormones are heterodimers and consist of a common α-subunit and a unique β-subunit that confers different activities. The half-life of human CG (hCG) is significantly longer than that of its counterparts LH, FSH, and TSH. O-glycosylated CTP of hCG-β has been shown to be responsible for this extended half-life. CTP has four O-glycosylation sites (S * The sequence has been described as FQSSSS*KAPPPS*LPSPS*RLPGPS*DTPILPQ (Birken et al., 1977).

[0011] As reviewed in Strohl et al. (2015), different fusion proteins of therapeutic proteins and CTPs have been developed and are currently in clinical trials. Therapeutic proteins include FSH (Elonva®), FVIIa, FIX, IFN-β and oxyntomodulin. Summary of the Invention [Problem to be solved by the invention]

[0012] Summary of the Invention The present invention is based, inter alia, on the discovery that the addition of a cluster of O-glycosylated amino acids, which is present in full-length human VWF, to a fragment of VWF leads to a significant increase in its half-life. The half-life of the fusion protein is extended compared to a VWF fragment that does not contain the additional O-glycan cluster.

[0013] Thus, according to a first aspect, the present invention relates to a fusion protein comprising a main protein and at least one extension peptide, wherein the amino acid sequence of the main protein is identical or similar to the amino acid sequence of a mammalian protein such as VWF, or a fragment thereof, and wherein said extension peptide comprises a cluster of O-glycosylated amino acids.

[0014] Interestingly, the extended peptides containing a cluster of O-glycosylated amino acids, added to a fragment of VWF, are derived from this very protein, i.e. VWF. Thus, the applicant has identified a general principle for extending the half-life of a protein, which is to add an endogenous cluster of O-glycosylated amino acids of the protein to said protein or a fragment thereof.

[0015] Thus, according to a preferred embodiment of the fusion protein of the first aspect, the amino acid sequence of the one or more extension peptides is identical or similar to the non-repetitive amino acid sequence portion of said mammalian protein or a fragment thereof, in particular said main protein.

[0016] A further conclusion from the inventors' findings is that the cluster of O-glycosylated amino acids of VWF identified by SEQ ID NO:1 is useful as a half-life extending peptide.

[0017] According to a further preferred embodiment of the first aspect, the half-life extending property is not limited to VWF, so that the one or more extending peptides have at least 90%, preferably at least 95%, more preferably at least 98%, most preferably at least 100% sequence identity to an O-glycosylated peptide of VWF, in particular the peptide of SEQ ID NO:1.

[0018] In a second aspect, the present invention relates to a polynucleotide encoding the fusion protein according to the first aspect.

[0019] According to a third aspect, the present invention relates to a vector containing a polynucleotide according to the second aspect.

[0020] According to a fourth aspect, the present invention relates to a host cell containing a polynucleotide according to the second aspect or a vector according to the third aspect, wherein the host cell is a mammalian cell. The inventors have found that not only is the half-life of VWF increased, but also the half-life of its binding partner, FVIII.

[0021] Thus, in a fifth aspect, the present invention relates to the use of a fusion protein of the first aspect for increasing the half-life of a second protein, wherein the fusion protein is capable of binding to said second protein.

[0022] Thus, in the resulting complex or composition of the fusion protein and the second protein, the second protein also has an increased half-life.

[0023] Thus, in a sixth aspect, the present invention relates to a composition of a first protein and a second protein, wherein said first protein is a fusion protein according to the first aspect and is capable of binding to said second protein, and said second protein is a therapeutic protein comprising an amino acid sequence that is identical or similar to the amino acid sequence of a second mammalian protein or a fragment thereof.

[0024] And according to a seventh aspect, the present invention relates to a complex of a first protein and a second protein, wherein said first protein is a fusion protein according to the first aspect and said second protein has an amino acid sequence identical or similar to the amino acid sequence of a second mammalian protein or a fragment thereof.

[0025] Finally, in an eighth aspect, the present invention also relates to a pharmaceutical composition comprising a fusion protein according to the first aspect, a composition according to the sixth aspect or a conjugate according to the seventh aspect, preferably for use in the treatment or prevention of a bleeding disorder selected from the treatment of PUP or the treatment of ITI and other related bleeding disorders. [Brief description of the drawings]

[0026] [Figure 1] FIG. 1 shows a schematic diagram of A) a VWF fragment OCTA 11, B) a fusion protein according to the invention having a VWF fragment as the main protein: OCTA 12, C) a fusion protein according to the invention having a VWF fragment as the main protein: OCTA 14, D) a fusion protein according to the invention having a VWF fragment as the main protein: OCTA 15. [Diagram 2] Figure 2 shows the time course of FVIII activity in FVIII / VWF double knockout (DKO) mouse plasma after intravenous administration of FVIII co-formulated with different VWF proteins or plasma-derived full-length VWF. Data points and error bars represent the mean and standard deviation (SD) of five values. Due to their small size, some of the error bars are not discernible. [Diagram 3] FIG. 3 shows the time course of antigen concentration of OCTA 12 after subcutaneous administration of 100 U / kg FVIII co-formulated with OCTA 12 in minipig plasma. [Figure 4]FIG. 4 shows the time course of FVIII antigen concentration after subcutaneous and intravenous injection of 100 U / kg FVIII or subcutaneous injection of 100 U / kg FVIII co-formulated with VWF-protein, OCTA 12, in minipig plasma. DETAILED DESCRIPTION OF THE PREFERRED EMBODIMENTS

[0027] In order to provide a clear and consistent understanding of the specification and claims, and the scope to be given such terms, the following definitions are provided.

[0028] definition A "peptide" as used herein may be composed of any number of amino acids of any type, preferably naturally occurring amino acids, preferably linked by peptide bonds. In particular, a peptide comprises at least 3 amino acids, preferably at least 5, at least 7, at least 9, at least 12, or at least 15 amino acids. Furthermore, there is no upper limit to the length of a peptide. However, preferably, a peptide according to the present invention is not more than 500 amino acids long, more preferably not more than 300 amino acids long. Even more preferably, it is not more than 250 amino acids long.

[0029] Thus, the term "peptide" includes "oligopeptide," which typically refers to a peptide having a length of 2 to 10 amino acids, and "polypeptide," which typically refers to a peptide having a length of more than 10 amino acids.

[0030] A "protein" as used herein may include one or more polypeptide chains. Proteins with one or more polypeptide chains are often expressed as one polypeptide chain from a gene and are cleaved after translation. Thus, the terms "polypeptide" and "protein" are used interchangeably. Polypeptides and proteins as used herein include chemically synthesized proteins as well as naturally synthesized proteins encoded by genes. The polypeptides or proteins can be obtained from natural sources, such as human blood, or produced in cell culture as recombinant proteins.

[0031] The term "therapeutic protein" as used herein relates to a protein or polypeptide having a therapeutic effect, i.e. a protein used as an active pharmaceutical ingredient.

[0032] According to the present invention, the terms "protein precursor", "pro-protein" or "propeptide" relate to an inactive protein (or peptide) that can be converted into an active form by post-translational modification, enzymatic cleavage of a part of the amino acid sequence.

[0033] The relatedness between two amino acid sequences or between two nucleotide sequences is described by the parameter "sequence identity". For the purposes of the present invention, the degree of sequence identity between two amino acid sequences is determined using the Needleman-Wunsch algorithm (Needleman and Wunsch, 1970, J. Mol. Biol. 48: 443-453), as implemented in the Needle program of the EMBOSS package (EMBOSS: European Molecular Biology Open Software Suite, Rice et al. / 2000, Trends Genet. 16: 276-277), preferably version 3.0.0 or later). Optional parameters used are a gap open penalty of 10, a gap extension penalty of 0.5, and the EBLOSUM62 (EMBOSS version of BLOSUM62) substitution matrix. The output of the needle labeled “longest identity” (obtained without using any of the simple options) is used as the percent identity and is calculated as follows: (identical residues x 100) / (length of alignment - total number of gaps in the alignment).

[0034] For purposes of the present invention, the degree of sequence identity between two nucleotide sequences is determined using the Needleman-Wunsch algorithm (Needleman and Wunsch, 1970, supra), as implemented in the Needle program of the EMBOSS package (EMBOSS: The European Molecular Biology Open Software Suite, Rice et al., 2000, supra), preferably version 3.0.0 or later. Optional parameters used are a gap open penalty of 10, a gap extension penalty of 0.5, and the EDNAFULL (EMBOSS version of NCBI NUC4.4) substitution matrix. The output of Needle labeled "longest identity" (obtained using the nobrief option) is used as the percent identity and is calculated as follows: (identical deoxyribonucleotides × 100) / (length of alignment − total number of gaps in the alignment)

[0035] The terms "Similarity" and "similar" used herein in reference to the definition of a peptide or polynucleotide refer to a certain degree of sequence identity of an amino acid sequence or nucleotide sequence with a reference. A similar amino acid sequence is understood to include an amino acid sequence that is at least 80%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98% or 99% identical to the subject sequence. Typically, however, a similar sequence will contain the same residues at positions relevant to the function of the peptide or polynucleotide, such as active site residues or glycosylated amino acids, although it may contain any of the conservative amino acid substitutions. A similar nucleotide sequence is understood to include a nucleotide sequence that is at least 80%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98% or 99% identical to the subject sequence.

[0036] As used herein, "identical" refers to an amino acid or nucleotide sequence with 100% sequence identity to a subject sequence.

[0037] The term "recombinant" when used in reference to a cell, nucleic acid, protein, or vector means that the cell, nucleic acid, protein, or vector has been modified by the introduction of a heterologous nucleic acid or protein or the alteration of a naturally occurring nucleic acid or protein, or that the cell is derived from a cell so modified. Thus, for example, a recombinant cell expresses genes that are not found within the native (non-recombinant) form of the cell, or expresses native genes at different levels or under different conditions than are found in nature.

[0038] The term "half-life" as used herein is the time required for the plasma / blood concentration to decrease by 50% after reaching pseudo-equilibrium of distribution (as defined by Toutain et al., 2005). The term "half-life" is also called "circulatory half-life," "terminal half-life," or "elimination half-life."

[0039] As used herein, the terms "transformed," "stably transformed," and "transgenic," when used with reference to a cell, mean that the cell contains a non-native (e.g., heterologous) nucleic acid sequence that is integrated into its genome or carried as an episome that is maintained through multiple generations.

[0040] As used herein, the term "fragment" refers to a polypeptide having an amino- and / or carboxy-terminal deletion of one or more amino acids compared to the native or wild-type protein, where the remaining amino acid sequence is identical to the corresponding positions in the amino acid sequence deduced from the full-length cDNA. Fragments are typically at least 50 amino acids in length.

[0041] The term "glycosylated" as used herein refers to the attachment of a glycan to a molecule, e.g., a protein. Glycosylation can be an enzymatic reaction. The bond formed can be via a covalent bond. Thus, as used herein, a glycosylated polypeptide is a polypeptide to which one or more glycans are attached. The phrase "highly glycosylated" refers to a molecule, such as an enzyme, that is glycosylated at all or nearly all of the available glycosylation sites, e.g., O-linked or N-linked glycosylation sites.

[0042] The term "glycan" as used herein refers to a polysaccharide or oligosaccharide, or the carbohydrate moiety of a glycoprotein or glycosylated polypeptide. Glycans can be homopolymers or heteropolymers of monosaccharide residues. They may be linear or branched molecules. Glycans typically contain at least three sugars and can be linear or branched. Glycans may contain natural sugar residues (e.g., glucose, N-acetylglucosamine, N-acetylneuraminic acid, N-acetylgalactosamine, galactose, mannose, fucose, arabinose, ribose, xylose, etc.) and / or modified sugars (e.g., 2'-fluororibose, 2'-deoxyribose, phosphomannose, 6'-sulfo-N-acetylglucosamine, etc.).

[0043] The term "O-glycan" as used herein refers to glycans that are commonly found covalently attached to serine and threonine residues of mammalian glycoproteins. O-glycans may be α-linked to the -OH of serine or threonine by an O-glycosidic bond via an N-acetylgalactosamine (GalNAc) moiety. Other linkages include α-linked O-fucose, β-linked O-xylose, α-linked O-mannose, β-linked O-GlcNAc (N-acetyl-glucosamine), α- or β-linked O-galactose, and α- or β-linked O-glucose glycans.

[0044] According to the present invention, the terms "O-glycosylation cluster", "O-glycan cluster" and "cluster of O-glycosylated amino acids" are used interchangeably and relate to two or more O-glycosylated amino acids.

[0045] As used herein, the term "sialylated" refers to molecules, particularly glycans, that have been reacted with sialic acid or its derivatives.

[0046] The transitional term "comprising," which is synonymous with "including," "containing," or "characterized by," is inclusive or open-ended and does not exclude additional, unrecited elements or method steps. The transitional phrase "consisting of" excludes any element, step, or ingredient not specified in the claim, except for impurities ordinarily accompanying them. When the term "consisting of" appears in a phrase in the body of a claim rather than immediately following the preamble, it limits only the elements recited in that phrase. Other elements are not excluded from the claim as a whole. The transitional phrase "consisting essentially of" limits the scope of the claim to certain materials or steps, and those that do not materially affect the basic and novel characteristics of the claimed invention. The claim "consisting essentially of" falls somewhere between a closed claim written in the "consisting of" format and a wholly open claim drafted in the "comprising" format.

[0047] In the context of the present invention, for practical reasons, the term "glycosylated protein", like fusion protein, is used in the singular form. Generally, in praxis, proteins are present in a composition of protein molecules of the same type. However, in the case of glycosylated proteins, the glycosylation will not be identical in all molecules of the composition. For example, not all individual molecules of the composition are 100% glycosylated. Furthermore, differences may occur in the glycans attached to a particular O-glycosylation site. Thus, in the present application, reference to a "fusion protein" also relates to a composition of fusion protein molecules having the same amino acid sequence but differences in the O-glycan structure.

[0048] As used herein, the term "binding affinity" or "affinity" refers to the strength of binding between two molecules, particularly a ligand and a protein target. Binding affinity is influenced by non-covalent intermolecular interactions between the two molecules, such as hydrogen bonds, electrostatic interactions, hydrophobic interactions, and van der Waals forces.

[0049] Immune response as used herein refers to adaptive or innate immune responses. Innate immune responses refer to non-specific defense mechanisms that are activated immediately or within hours after an antigen appears in the body. These mechanisms include physical barriers such as the skin, chemicals in the blood, and immune system cells that attack foreign cells in the body. Innate immune responses are activated by the chemical nature of the antigen. Adaptive immune responses refer to antigen-specific immune responses. For this, the antigen must first be processed and recognized. Once an antigen is recognized, the adaptive immune system creates a large number of immune cells that are specifically designed to attack that antigen.

[0050] Fusion proteins According to a first aspect, the present invention provides a fusion protein comprising a main protein and at least one extension peptide, wherein the amino acid sequence of the main protein is identical or similar to the amino acid sequence of a mammalian protein or a fragment thereof, and said extension peptide comprises a cluster of O-glycosylated amino acids.

[0051] The present inventors have identified a modification of the protein that results in an increase in half-life, namely the addition of an extended peptide containing a cluster of O-glycosylated amino acids. As shown in the examples, fusion of O-glycosylation cluster 1 of human VWF to a fragment of VWF as an extension peptide results in a fusion protein (OCTA 12) with an increased half-life compared to the VWF fragment alone (OCTA 11).

[0052] Half-life (t 1 / 2) can be calculated by linear regression analysis of the log-linear portion of the individual plasma concentration-time curves or by nonlinear regression using a one-phase exponential decay model. Exemplary software programs for the calculation are GraphPad Prism version 6.07 (La Jolla, CA92037 USA) and WinNonlin version 6.4 (Pharsight, Mountain View, CA, USA).

[0053] The calculation is based on the following formula:

number

[0054] Thus, according to one embodiment, the fusion protein has an increased half-life compared to the main protein without the extension peptide.

[0055] Since it was possible to increase the half-life of a VWF fragment carrying a cluster of glycosylated amino acids derived from VWF, the inventors have identified a novel principle for extending the half-life. That is, the increase in the half-life of a protein or a fragment of a protein by the addition of clusters of O-glycosylated amino acids, which are also present in naturally occurring proteins.

[0056] Thus, according to one embodiment of the fusion protein, the amino acid sequence of the one or more extension peptides is identical or similar to a section of said mammalian protein, said section of said mammalian protein being in particular a non-repetitive amino acid sequence.

[0057] As used herein, a non-repetitive amino acid sequence is a sequence that is found in only one copy in a naturally occurring mammalian protein according to the present invention. Thus, a non-repetitive amino acid sequence explicitly excludes any repetitive sequences that occur in natural proteins. A sequence is considered to be repetitive in particular if it consists of more than 20 amino acids, preferably more than 15 amino acids, more preferably more than 10 amino acids, and if a mammalian protein contains one or more of said sequences.

[0058] Repeated sequences can be derived from so-called variable number tandem repeats. Variable number tandem repeats (VNTRs) are locations in the genome where short nucleotide sequences are organized as "tandem repeats". "Tandem repeats" occur in DNA when a pattern of one or more nucleotides is repeated and the repeats are directly adjacent to each other. VNTRs are found on many chromosomes and often show length variations between individuals. When tandem repeat sequences are located in protein coding DNA sequences, they result in repetition of amino acid sequences. An example is the tandem repeats found in all members of the mucin protein family. Mucins are a family of high molecular weight, highly glycosylated proteins produced by epithelial tissues of most organisms in the animal kingdom. The non-repetitive amino acid sequence according to the invention expressly excludes such amino acid sequence tandem repeats, in particular mucin tandem repeats.

[0059] The extension peptides may not only originate from the same mammalian protein as the main protein, but more particularly may contain sections that are also present in the main protein. Thus, according to one embodiment, the amino acid sequence of one or more of the extension peptides is identical or similar to a section of the unique amino acid sequence of said main protein.

[0060] Preferably, one or more of the extension peptides are not derived from chorionic gonadotropin β-subunit (CG-β).The C-terminal peptide (CTP) of chorionic gonadotropin β-subunit has been shown to increase the half-life of other proteins, such as FSH, FVIIa and FIX.However, when hCG is described with additional CTP, i.e., when it has one or more CTP copies, this protein is specifically excluded from the subject matter of the present invention.Therefore, in particular, the extension peptide is neither identical nor similar to the CTP of CG-β.

[0061] According to the present invention, two or more O-glycosylated amino acids in close proximity in an amino acid sequence are considered as a cluster. Thus, according to one embodiment of the fusion protein, the cluster of O-glycosylated amino acids of at least one extended peptide comprises at least two O-glycosylated amino acids. The cluster may, for example, comprise 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, or 15 O-glycosylated amino acids.

[0062] According to theory, the half-life extension effect is based on the negative charge of O-glycans. Therefore, the half-life extension effect should increase with the number of O-glycosylated amino acids in the cluster. Therefore, the cluster preferably contains at least three O-glycosylated amino acids. As shown in the examples, a significant half-life propagation effect was achieved with an extended peptide having a cluster of four O-glycosylated amino acids. Therefore, according to a preferred embodiment, the cluster contains at least four O-glycosylated amino acids.

[0063] In addition to the O-glycosylated amino acids of the cluster, N-glycosylated amino acids may also be present. Preferably, there are no N-glycosylated amino acids in the O-glycosylated cluster.

[0064] When multiple extension peptides are present, the clusters of the extension peptides may have different numbers of O-glycosylated amino acids. For example, a fusion protein may contain one cluster with two O-glycosylated amino acids and a second cluster with four O-glycosylated amino acids. Further, one cluster may contain three O-glycosylation sites and the other four O-glycosylation sites.

[0065] The O-glycosylated amino acids of the extension peptide may be O-glycosylated amino acids of the mucin type, serine (Ser) and threonine (Thr). However, O-glycosylated tyrosine (Tyr), hydroxylysine (Hydroxy-Lys) or hydroxyproline (Hydroxy-Pro) are also known in the art. Thus, one or more O-glycosylated amino acids in the fusion protein, in particular in the extension peptide, may be selected from Ser, Thr, Tyr, hydroxy-Lys and hydroxy-Pro.

[0066] The extension peptide fused to the VWF fragment in OCTA 12, which results in an extension of the half-life of said fragment, comprises both O-glycosylated threonine and serine residues. Thus, according to one embodiment of the first aspect, the cluster of O-glycosylated amino acids comprises at least one O-glycosylated threonine. Advantageously, said cluster comprises both threonine and serine as O-glycosylated amino acids. Interestingly, the extension peptide of OCTA 12 comprises at least two adjacent O-glycosylated threonine residues. Thus, in one embodiment, the extension peptide comprises at least two adjacent O-glycosylated threonine residues.

[0067] As explained above, it is believed that the negative charge on the protein surface generated by O-glycans leads to an extension of half-life. Without wishing to be bound by theory, it is believed that two or more O-glycans in close proximity are required for the effect to be expressed. If the gap between O-glycans is too large, i.e., if there is less than one O-glycosylated amino acid in 15 amino acids, the effect may be weakened or nullified. Thus, in one embodiment of the fusion protein, at least one extension peptide contains at least one O-glycosylated amino acid in 15 amino acids.

[0068] More preferably, at least one of the extended peptides comprises at least one O-glycosylation site within 10 amino acids. As shown in the examples, the tested extended peptides comprise a cluster with one O-glycosylation site within 8 amino acids. Thus, according to a preferred embodiment, one or more of the clusters comprise at least one glycosylation site within 8 amino acids.

[0069] The length of the extension peptide is defined by two different aspects. The extension peptide must be long enough to include a recognition site that promotes glycosylation of the O-glycosylated amino acid. Thus, the extension peptide must be at least 10 amino acids long. On the other hand, the shorter the extension peptide, the less likely it is to interfere with the structural integrity or activity, and thus the therapeutic effect, of the main protein. Thus, the extension peptide must not exceed 100 amino acids. According to one embodiment, the one or more extension peptides have a length in the range of 15 to 60 amino acids. It is preferred that the length ranges from 22 to 40 amino acids to allow O-glycosylation of four amino acids within the extension peptide. More preferably, the length of the extension peptide is about the length of the extension peptide of OCTA 12, i.e., in the range of 26 to 36 amino acids. According to one embodiment, the one or more extension peptides have a length of about 31 amino acids.

[0070] Our findings not only lead to the principle conclusion that the addition of one or more copies of an O-glycosylated peptide naturally occurring in a protein increases the half-life of that same protein or a fragment thereof, but also the presented results make it credible that the specific O-glycosylated peptide of VWF, like CTP, can increase the half-life of other proteins, i.e. proteins in general.

[0071] Thus, according to one embodiment, the one or more extension peptides have at least 90% sequence identity to the O-glycosylated peptide of human VWF. This extension peptide derived from human VWF can be fused to other mammalian proteins or fragments thereof, such as FVIII. The sequence identity of the one or more extension peptides is preferably at least 95% to the O-glycosylated peptide of human VWF. More preferably, the sequence identity is at least 98%. Most preferably, the sequence of the extension peptide is identical to the O-glycosylated peptide of human VWF.

[0072] The O-glycosylated peptide of human VWF preferably comprises, at least in part, O-glycosylation cluster 2 of VWF (amino acids 1238 to 1268 of SEQ ID NO:2): QEPGGLVVPPTDAPVSPTTLYVEDISEPPLH (SEQ ID NO:1) or a variant thereof. Thus, according to one embodiment, the extended peptide has at least 90% sequence identity with SEQ ID NO:1. The sequence identity to SEQ ID NO:1 is preferably at least 95%. More preferably, the sequence identity of the extended peptide to SEQ ID NO:1 is at least 98%. Most preferably, one or more extended peptides have 100% sequence identity to SEQ ID NO:1.

[0073] The main protein is based on a mammalian protein, i.e. contains a similar or identical amino acid sequence to a mammalian protein or a fragment thereof, the mammalian protein being in particular a human protein.

[0074] The mammalian protein, whose amino acid sequence of the main protein is similar or identical, may be a glycosylated protein. According to one embodiment of the fusion protein, the main protein comprises a glycosylated portion of a mammalian protein. According to another embodiment, the main protein comprises at least one cluster of O-glycosylated amino acids. This cluster of O-glycosylated amino acids may be identical to the cluster of O-glycosylated amino acids in the extended peptide.

[0075] The mammalian protein on which the main protein is based is more preferably a blood protein. According to one embodiment, the mammalian protein is a human blood protein.

[0076] The mammalian blood protein can be a blood clotting factor, a transport protein, a protease inhibitor, an immunoglobulin, a cell-associated plasma protein, an apolipoprotein, a cofactor, a growth factor, an antiangiogenic protein, a highly glycosylated protein, a blood factor or another blood protein.

[0077] The blood clotting factors, in particular the human blood clotting factors, are preferably selected from the group consisting of fibrinogen (FI), prothrombin (FII), tissue factor (FIII), FV, FVII, FVIII, FIX, FX, FXI, FXII, and FXIII, VWF, and ADAMTS13.

[0078] It is understood that the coagulation factors FI, FII, FV, FVII, FVIII, FIX, FX, FXI, FXII, and FXIII may be in inactive or activated form. Thus, in the context of the present invention, reference to FI, FII, FV, FVII, FVIII, FIX, FX, FXI, FXII, and FXIII also includes the activated forms, FIa (fibrin), FIIa (thrombin), FVa, FIXa, FVIIa, FVIIIa, FXa, FXIa, FXIIa, and FXIIIa, respectively, unless specifically otherwise expressly stated or the context indicates that the activated forms are logically excluded. Thus, in this context, FI, FII, FV, FIX, FVII, FVIII, FX, FXI, FXII, and FXIII can be read as FI / FIa, FII / FIIa, FV / FVa, FVII / FVIIa, FVIII / FVIIIa, FIX / FIXa, FX / FXa, FXI / FXIa, FXII / FXIIa, and FXIII / FXIIIa.

[0079] The transport protein, particularly the human transport protein, may be selected from albumin, transferrin, ceruloplasmin, haptoglobin, hemoglobin, and hemopexin.

[0080] According to one embodiment, the mammalian protein is a protease inhibitor, in particular a human protease inhibitor, examples of such protease inhibitors are β-antithrombin, α-antithrombin, pre-latent-antithrombin, oxidized antithrombin, 2-macroglobulin, C1-inhibitor, tissue factor pathway inhibitor (TFPI), heparin cofactor II, protein C inhibitor (PAI-3), protein C, protein S, and protein Z.

[0081] Examples of immunoglobulins are polyclonal antibodies (IgG), monoclonal antibodies, IgG1, IgG2, IgG3, IgG4, IgA, IgA1, IgA2, IgM, IgE, IgD, and Bence Jones proteins.

[0082] Cell-associated plasma proteins are, for example, fibronectin, thromboglobulin, or platelet factor 4. Examples of apolipoproteins are apo AI, apo A-II, and apo E.

[0083] Cofactors of the present invention include, for example, factor B, factor D, factor H, factor I, C3b inactivator, properdin, C4 binding protein, and the like.

[0084] Examples of growth factors include platelet-derived growth factor (PDGF), epidermal growth factor (EGF), transforming growth factor alpha (TGF-α), transforming growth factor beta (TGF-α), fibroblast growth factor (FGF) and hepatocyte growth factor (HGF).

[0085] Antiangiogenic proteins include latent-antithrombin, prelatent-antithrombin, oxidized antithrombin and plasminogen.

[0086] Examples of highly glycosylated proteins are alfa-1-acid glycoprotein, antichymotrypsin, inter-alpha-trypsin inhibitor, alpha-2-HS glycoprotein, C-reactive protein. The blood factor can be, for example, erythropoietin, interferon, tumor factor, tPA, or gCSF.

[0087] Other human blood proteins include histidine-rich glycoprotein, mannan-binding lectin, C4-binding protein, fibronectin, GC-globulin, plasminogen / plasmin, alpha-1 microglobulin, and C-reactive protein.

[0088] The mammalian protein is in particular selected from human VWF, fibrinogen, prothrombin, FIII, FV, FVII, FVIII, FIX, FX, FXI, FXII, FXIII, ADAMTS13, antithrombin, alpha-1 antitrypsin, C1-inhibitor, antichymotrypsin, PAI-1, PAI-3,2-macroglobulin, TFPI, heparin cofactor II, protein Z, protein C, and protein S.

[0089] Factor VIII in humans is encoded by the F8 gene, which contains 187,000 base pairs in 6 exons. The transcribed mRNA has a length of 9,029 base pairs and is translated into a protein of 2,351 amino acids with 19 amino acids removed. The FVIII molecule in humans is glycosylated at 31 amino acids, with 25 N-glycosylations and 6 O-glycosylations (see Kannicht et al., 2013).

[0090] After translation, the amino acid chain is cleaved by specific proteases at positions that result in the formation of a heavy chain of about 200 kDa and a light chain of about 80 kDa. The domain organization is usually characterized as A1-A2-B-A3-C1-C2. The light chain is composed of domains A3-C1-C2. The heavy chain consists mainly of domains A1-A2-B. The heavy chain found in plasma has a heterogeneous composition with a molecular weight of 90-200 kDa. The reasons for this are the heterogeneity of its glycosylation, the presence of splice variants and the presence of proteolytic products such as the B domain depleted heavy chain A1-A2. The amino acid sequence of full-length FVIII was identified by amino acids 20-2.351 of UniProtKB P00451 of sequence version 1 of July 21, 1986 (hereafter UniProtKBP00451.1).

[0091] According to one embodiment, the mammalian protein to which the main protein is similar or identical is human full-length FVIII, identified by amino acids 20 to 2,351 of UniProtKB P00451.1. According to another embodiment, the main protein is FVIII, from which at least a part of the B domain is deleted. In this regard, the entire B domain may be deleted. The deleted part of the B domain may be replaced by a linker, if necessary. The linker sequence has in particular the following amino acid sequence SFSQNSRHQAYRYRRG (SEQ ID NO: 12). An example of a FVIII, in which the B domain has been replaced by a linker, is Simoctocog alfa, the active ingredient of Nuwiq® or Vihum®. Simoctocog alfa has the following sequence: [ka] (SEQ ID NO:13)

[0092] VWF is a multimeric adhesive glycoprotein present in mammalian plasma that has multiple physiological functions. During primary hemostasis, VWF acts as a mediator between specific receptors on the platelet surface and components of the extracellular matrix, such as collagen. In addition, VWF functions as a carrier and stabilizing protein for the pro-coagulant factor VIII. VWF is synthesized in endothelial cells and megakaryocytes as a 2813 amino acid precursor molecule.

[0093] The domain organization of VWF is typically characterized as Til3-D3-TIL4-A1-A2-A3-D4-C1-C2-C3-CK.

[0094] The precursor polypeptide, pre-pro-VWF, consists of a 22-residue signal peptide, a 741-residue propeptide (domains D1-D2) and a 2050-residue polypeptide found in mature plasma von Willebrand factor (Fischer et al., 1994). Full-length VWF was identified by UniprotKB entry P04275 (entry version 224 of April 12, 2017).

[0095] The human VWF according to the invention has the amino acid sequence of any sequence of said UniprotKB P04275, in particular SEQ ID NO: 2 (isoform 1). VWF comprises two clusters of O-glycosylated amino acids. The first cluster of O-glycosylated amino acids is found between amino acids 1238-1268 of SEQ ID NO: 2. The second cluster comprises amino acids 1468-1487 of SEQ ID NO: 2.

[0096] Once secreted into plasma, VWF circulates in the form of various species with different molecular sizes. These VWF molecules consist of oligomers and multimers of a mature subunit of 2050 amino acid residues. VWF can usually be found in plasma as multimers ranging in size from about 500 to 20,000 kDa (Furlan et al., 1996).

[0097] According to one embodiment, the main protein has an amino acid sequence identical or similar to that of human mature VWF.

[0098] According to another embodiment, the main protein has an amino acid sequence that is similar or identical to the sequence of a fragment of human VWF.

[0099] For example, in a fragment of human VWF, one or more of the domains A1, A2, A3, D4, C1, C2, C3, CK may be deleted compared to human mature VWF (Til3-D3-TIL4-A1-A2-A3-D4-C1-C2-C3-CK). Til3-D3-TIL4-A1, Til3-D3-TIL4-A1-A2, Til3-D3-TIL4-A1-A2-A3, Til3-D3-TIL4-A1-A2-A3-D4, Til3-D3-TIL4-A1-A2-A3-D4-C1, Til3-D3-TIL4-A1-A2-A3-D4-C1-C2, and Til3-D3-TIL4-A1-A2-A3-D4-C1-C2-C3-CK The domain organization is selected from the group consisting of:

[0100] In this regard, a fragment of human VWF is in particular a fragment beginning with amino acid 764 of SEQ ID NO:2. Amino acids 764 to 1035 of SEQ ID NO:2 comprise the FVIII binding domain of VWF.

[0101] The main protein may comprise, for example, a fragment of VWF as defined in WO2015 / 185758A2. As shown in WO2015 / 185758, a complex of FVIII and a VWF fragment thereof as defined therein exhibits reduced binding to phospholipid membranes compared to FVIII alone and attenuated binding to collagen III and heparin compared to a complex of FVIII and full-length VWF.

[0102] Preferably, the fragment of VWF beginning at amino acid 764 of SEQ ID NO: 2 preferably ends at an amino acid in the range of 1905 to 2153 of SEQ ID NO: 2. According to one embodiment, the VWF fragment ends at an amino acid in the range of 2030 to 2153 of SEQ ID NO: 2. According to a further embodiment, the VWF fragment ends at an amino acid in the range of 2100 to 2153 of SEQ ID NO: 2.

[0103] According to one embodiment, the main protein has an amino acid sequence that is similar or identical to amino acids 764 to 1268 of SEQ ID NO:2. According to one embodiment, the amino acid sequence of the main protein has at least 90% identity to amino acids 764 to 1268 of SEQ ID NO:2. The amino acid sequence of the main protein also has at least 95% identity to amino acids 764 to 1268 of SEQ ID NO:2. Furthermore, the identity of the amino acid sequence of the main protein to amino acids 764 to 1268 of SEQ ID NO:2 is at least 98%. In particular, the amino acid sequence of the main protein has 100% identity to amino acids 764 to 1268 of SEQ ID NO:2.

[0104] According to one embodiment, the main protein has an amino acid sequence similar or identical to amino acids 764 to 1905 of SEQ ID NO:2. According to one embodiment, the amino acid sequence of the main protein has at least 90% identity to amino acids 764 to 1905 of SEQ ID NO:2. The amino acid sequence of the main protein also has at least 95% identity to amino acids 764 to 1905 of SEQ ID NO:2. Furthermore, the identity of the amino acid sequence of the main protein to amino acids 764 to 1905 of SEQ ID NO:2 may be at least 98%. In particular, the amino acid sequence of the main protein may have 100% identity to amino acids 764 to 1905 of SEQ ID NO:2.

[0105] The fusion protein may contain any number of extension peptides, such as 1, 2, 3, 4, 5, 6, 7, 8, 9 or 10 extension peptides. The fusion protein OCTA 12 contains two copies of an extension peptide and shows a significant increase in half-life compared to the VWF fragment OCTA 11. Thus, according to one embodiment, the fusion protein comprises at least two extension peptides.

[0106] At present, it is understood that the half-life extension effect is at least partially based on the negative charge of the O-glycan of the extension peptide. Therefore, an increase in the copy number of the extension peptide leads to a further increase in the half-life extension effect. This is confirmed by OCTA 14, which contains four copies of the extension peptide. Thus, according to one embodiment, the fusion protein contains at least four extension peptides.

[0107] On the other hand, the copy number of the extension peptide increases the chance that the extension peptide interferes with the structural integrity or activity, and thus the therapeutic effect, of the main protein. Thus, according to one embodiment, the number of extension peptides is less than 11. The fusion protein may contain further peptide components in addition to the main protein and the extension peptide.

[0108] In particular, in addition to the extension peptide according to the invention, the fusion protein may contain further peptides for half-life extension, such as CTP, XTEN, transferrin or a fragment thereof, albumin or a fragment thereof.

[0109] It is also possible that the main protein is a fragment of a mammalian protein and that the fusion protein contains a further fragment of the same mammalian protein. In particular, the two fragments are separated by one or more extended peptides. An example of such a protein is OCTA 15, which contains amino acids 764-1268 of VWF, two extended peptides with the sequence SEQ ID NO:1 and the "cysteine ​​knot domain" of VWF consisting of amino acids 2721-2813 of SEQ ID NO:2.

[0110] In a fusion protein, one or more extension peptides can be linked to the N-terminus or C-terminus of the main protein. In particular, a fusion protein can contain one or more extension peptides linked to the N-terminus and one or more extension peptides linked to the C-terminus of the main protein.

[0111] A fusion protein may contain further peptides in addition to the main protein and one or more extension peptides. Thus, the extension peptides may be directly or indirectly linked to the main protein. In this context, "directly linked" means that the amino acid sequences of the main protein and the extension peptides are directly adjacent. "Indirectly linked" means that an additional peptide is located between the main protein and the extension peptide. In particular, a linker peptide may be located between the main protein and the extension peptide. The linker may contain a cleavage site, allowing the extension peptide to be cleaved from the main protein.

[0112] The main protein, one or more extension peptides and optionally further peptides can be produced by joining genes, cDNAs or sequences encoding them. Thus, the main protein, one or more extension peptides and optionally further peptides are linked by peptide bonds. According to the present invention, the peptides of the fusion protein can alternatively be connected via other linkers such as chemical linkers or glycosidic bonds. Preferably, the peptides of the fusion protein are linked by peptide bonds.

[0113] According to one embodiment, the extension peptide is directly linked to the C-terminus of the main protein. In particular, the fusion protein comprises at least two consecutive extension peptides linked to the C-terminus of the main protein.

[0114] The fusion protein may be linked to two or more affinity tags. Examples of affinity tags are polyhistidine, protein A, glutathione S transferase, substance P, FLAG, streptavidin, and immunoglobulin heavy chain constant region. Although the affinity tag generally forms part of the amino acid sequence of the complete construct, the affinity tag is not considered as part of the fusion protein. One or more affinity tags are preferably linked to the C-terminus or N-terminus of the fusion protein. When the fusion protein is linked to one or more affinity tags, the fusion protein preferably includes a cleavage site between the affinity tag and the rest of the protein, allowing cleavage of the affinity tag, for example, by protease cleavage.

[0115] According to one embodiment, one extension peptide forms the N-terminus of the fusion protein. As explained above, the N-terminal amino acid of said extension peptide is optionally linked to an affinity tag. According to one embodiment, one extension peptide forms the C-terminus of the fusion protein. As explained above, the C-terminal amino acid of said extension peptide may optionally be linked to an affinity tag.

[0116] According to one embodiment, the fusion protein according to any of the preceding claims comprises at least 4, preferably at least 8, more preferably at least 1 additional O-glycan compared to the main protein.

[0117] According to one embodiment, the fusion protein comprises a dimerization domain. In particular, the main protein comprises a dimerization domain. In VWF, dimers are formed by binding of the CK domain. Thus, when the main protein is a VWF fragment, it preferably comprises a CK-domain.

[0118] An exemplary fusion protein according to the present invention is OCTA12, which has the following amino acid sequence (SEQ ID NO:3): [ka]

[0119] OCTA12 is a fusion protein of a VWF fragment of amino acids 764 to 1268 of SEQ ID NO:2 and two copies of an extension peptide ((bold)) linked to the C-terminus, consisting of amino acids 1238 to 1268 of SEQ ID NO:2.

[0120] According to one embodiment, the amino acid sequence of the fusion protein has at least 90% identity to SEQ ID NO: 3. The amino acid sequence of the fusion protein may also have at least 95% identity to SEQ ID NO: 3. The amino acid sequence of the fusion protein may also have at least 98% identity to SEQ ID NO: 3. In particular, the amino acid sequence of the fusion protein may have 100% identity to SEQ ID NO: 3.

[0121] The following sequence (SEQ ID NO:4) represents OCTA12 with an additional 12 amino acid signal peptide (bold and underlined). Expression of this peptide provides a monomeric form of OCTA12. The signal peptide is cleaved off. [ka] (SEQ ID NO:4)

[0122] According to one embodiment, the amino acid sequence of the fusion protein has at least 90% identity to SEQ ID NO: 4. The amino acid sequence of the fusion protein may also have at least 95% identity to SEQ ID NO: 4. The amino acid sequence of the fusion protein may also have at least 98% identity to SEQ ID NO: 4. In particular, the amino acid sequence of the fusion protein may have 100% identity to SEQ ID NO: 4.

[0123] A further representative fusion protein according to the present invention is Pro-OCTA 12, which comprises OCTA12 and a propeptide (bold) with a signal peptide (bold and underlined). Pro-OCTA12 is identified by SEQ ID NO:5: [ka] (SEQ ID NO:5)

[0124] Expression of Pro-OCTA 12 leads to the formation of a dimer, which remains after cleavage of the propeptide.

[0125] According to one embodiment, the amino acid sequence of the fusion protein has at least 90% identity to SEQ ID NO: 5. The amino acid sequence of the fusion protein may also have at least 95% identity to SEQ ID NO: 5. The amino acid sequence of the fusion protein may also have at least 98% identity to SEQ ID NO: 5. In particular, the amino acid sequence of the fusion protein may have 100% identity to SEQ ID NO: 5.

[0126] Further, a representative fusion protein according to the present invention is OCTA 14. OCTA 14 has the following amino acid sequence: [ka] (SEQ ID NO:6)

[0127] OCTA 14 is a fusion protein of a VWF fragment consisting of amino acids 764 to 1268 of SEQ ID NO:2 and four copies of an extension peptide (bold) bound to the C-terminus consisting of amino acids 1238 to 1268 of SEQ ID NO:2.

[0128] According to one embodiment, the amino acid sequence of the fusion protein has at least 90% identity to SEQ ID NO: 6. The amino acid sequence of the fusion protein may also have at least 95% identity to SEQ ID NO: 6. The amino acid sequence of the fusion protein may also have at least 98% identity to SEQ ID NO: 6. In particular, the amino acid sequence of the fusion protein may have 100% identity to SEQ ID NO: 6.

[0129] The following sequence (SEQ ID NO:7) represents OCTA 14 with an additional 12 amino acid signal peptide (bold and underlined). Expression of this peptide provides a monomeric form of OCTA 14. The signal peptide is cleaved. [ka] (SEQ ID NO:7)

[0130] According to one embodiment, the amino acid sequence of the fusion protein has at least 90% identity to SEQ ID NO: 7. The amino acid sequence of the fusion protein may also have at least 95% identity to SEQ ID NO: 7. There may also be 98% identity to the amino acid sequence of the fusion protein, SEQ ID NO: 7. In particular, the amino acid sequence of the fusion protein may have 100% identity to SEQ ID NO: 7.

[0131] A further exemplary fusion protein of the invention is Pro-OCTA 14, which comprises OCTA 14 and a propeptide (bold) with a signal peptide (bold and underlined). Pro-OCTA 14 is identified by SEQ ID NO:8: [ka] (SEQ ID NO:8)

[0132] According to one embodiment, the amino acid sequence of the fusion protein has at least 90% identity to SEQ ID NO: 8. The amino acid sequence of the fusion protein may also have at least 90% identity to SEQ ID NO: 8. The amino acid sequence of the fusion protein may also have at least 98% identity to SEQ ID NO: 8. In particular, the amino acid sequence of the fusion protein may have 100% identity to SEQ ID NO: 8.

[0133] Further, an exemplary fusion protein according to the present invention is OCTA 15. OCTA 15 has the following amino acid sequence: [ka] (SEQ ID NO:9)

[0134] OCTA 15 is a fusion protein of a VWF fragment consisting of amino acids 764 to 1268 of SEQ ID NO:2, two copies of an extension peptide (bold) bound to the C-terminus consisting of amino acids 1238 to 1268 of SEQ ID NO:2, and the "cysteine ​​knot domain" of VWF consisting of amino acids 2721 to 2813 of SEQ ID NO:2.

[0135] According to one embodiment, the amino acid sequence of the fusion protein has at least 90% identity to SEQ ID NO: 9. The amino acid sequence of the fusion protein may also have at least 95% identity to SEQ ID NO: 9. The amino acid sequence of the fusion protein may also have at least 98% identity to SEQ ID NO: 9. In particular, the amino acid sequence of the fusion protein can have 100% identity with SEQ ID NO:9.

[0136] The following sequence (SEQ ID NO: 10) represents OCTA 15 with an additional 12 amino acid signal peptide (bold and underlined). Expression of this peptide provides a dimeric form of OCTA 15. The signal peptide is cleaved. [ka] (SEQ ID NO:10)

[0137] According to one embodiment, the amino acid sequence of the fusion protein has at least 90% identity to SEQ ID NO: 10. The amino acid sequence of the fusion protein may also have at least 95% identity to SEQ ID NO: 10. The amino acid sequence of the fusion protein may also have at least 98% identity to SEQ ID NO: 10. In particular, the amino acid sequence of the fusion protein may have 100% identity to SEQ ID NO: 10.

[0138] A further representative fusion protein of the invention is Pro-OCTA 15, which comprises OCTA 15 and a propeptide (bold) with a signal peptide (bold and underlined). Expression of this sequence results in the formation of multimers. Pro-OCTA 15 is identified by SEQ ID NO: 11: [ka] (SEQ ID NO:11)

[0139] According to one embodiment, the amino acid sequence of the fusion protein has at least 90% identity to SEQ ID NO: 11. The amino acid sequence of the fusion protein may also have at least 95% identity to SEQ ID NO: 11. The amino acid sequence of the fusion protein may also have at least 98% identity to SEQ ID NO: 11. In particular, the amino acid sequence of the fusion protein may have 100% identity to SEQ ID NO: 11.

[0140] In one embodiment of the invention, the fusion protein is a modified FVIII protein based on Simoctocog alpha, carrying two or more copies of an extension peptide.

[0141] In this embodiment, it is preferably identical to or similar to the heavy chain of FVIII, in particular, amino acids 20 to 759 of UniprotKB P00451.1.

[0142] A fusion protein having a main protein identical or similar to the heavy chain of FVIII (in particular amino acids 20 to 759 of UniprotKB P00451.1) preferably further comprises a linker similar or identical to SEQ ID NO: 12, and further an amino acid sequence similar or identical to the light chain specified by amino acids 1668 to 2351 of UniprotKB entry P00451.1.

[0143] The extension peptide may be fused to the C-terminus of the light chain. Alternatively, the extension peptide is located between the heavy and light chains. In this regard, the extension peptide may be linked to the C-terminus or N-terminus of the linker. The extension peptide may also be replaced by a linker. Furthermore, the linker sequence may be interrupted by one or more extension peptides. It is also possible that the extension peptide is located both between the heavy and light chains and at the C-terminus of the light chain.

[0144] Preferably, the fusion protein, based on Simoctocog alpha, comprises from the N-terminus to the C-terminus the heavy chain of FVIII, the first part of the linker, two or more, preferably three, extension peptides (bold), the second part of the linker (underlined and bold) and the light chain. An example of such a protein is the protein identified by SEQ ID NO: 14: [ka] (SEQ ID NO:14)

[0145] According to one embodiment, the amino acid sequence of the fusion protein has at least 90% identity to SEQ ID NO: 14. The amino acid sequence of the fusion protein may also have at least 95% identity to SEQ ID NO: 14. The amino acid sequence of the fusion protein may also have at least 98% identity to SEQ ID NO: 14. In particular, the amino acid sequence of the fusion protein may have 100% identity to SEQ ID NO: 14.

[0146] Alternatively, the fusion protein based on Simoctocog alfa contains two or more, preferably three, extension peptides (bold) linked to the C-terminus of Simoctocog alfa. An example of such a protein is the protein identified by SEQ ID NO: 21. According to one embodiment, the amino acid sequence of the fusion protein has at least 90% identity to SEQ ID NO: 21. The amino acid sequence of the fusion protein may also have at least 95% identity to SEQ ID NO: 21. The amino acid sequence of the fusion protein may also have at least 98% identity to SEQ ID NO: 21. In particular, the amino acid sequence of the fusion protein may have 100% identity to SEQ ID NO: 21.

[0147] Polynucleotides According to a second aspect, the present invention provides an isolated polynucleotide comprising a nucleic acid sequence encoding a fusion protein according to the first aspect of the invention.

[0148] The isolated polynucleotide may be a DNA molecule or an RNA molecule. The isolated polynucleotide is preferably a DNA molecule, in particular a cDNA molecule. The techniques used to isolate or clone a polynucleotide encoding a peptide are known in the art and include isolation from genomic DNA, preparation from cDNA, or a combination thereof. Cloning of such polynucleotides from genomic DNA can be performed, for example, by using the well-known polymerase chain reaction (PCR) or antibody screening of expression libraries to detect cloned DNA fragments with common structural features (e.g., Innis et al., 1990) PCR: A Guide to Methods and Applications, Academic Press, New York. Other nucleic acid amplification procedures such as ligase chain reaction (LCR), ligation-activated transcription (LAT) and polynucleotide-based amplification (NASBA) may also be used.

[0149] In particular, the sequence of the isolated polynucleotide may comprise a first portion encoding a main protein and at least one second subsequence. The first portion is preferably similar or identical to SEQ ID NO: 15. The first portion preferably has a degree of sequence identity with SEQ ID NO: 15 of at least 80%, at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99%, or 100%.

[0150] At least one second portion is preferably similar or identical to SEQ ID NO: 16. The second portion preferably has a degree of sequence identity with SEQ ID NO: 16 of at least 80%, at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99%, or 100%.

[0151] The isolated polynucleotide may be a DNA molecule encoding a fusion protein having a similar or identical amino acid sequence to a sequence selected from the group consisting of SEQ ID NO:4, SEQ ID NO:5, SEQ ID NO:7, SEQ ID NO:8, SEQ ID NO:10, SEQ ID NO:11, SEQ ID NO:14 and SEQ ID NO:21.

[0152] In particular, the isolated polynucleotide may be a DNA molecule encoding a fusion protein having an amino acid sequence that has at least 90%, preferably at least 90%, preferably at least 95%, more preferably at least 98%, and most preferably 100% identity to SEQ ID NO:4. Alternatively, the isolated polynucleotide may be a DNA molecule encoding a fusion protein having an amino acid sequence that has at least 90% identity. Furthermore, the isolated polynucleotide may be a DNA molecule encoding a fusion protein having an amino acid sequence that has at least 90%, preferably at least 95%, more preferably at least 98%, and most preferably 100% identity to SEQ ID NO:5. According to one embodiment, the isolated polynucleotide is a DNA molecule encoding a fusion protein having an amino acid sequence that has at least 90%, preferably at least 95%, more preferably at least 98%, and most preferably 100% identity to SEQ ID NO:7. According to one embodiment, the isolated polynucleotide is a DNA molecule encoding a fusion protein having an amino acid sequence that has at least 90%, preferably at least 95%, more preferably at least 98%, and most preferably 100% identity to SEQ ID NO:8. According to one embodiment, the isolated polynucleotide is a DNA molecule encoding a fusion protein having an amino acid sequence with at least 90%, preferably at least 95%, more preferably at least 98%, and most preferably 100% identity to SEQ ID NO: 10. According to one embodiment, the isolated polynucleotide is a DNA molecule encoding a fusion protein having an amino acid sequence with at least 90%, preferably at least 95%, more preferably at least 98%, and most preferably 100% identity to SEQ ID NO: 11. According to one embodiment, the isolated polynucleotide is a DNA molecule encoding a fusion protein having an amino acid sequence with at least 90%, preferably at least 95%, more preferably at least 98%, and most preferably 100% identity to SEQ ID NO: 14.According to one embodiment, the isolated polynucleotide is a DNA molecule encoding a fusion protein having an amino acid sequence having at least 90%, preferably at least 95%, more preferably at least 98%, and most preferably 100% identity to SEQ ID NO:21.

[0153] The isolated polynucleotide can be a DNA molecule having a sequence similar or identical to a sequence selected from the group consisting of SEQ ID NO:17, SEQ ID NO:18, SEQ ID NO:19, SEQ ID NO:20 and SEQ ID NO:22.

[0154] According to one embodiment, a single strand of the isolated polynucleotide has at least 80%, at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99%, or 100% sequence identity to SEQ ID NO:17.

[0155] According to further embodiments, the isolated polynucleotide has at least 80%, at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99%, or 100% sequence identity to SEQ ID NO:18. According to yet other embodiments, the isolated polynucleotide has at least 80%, at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99%, or 100% sequence identity to SEQ ID NO:19. According to one embodiment, the isolated polynucleotide has at least 80%, at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99%, or 100% sequence identity to SEQ ID NO:20. According to one embodiment, the isolated polynucleotide has at least 80%, at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99%, or 100% sequence identity to SEQ ID NO:20. According to one embodiment, the isolated polynucleotide has at least 80%, at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99%, or 100% sequence identity to SEQ ID NO:20.

[0156] List of Polynucleotide Sequences SEQ ID NO: 15: DNA encoding OCTA 11 (AA 1-1268 of SEQ ID NO: 2) SEQ ID NO: 16: DNA encoding the extended peptide (SEQ ID NO: 1) SEQ ID NO: 17: DNA encoding Pro-OCTA 12 (SEQ ID NO: 5) SEQ ID NO: 18: DNA encoding Pro-OCTA 14 (SEQ ID NO: 8) SEQ ID NO: 19: DNA encoding Pro-OCTA 15 (SEQ ID NO: 11) SEQ ID NO: 20: DNA encoding Simoctocog alfa with three extension peptides in the linker region (SEQ ID NO: 14) SEQ ID NO: 22: DNA sequence encoding Simoctocog alfa with three C-terminal extension peptides (SEQ ID NO: 21)

[0157] Expression vector In a third aspect, the present invention also relates to an expression vector comprising a polynucleotide according to the second invention aspect.

[0158] Preferably, the expression vector further contains regulatory elements, such as a promoter, and transcriptional and translational stop signals. The polynucleotide according to the second aspect and the polynucleotide of the control element can be ligated together to produce a recombinant expression vector, which may contain one or more restriction sites allowing for insertion or substitution of a polynucleotide encoding a polypeptide at such site. The polynucleotides can be inserted into an appropriate expression vector for expression. In creating an expression vector, a coding sequence is placed into the expression vector such that the coding sequence is operably linked to the appropriate control sequences for expression.

[0159] The recombinant expression vector may be any vector (eg a plasmid or virus), which can be conveniently subjected to recombinant DNA procedures and can bring about the expression of the polynucleotide of the fourth aspect of the invention. The choice of expression vector will typically depend on the compatibility of the expression vector with the host cell into which the expression vector is to be introduced. The expression vector may be a linear or closed circular plasmid.

[0160] The expression vector is preferably adapted for expression in mammalian cells. An expression vector may be an autonomously replicating vector, ie, a vector that exists as an extrachromosomal entity, the replication of which is independent of chromosomal replication, eg, a plasmid, an extrachromosomal element, a minichromosome, or an artificial chromosome. For autonomous replication, the vector may further comprise an origin of replication that enables the vector to replicate autonomously in the host cell in question. The origin of replication may be any plasmid origin of replication that mediates autonomous replication functional within a cell. The term "origin of replication" or "plasmid replicator" means a polynucleotide that enables a plasmid or vector to replicate in vivo.

[0161] The vector is preferably one which, when introduced into a host cell, is integrated into the genome and replicated together with the chromosome(s) into which it has been integrated. For integration into the genome of the host cell, the expression vector may rely on any of the other elements of the expression vector for integration into the genome by homologous or non-homologous recombination. Alternatively, the vector may contain additional polynucleotides for integration into the genome of the host cell by homologous recombination at a precise location(s) in the chromosome(s).

[0162] The vectors of the present invention preferably contain one or more (eg, several) selectable markers that allow easy selection of transformed, transfected, transduced, cells, etc. A selectable marker is a gene the product of which provides for biocide or viral resistance, resistance to heavy metals, prototrophy by auxotrophs, and the like.

[0163] The procedures used to ligate the above-described elements to construct the recombinant expression vectors of the present invention are well known to those of skill in the art (see, for example, Sambrook et al., 1989, supra).

[0164] According to one embodiment, the vector backbone of the vector according to the third aspect is selected from pCDNA3, pCDNA3.1, pCDNA4, pCDNA5, pCDNA6, pCEP4, pCEP-puro, pCET1019, pCMV, pEF1, pEF4, pEF5, pEF6, pExchange, pEXPR, pIRES, and pSCAS.

[0165] host cell According to a fourth aspect, the present invention provides a host cell comprising an expression vector according to the third aspect of the invention. As stated above, the expression vector according to the third aspect is introduced into a host cell such that the expression vector is maintained as a chromosomal integrant or as an autonomously replicating extra-chromosomal vector. The term "host cell" encompasses any progeny of a parent cell that is not identical to the parent cell due to mutations that occur during replication. The choice of a host cell will largely depend on the gene encoding the polypeptide and its source.

[0166] According to one embodiment, the fusion protein is produced by expression in a mammalian host cell line. The fusion protein is preferably produced in a human host cell line. Generally, any human host cell line is suitable for expressing the fusion protein. Preferred glycosylation of the fusion protein is obtained, in particular, using a human kidney cell line. A preferred human kidney cell line is the HEK cell line, in particular the HEK293 cell line.

[0167] Examples of HEK cell lines for the production of glycosylated polypeptides are HEK 293 F, Flp-In™-293 (Invitrogen, R75007), 293 (ATCC® CRL-1573), 293 EBNA, 293 H (ThermoScientific 11631017), 293S, 293T (ATCC® CRL-3216™), 293T / 17 (ATCC® CRL11268™), 293T / 17 SF (ATCC® ACS4500™), HEK 293 STF (ATCC® CRL3249™), HEK-293.2sus (ATCC® CRL-1573™). A preferred cell line for production of polypeptides is the HEK 293 F cell line. Other suitable cell lines as host cells for expression include cell lines derived from human myeloid leukemia cells.

[0168] Particular examples of host cells are K562, NM-F9, NM-D4, NM-H9D8, NM-H9D8-E6, NM H9D8-E6Q12, GT-2X, GT-5s, and cells derived from any of the aforementioned host cells. K562 is a human myeloid leukemia cell line present in the American Type Culture Collection (ATCC CCL-243). The remaining cell lines were derived from K562 cells and were selected for specific glycosylation characteristics.

[0169] Use of fusion proteins As shown in the examples, i.e. for example in the fusion proteins OCTA 12 and OCTA 14, the extension peptide of SEQ ID NO: 1 not only leads to an increase in the half-life of the fusion protein compared to a fragment of the main protein, i.e. VWF. The fusion proteins OCTA 12 and OCTA 14 also lead to an increase in the half-life of FVIII when administered to patients together with FVIII, a binding partner of VWF.

[0170] Thus, according to a fifth aspect, the present invention provides the use of a fusion protein according to the first aspect for increasing the half-life of a second protein, wherein the fusion protein is capable of binding to said second protein.

[0171] The use is also described as a method of administering a therapeutic protein to a patient, which method comprises administering a therapeutic protein, such as a FVIII protein together with a fusion protein according to the first embodiment.

[0172] Compositions and protein complexes Therefore, the concept according to the present invention, i.e. the extension of half-life provided by the extension peptide, is not limited to fusion proteins, but in addition the half-life of a second protein bound by the fusion protein may also be extended.

[0173] Thus, according to a sixth aspect, the present invention provides a composition of a first protein and a second protein, wherein said first protein is a fusion protein of the first aspect and is capable of binding to said second protein, and said second protein is a therapeutic protein comprising an amino acid sequence which is identical or similar to the amino acid sequence of a second mammalian protein or a fragment thereof.

[0174] A first protein can be bound, covalently or non-covalently, to a second protein to form a complex. Therefore, the present invention also relates to a complex of a first protein and a second protein, wherein said first protein is a fusion protein according to the first aspect and said second protein has an amino acid sequence identical or similar to the amino acid sequence of a second mammalian protein or a fragment thereof. Thus, the complex is formed by non-covalently binding a first protein to a second protein.

[0175] According to one embodiment, the first protein is covalently bound to the second protein. The linker that facilitates the binding of the first and second proteins may be selected from a disulfide bridge, a peptide bond, a chemical linker, or a glycosidic bond.

[0176] Alternatively, the first protein is non-covalently bound to the second protein. For non-covalent binding, the first protein comprises in particular a specific binding domain that enables it to bind to said second protein, ie the second protein binding domain. Depending on the location of the one or more extension peptides in the sequence of the first protein, they may be located at different positions in the first protein. Preferably, the one or more extension peptides are positioned in a position that is exposed to the surface in the folded state of the protein. The one or more extension peptides can be positioned at any position relative to the binding site of the second protein, for example, a binding domain.

[0177] According to one embodiment of the composition, the one or more extension peptides are positioned in a position in the folded state of the first protein that does not prevent the first protein from binding to the second protein.

[0178] According to one embodiment, the half-life of a second protein (e.g., FVIII) bound to a first protein (e.g., a fragment of VWF) is increased compared to the free form of the second protein (e.g., FVIII protein).

[0179] Preferably, the half-life of a second protein (e.g., a FVIII protein) conjugated to a first protein (e.g., OCTA 12) is increased compared to said second protein conjugated to a native mammalian protein (e.g., mature VWF).

[0180] More preferably, the amount of a second protein (e.g., a FVIII protein) bound to a first protein (e.g., OCTA 12) is increased compared to the amount of said second protein bound to a main protein without a fusion protein (e.g., OCTA 11).

[0181] The second mammalian protein may be selected from the same list identified for the mammalian protein above. However, in the composition or complex, the protein of the second mammal is not the same as the protein of the first mammal.

[0182] According to one embodiment, the protein of the second mammal is a blood protein, in particular a human blood protein. Preferably, the second mammalian protein is a clotting factor, in particular a human clotting factor.

[0183] According to one embodiment, the second mammalian protein, to which the main protein is similar or identical, is human full length FVIII, defined by amino acids 20 to 2351 of UniProtKB P00451.1. According to another embodiment, the main protein is FVIII, wherein at least a portion of the B domain is deleted. In this regard, the entire B domain may be deleted. The deleted portion of the B region is optionally replaced with a linker. The linker sequence in particular has the following amino acid sequence SFSQNSRHQAYRYRRG (SEQ ID NO: 12). An example of a FVIII in which the B domain has been replaced by a linker is Simoctocog alfa (SEQ ID NO: 13), the active ingredient of Nuwiq® or Vihuma®.

[0184] According to one embodiment, the FVIII protein is a human FVIII protein in a patient with a reduced immune response.

[0185] The reduction of the immune response of the FVIII protein is preferably based on binding to the SIGLECs SIG-5, SIG-7, SIG-8 and SIG-9. Without wishing to be bound by theory, it is believed that binding to SIGLECS on antigen presenting cells (such as dendritic cells) results in the downregulation of proinflammatory and upregulation of immunosuppressive receptor expression on the cell surface. Binding also results in enhanced production of anti-inflammatory cytokines and reduced production of pro-inflammatory cytokines, and consequently inhibition of T cell proliferation and antibody production. Thus, when a glycosylated polypeptide is administered to a patient, binding of the SIGLECs, SIG-5, SIG-7, SIG-8 and SIG-9, results in a decreased immune response or increased immune tolerance.

[0186] SIGLEC binding, and therefore the reduced immune response, is based on an increased number or percentage of sialylated core 2 and / or extended core 1 O-glycans compared to the number of sialylated core 2 and / or extended core 1 O-glycans of naturally occurring human FVIII.

[0187] Thus, according to one embodiment, the FVIII protein exhibits an increased number or percentage of sialylated core 2 and / or extended core 1 O-glycans in the glycosylated protein compared to the number of sialylated core 2 and / or extended core 1 O-glycans in native human FVIII.

[0188] In the case where the second protein is a FVIII protein, the main protein of the first protein is preferably a fragment of VWF that contains the FVIII binding domain, enabling it to bind to the FVIII protein.

[0189] According to one embodiment of the composition, the first protein has an amino acid sequence having at least 95%, preferably at least 98%, more preferably 100% identity to SEQ ID NO:3, and the second protein has an amino acid sequence having at least 95%, preferably at least 98%, more preferably 100% identity to SEQ ID NO:13.

[0190] According to one embodiment of the composition, the first protein has an amino acid sequence having at least 95%, preferably at least 98%, more preferably 100% identity to SEQ ID NO:6, and the second protein has an amino acid sequence having at least 95%, preferably at least 98%, more preferably 100% identity to SEQ ID NO:13.

[0191] According to one embodiment of the composition, the first protein comprises an amino acid sequence having at least 95%, preferably at least 98%, more preferably 100% identity to SEQ ID NO:9, and the second protein has an amino acid sequence having at least 95%, preferably at least 98%, more preferably 100% identity to SEQ ID NO:13.

[0192] Since in a patient's blood, a fusion protein containing a fragment of VWF, particularly OCTA 12, competes with endogenous VWF for binding to FVIII protein, it is preferred that the composition contains a fusion protein containing a fragment of VWF, particularly OCTA 12, in molar excess compared to FVIII protein.

[0193] Preferably, the molar ratio of the first protein to the second protein is in the range of 0.1-250, preferably in the range of 0.5-50, more preferably in the range of 1-25, and most preferably in the range of 2-10.

[0194] To form a stable non-covalent complex and thus allow for an extension of the half-life of the second protein, the equilibrium dissociation constant (K D The binding affinity of the first protein to the second protein, as defined by (A) should be less than 10 μM. Preferably, the equilibrium dissociation constant of the VWF fragment in the first protein with respect to the FVIII protein is in the range of 0.05 to 3 nM.

[0195] The first and second proteins may be produced by separate recombinant expression and then subsequently combined. Alternatively, the first and second proteins are recombinantly expressed in the same cell. To this end, the first and second proteins may be encoded on the same vector or on two different vectors.

[0196] The VWF constructs used in the examples, i.e. OCTA 12, OCTA 14 and OCTA 15, are expressed in their proprotein form, leading to dimerization or, in the case of OCTA 15, multimerization. These dimers remain intact even after cleavage of the propeptide and, as a result, each copy of the VWF construct in the dimer is able to bind to the FVIII protein. Thus, according to one embodiment, the complex comprises two copies of a first and a second protein, where the two copies of the first protein form a dimer, this dimer of the first protein is preferably a non-covalent dimer.

[0197] Pharmaceutical compositions and uses As described above, the fusion protein of the first aspect, the composition of the sixth aspect and the complex of the seventh aspect of the present invention have the advantage that they have a longer half-life in the blood of a patient and therefore an increased therapeutic effect on the patient. Thus, the fusion protein of the first aspect, the composition of the sixth aspect and the conjugate of the seventh aspect are particularly useful as active ingredients for therapy. Preferably, they are useful in the treatment or prevention of bleeding disorders. The fusion proteins of the first aspect, the compositions of the sixth aspect, and in particular the protein complexes, described herein may be administered alone or in the form of a pharmaceutical composition.

[0198] Thus, according to an eighth aspect, the present invention provides a pharmaceutical composition of a fusion protein of the first aspect, a composition of the sixth aspect and a conjugate according to the seventh aspect.

[0199] According to the present invention, a pharmaceutical composition may comprise an effective amount of the fusion protein of the first aspect, the composition of the sixth aspect, and the conjugate of the seventh aspect, formulated with at least one pharma- ceutically acceptable carrier. The pharmaceutical compositions of the embodiments may be prepared and administered to a subject by any method well known in the art of pharmacy. For example, see below. "The Pharmacological Basis of Therapeutics" by Goodman & Gilman, eds. Hardman et al., McGraw-Hill Professional (10th ed., 2001); Remington: The Science and Practice of Pharmacy, edited by Gennaro, Lippincott Williams & Wilkins (20th ed., 2003); and Pharmaceutical Dosage Forms and Drug Delivery Systems, Ansel et al. (eds.), Lippincott Williams & Wilkins (7th ed., 1999). Additionally, pharmaceutical compositions of the embodiments may be formulated to include other medically useful drugs or biologics. A pharmaceutical composition typically contains a therapeutically effective amount of the fusion protein or protein complex in combination with a pharma- ceutically acceptable carrier. A pharma- ceutically acceptable carrier is any carrier known or established in the art. Exemplary pharma- ceutically acceptable carriers include sterile pyrogen-free water and sterile pyrogen-free saline. Other forms of pharma- ceutically acceptable carriers that can be used in this embodiment include binders, disintegrants, surfactants, absorption enhancers, humectants, absorbents, lubricants, fillers, extenders, humectants, preservatives, stabilizers, emulsifiers, solvents, salts for controlling osmotic pressure, diluents such as buffers, and excipients that are commonly used depending on the form of use of the formulation. These are used selectively as desired depending on the unit dose of the preparation to be obtained.

[0200] Thus, a ninth aspect of the invention also relates to a method of treating or preventing a bleeding disorder in a patient, the method comprising administering to said patient a pharmaceutical composition according to the eighth aspect.

[0201] As used herein, "bleeding disorder" refers to a disease or condition that impairs normal hemostasis. The bleeding disorder can be, for example, hemophilia A, hemophilia B, factor VIII deficiency, factor XI deficiency, von Willebrand's disease, Glanzmann's Thrombasthenia, Bernard-Soulier syndrome, idiopathic thrombocytopenic purpura, intracerebral hemorrhage, trauma, traumatic brain injury, and the like.

[0202] "Hemophilia" as used herein refers to a group of bleeding disorders associated with increased blood clot formation time compared to the blood clot formation time in healthy individuals without hemophilia. Hemophilia includes hemophilia A, a disorder that results in the production of defective factor VIII, hemophilia B, a disorder that results in the production of defective factor IX, and acquired hemophilia A, a rare bleeding disorder caused by autoantibodies against clotting factor (F) VIII.

[0203] The bleeding disorder is preferably hemophilia A or B. The treatment may be, for example, hemophilia treatment for PUPS (previously untreated patients) or immune tolerance induction (ITI) treatment and / or other related treatments for hemophilia.

[0204] For in vivo applications, the pharmaceutical compositions may be administered to a patient by any conventional route of administration, such as, for example, orally, parenterally, or by inhalation. Parenteral administration includes intravenous injections, subcutaneous injections, intraperitoneal injections, intramuscular injections, solutions, suspensions, emulsions and drops. For parenteral administration, the pharmaceutical composition should be an injectable preparation, such as a solution or suspension.

[0205] In other embodiments, the pharmaceutical composition is administered to the patient orally. In these embodiments, the drug forms include solid formulations such as tablets, coated tablets, powders, granules, capsules and pills; liquid formulations such as solutions (e.g. eye drops, nose drops), suspensions, emulsions and syrups; inhalants such as aerosols, atomizers and nebulizers; and liposome encapsulated formulations. In yet some other embodiments, the glycosylated polypeptide, protein complex or pharmaceutical composition is administered by inhalation into the patient's airways to target the trachea and / or lungs of the subject.

[0206] According to one embodiment of the eighth aspect, the use comprises intravenous or non-intravenous injection. The non-intravenous injection is preferably a subcutaneous injection.

[0207] All publications and patents cited in this disclosure are incorporated by reference in their entirety. To the extent that the material incorporated by reference contradicts or is inconsistent with the present specification, the present specification will control over such material.

[0208] Working Example Example 1 Recombinant expression of VWF protein The following recombinant VWF proteins were transiently expressed in the HEK cell line 293F with a C-terminal Strep tag and purified by StrepTactin affinity chromatography (IBA GmbH). - OCTA 11 - OCTA 12 OCTA 12 is a fusion protein according to the present invention. OCTA 11 is a comparative VWF fragment. The VWF protein is shown diagrammatically in FIG. Expression of the Pro-protein leads to the formation of a dimer. The peptide dimer remains after cleavage of the propeptide.

[0209] Gene synthesis and cloning As a first step, the gene encoding the proprotein of the VWF protein was synthesized by GeneArt (Thermo Fisher Scientific). -Pro-OCTA 11 -Pro-OCTA 12 The genes encoding the proproteins were cloned into the pDSG expression vector (IBA GmbH), containing a Twin-Strep tag. Individual cultures of TOP10 E. coli (IBA GmbH) were transformed with the vector constructs and single clones were selected after overnight incubation at 37° C. on ampicillin-containing LB agar plates. Plasmid DNA was prepared using the QIAamp DNA Mini or Maxi kit (Qiagen) according to the manufacturer's recommendations. The integrity of the vector was confirmed by sequencing, in particular the correct orientation and integrity of the genes encoding Pro-OCTA 11 and Pro-OCTA 12.

[0210] Protein expression For eukaryotic expression of VWF protein, MEXi-293 cells (IBA GmbH) grown in MEXi transfection medium (IBA GmbH) were transfected with 1.5 mg / l of constructs using 4.5 mg / ml of 25 kDa linear polyethyleneimine. After 2-4 hours of incubation at 37°C, 5% CO2 and 100-150 rpm, the culture was diluted 1:2 with MEXi transfection medium and continued to grow until cell viability reached 75%. The supernatant was then separated from the cells by centrifugation at 300 xg at 4°C. To minimize the inhibitory effect of biotin in the cell culture medium and to adjust the pH, 0.1 volume of buffer (1 M Tris-HCl, 1.5 mM NaCl, 10 mM EDTA, pH 8.0) and 0.09% (v / v) BioLock solution (IBA GmbH) was added to the supernatant and incubated at 4° C. for 20 min.

[0211] Protein purification After centrifugation, the supernatant was applied to a Strep-Tactin XT column (IBA GmbH), washed five times with wash buffer (100 mM Tris-HCl, 150 mM NaCl, 1 mM EDTA, pH 8.0), and bound Strep-tag-containing proteins were eluted with elution buffer (100 mM Tris-HCl, 150 mM NaCl, 1 mM EDTA, 10 mM desthiobiotin, pH 8.0).

[0212] Example 2 Effect of full-length VWF or VWF protein on the half-life of FVIII when co-administered with FVIII in FVIII / VWF double knockout (DKO) mice 2.1 Background In this experiment, the effect of VWF protein produced according to Example 1 and full-length, plasma-derived VWF (pdVWF) on the half-life of FVIII was examined. Full-length VWF and FVIII are known to be binding partners that form a non-covalent complex. The half-life of FVIII in the circulation is determined primarily by the circulating half-life of VWF. In serum, endogenous VWF competes with the administered VWF protein (fragment) for binding to FVIII, and this competition will have an effect of any administered VWF protein on the half-life of FVIII. Therefore, in the present experiments, C57Bl / 6 mice, double knockout for FVIII and VWF (FVIII / VWF-DKO), were used as a model organism to evaluate the effect of VWF on the half-life of FVIII.

[0213] 2.2 Experimental procedure 2.2.1 Products containing FVIII The following FVIII-containing products were produced: 1) FVIII alone 2) FVIII and OCTA 11 3) FVIII and OCTA 12 4) FVIII and pdVWF VWF proteins OCTA 11 and OCTA 12 were prepared as described in Example 1. pdVWF was a VWF concentrate, "Wilate" (Octapharma). The FVIII was a B-domain deleted human cell line FVIII (Nuwiq, Octapharma). Nuwiq products contain the following buffer compositions: Arginine hydrochloride 25.6mM Sucrose 15.8mM NaCl 308mM Pluronic F68 0.14mM Sodium citrate 3.6mM Calcium chloride 2.0mM In the FVIII-containing products 2) to 4), the molar ratio of VWF protein to FVIII was 5:1. VWF protein has been added to the Nuwiq product (FVIII).

[0214] 2.2.2 FVIII / VWF-DKO mouse strains C57Bl / 6 mice with FVIII and VWF double knockout (FVIII / VWF-DKO) were used.

[0215] 2.2.3 Product Administration The four FVIII-containing products were administered to 20 FVIII / VWF-DKO mice via tail vein injection at a dose of 240 IU FVIII / kilogram (~6 IU / mouse).

[0216] 2.2.4 Sampling and analysis Blood samples of the mice were taken 5 minutes and 1, 4, 8, 12, 24, 36 and 48 hours after treatment with the FVIII-containing products. Blood samples were obtained from the retro-orbital plexus of the mice. For each time point, blood samples from 5 mice per FVIII-containing product were obtained and analyzed individually. Each mouse was sampled at 5 min and up to two further time points. FVIII activity in each blood sample was analyzed using a chromogenic assay (CHROMOGENIX).

[0217] 2.3 Results Using the FVIII activity values ​​in the blood samples, the time course of FVIII activity for each of the FVIII-containing products was determined, as shown in FIG. For each time point and FVIII-containing product, blood samples from five animals were measured, and each data point in the diagram in Figure 2 represents the average of five values. Additionally, FVIII activity at each time point was given as % FVIII activity 5 min after treatment, which was defined as 100% activity for each of the FVIII-containing products. The half-lives of FVIII in the five products were calculated using linear regression analysis of the log-linear portion of the individual plasma concentration-time curves after curve fitting or by non-linear regression using one-phase exponential decay model. The software programs used for the calculations are GraphPad Prism version 6.07 (La Jolla, CA 92037, USA) and WinNonlin, version 6.4 (Pharsight, Mountain View, CA, USA).

[0218] The calculation is based on the following formula:

number

[0219] The results are summarized in Table 1. [Table 1]

[0220] From these figures it is clear that co-administration of FVIII with any of the VWF proteins results in an increased half-life. Coadministration of FVIII with pdVWF results in a ∼4.6-fold increase in the half-life of FVIII (0.31). FVIII co-administered with the VWF protein OCTA 11 showed a comparable increase in half-life of 0.45 hours (approximately a 1.4-fold increase). Surprisingly, co-administration of VWF with the protein OCTA 12 confers a FVIII half-life of 1.03 hours, which represents an increase of about 3.2-fold compared to flVWF, a factor of 14.7-fold compared to FVIII. The results indicate that the additional O-glycan repeats present in OCTA 12 confer a significant half-life extending effect on the VWF fragment and subsequently on the VWF / FVIII complex. The results also show that adding copies of clusters of authentic O-glycans can increase the half-life of a protein.

[0221] Example 3 Pharmacokinetic profile of FVIII and VWF OCTA 12 after IV and subcutaneous (SQ) injections in minipigs 3.1 Background SQ delivery of drugs is becoming increasingly interesting in the field of coagulation factors. However, due to very low recovery, this route has not yet been applicable for the administration of FVIII. Minipigs are the best-known animal model for testing SQ administration of drugs, due to their close similarity to the human structure of the epidermis. The aim of this study was to evaluate the half-life of VWF OCTA 12 and FVIII when administered alone or in a 5-fold molar excess with OCTA 12 via the SQ route to minipigs. Additionally, the half-life of FVIII when administered alone via the conventional IV route was compared to FVIII administered SQ with or without VWF OCTA 12.

[0222] 3.2 Experimental procedure Nine female Aachener minipigs, aged 10-14 months, were used in this study. Body weight ranged from 13.7 to 19.5 kg. IV injections were given in the lateral ear vein and SQ injections were under the skin in the inguinal region. The dose was 100 U FVIII / kg body weight (BW), with 3 animals per group treated with each product: -Group 1: FVIII alone SQ -Group 2: OCTA 12 and FVIII SQ -Group 3: FVIII alone IV

[0223] Sufficient blood was drawn from the jugular vein (vena jugularis) of all animals at the following time points: 0 (pre-dose), 0.5, 1, 2, 4, 8, 24, 32, 48, 72, 96 and 120 hours post-dose to obtain 2 x 200 μL of sodium citrate plasma per animal and sampling time, respectively. Whole blood was collected into tubes containing sodium citrate (0.15 M) as anticoagulant and immediately cooled using an IsoTherm-Rack system (Eppendorf). Within 30 minutes of blood collection, plasma was separated by centrifugation. Immediately after centrifugation, plasma samples were frozen and stored at -20°C or below until shipping. Each sample was tested for FVIII antigen using an Asserachrom assay kit (Diagnostica Stago). OCTA 12 was quantified using an ELISA assay as follows: Strep-Tactin® XT coated microplates (IBA GmbH) were blocked with blocking buffer (1% BSA in PBS) for 2 h at RT. Plasma samples were diluted 1:15 in blocking buffer and applied onto the plate. After 2 hours of incubation at 37° C., VWF fragments were detected with an anti-VWF pAb (Dako P0226). After each incubation, the plates were washed three times with 0.1% Tween in PBS. Pharmacokinetic evaluation of analytical data was performed using WinNonlin, version 6.4 (Pharsight Corporation, Mountain View, Calif., USA).

[0224] 3.3 Results FIG. 3 shows the time course of VWF OCTA12 concentration in miniature pig plasma after SQ administration of a FVIII / VWF OCTA12 mixture. As summarized in Table 2, OCTA12 circulated with a half-life of 219.31. Half-lives were determined as described in Example 2.

[0225] [Table 2]

[0226] In pigs with von Willebrand disease (VWD), the half-life of full-length recombinant human (rhVWF) is ~10 to 16 hours, and the half-life of plasma-derived porcine VWF is 10 to 18 hours (Nichols et al.). The half-life of a VWF fragment containing only the FVIII binding domain is shorter than the half-life of flVWF in VWF-deficient mice, as shown by Yee et al. Thus, the half-life of OCTA 12 is approximately 14-22 times longer than the half-life of rhVWF in pigs. Furthermore, a significant prolongation effect on FVIII half-life was also observed. As shown in Figure 4 and summarized in Table 3, when administered with OCTA 12, FVIII has a half-life of 25.3 hours. This represented a 6.7-fold increase in half-life compared to FVIII administered alone via the same route (SQ) and a 3.9-fold improvement compared to FVIII administered alone via the traditional IV route.

[0227] [Table 3]

[0228] Many modifications and other embodiments of the inventions described herein will come to mind to one skilled in the art to which these inventions pertain having the benefit of the teachings presented in the foregoing descriptions and the associated drawings. Therefore, it is to be understood that the invention is not to be limited to the specific embodiments disclosed and that modifications and other embodiments are intended to be included within the scope of the appended claims. Although specific terms are employed herein, they are used in a generic and descriptive sense only and not for purposes of limitation.

[0229] References Birken S, Canfield RE. Isolation and amino acid sequence of COOH-terminal fragments from the beta subunit of human choriogonadotropin. J Biol Chem. 1977; vol. 252 pg. 5386-5392 Ewenstein BM, Collins P, Tarantino MD, Negrier C, Blanchette V, Shapiro AD, Baker D, Spotts G, Sensel M, Yi SE, Gomperts ED. Hemophilia therapy innovation development of an advanced category recombinant factor VIII by a plasma / albumin-free method Proceedings of a Special Symposium at the XIXth Congress of the International Society on Thrombosis and Haemostasis; 2004, vol. 41, pg. 1-16. Fischer B, Mitterer A, Schlokat U, DenBouwmeester R, Dorner “Structural analysis of recombinant von Willebrand factor: identification of hetero- and homo-dimers” FFEBS Lett. 1994 Sep 12;351(3):345-8. Erratum in: FEBS Lett 1994 Oct 24;353(3):337. Furlan M. “Von Willebrand factor: molecular size and functional activity” Ann Hematol. 1996 Jun;72(6):341-8. Kannicht C, Ramstrom M, Kohla G, et al. Characterisation of the post-translational modifications of a novel, human cell line-derived recombinant human factor VIII. Thromb Res. 2013;131(1):78-88. Needleman SB, Wunsch CD. A general method applicable to the search for similarities in the amino acid sequence of two proteins. J Mol Biol. 1970; vol. 48(3); pg. 443-453. Nichols TC, Bellinger DA, Merricks EP, et al. Porcine and Canine von Willebrand Factor and von Willebrand Disease: Hemostasis, Thrombosis, and Atherosclerosis Studies. Thrombosis. 2010;2010:461238. Strohl WR. Fusion Proteins for Half-Life Extension of Biologics as a Strategy to Make Biobetters. BioDrugs. 2015 Aug; vol. 29(4), pg. 215-239. Tiede A. Half-life extended factor VIII for the treatment of hemophilia A. J Thromb Haemost. 2015 Jun; vol. 13 Suppl 1; pg. S176-179 Vlot AJ, Koppelman SJ, Meijers JC, Dama C, van den Berg HM, Bouma BN, Sixma JJ, Willems GM. Kinetics of factor VIII-von Willebrand factor association. Blood. 1996 1; vol. 87(5); pg. 1809-1816 Yee A, Gildersleeve RD, Gu S, Kretz CA, McGee BM, Carr KM, Pipe SW, Ginsburg D. A von Willebrand factor fragment containing the D'D3 domains is sufficient to stabilize coagulation factor VIII in mice. Blood. 2014 Jul 17; vol. 124(3); pg. 445-452. Innis et al, 1990 PCR: A Guide to Methods and Application, Academic Press, New York.

Claims

1. A fusion protein comprising a main protein and one or more extension peptides, wherein the amino acid sequence of the main protein is identical or similar to the amino acid sequence of a mammalian protein or a fragment thereof, and the extension peptides comprise a cluster of O-glycosylated amino acids.

2. The fusion protein of claim 1, wherein the fusion protein has an increased half-life compared to the main protein without the extension peptide.

3. The fusion protein according to claim 1 or 2, wherein the amino acid sequence of one or more extension peptides is identical or similar to a part of the non-repeated amino acid sequence of the main protein or fragment (non-repeated amino acid sequence section 9).

4. A fusion protein according to any one of claims 1 to 3, wherein one or more extension peptides are not derived from chorionic gonadotropin β-subunit (CG-β), in particular are not identical or similar to the C-terminal peptide (CTP) of CG-β.

5. A fusion protein according to any one of claims 1 to 4, wherein the cluster of O-glycosylated amino acids of the extension peptide contains at least two, preferably at least three, more preferably at least four O-glycosylated amino acids.

6. A fusion protein according to any one of claims 1 to 5, wherein the cluster of O-glycosylation sites comprises at least one threonine as an O-glycosylated amino acid, preferably said cluster comprises both threonine and serine as O-glycosylated amino acids.

7. A fusion protein according to any one of claims 1 to 6, wherein the one or more extension peptides contain at least one O-glycosylation site within 10 amino acids, preferably at least one O-glycosylation site within 8 amino acids.

8. The fusion protein according to any one of claims 1 to 7, wherein the one or more extension peptides have a length in the range of 20 to 60 amino acids, preferably 22 to 40 amino acids, more preferably 26 to 36 amino acids.

9. The fusion protein according to any one of claims 1 to 8, wherein one or more of the extension peptides have at least 90% sequence identity to an O-glycosylated peptide of von Willebrand factor (VWF).

10. The fusion protein according to claim 9, wherein the one or more extension peptides have at least 90%, preferably at least 95%, more preferably at least 98%, and most preferably at least 100% sequence identity to an O-glycosylated peptide of VWF, in particular to SEQ ID NO:

1.

11. A fusion protein according to any one of claims 1 to 10, comprising at least two copies, preferably at least four copies, of the extension peptide.

12. A fusion protein according to any one of claims 1 to 11, wherein the extension peptide is fused directly or indirectly to the C-terminus of the main protein.

13. A fusion protein according to any one of claims 1 to 12, wherein the extension peptide forms the C-terminus of the fusion protein, the C-terminal amino acid of which may optionally be linked to an affinity tag fusion peptide.

14. A fusion protein according to any one of claims 9 to 13, wherein the main protein comprises at least one cluster of O-glycosylated amino acids.

15. A fusion protein according to any one of claims 1 to 14, wherein the fusion protein comprises a dimerization domain, in particular wherein the main protein comprises a dimerization domain.

16. 16. The fusion protein according to any one of claims 1 to 15, wherein the mammalian protein is a human blood protein, preferably a coagulation factor or a protease inhibitor, more preferably selected from the group consisting of VWF, prothrombin, fibrinogen, FIII, FV, FVII and FVII, FVIII, FIX, FX, FXI, FXII, FXIII, ADAMTS13, antithrombin, alpha-1 antitrypsin, C1-inhibitor, antichymotrypsin, PAI-1, PAI-3, 2-macroglobulin, TFPI, heparin cofactor II protein Z, protein C and protein S.

17. The fusion protein according to any one of claims 1 to 16, wherein the main protein has at least 90%, preferably at least 95%, more preferably at least 98%, and most preferably 100% sequence identity to amino acids 764 to 1268 of SEQ ID NO:

2.

18. The fusion protein according to any one of claims 1 to 17, wherein the fusion protein comprises at least 4, preferably at least 8, more preferably at least 12 additional O-glycans compared to the main protein.

19. 19. The fusion protein according to any one of claims 1 to 18, wherein the amino acid sequence of the fusion protein has at least 90%, preferably at least 95%, more preferably at least 98%, and most preferably 100% identity to a sequence selected from SEQ ID NO:3, SEQ ID NO:4, SEQ ID NO:5, SEQ ID NO:6, SEQ ID NO:7, SEQ ID NO:8, SEQ ID NO:9, SEQ ID NO:10, or SEQ ID NO:

11.

20. 20. The fusion protein according to any one of claims 1 to 19, wherein the fusion protein is produced by expression in a mammalian cell line, preferably a human cell line, more preferably a human kidney cell line, most preferably a human embryonic kidney cell line, in particular a HEK293 cell line, such as HEK293F.

21. 21. A composition of a first protein and a second protein, wherein the first protein is a fusion protein according to any one of claims 1 to 20 and is capable of binding to the second protein, and the second protein is a therapeutic protein comprising an amino acid sequence identical or similar to the amino acid sequence of a second mammalian protein or a fragment thereof.

22. The composition of claim 21, wherein the half-life of a second protein bound to a first protein is increased compared to the free form of the second protein, preferably the half-life of a second protein bound to a first protein is increased compared to the second protein bound to a native mammalian protein or main protein without a fusion peptide.

23. 23. The composition of claim 21 or 22, wherein the molar ratio of the first protein to the second protein is in the range of 0.1 to 250, preferably in the range of 0.5 to 50, more preferably in the range of 1 to 25, and most preferably in the range of 2 to 10.

24. 24. The composition of any one of claims 21 to 23, wherein the binding affinity of the first protein to the second protein is in the range of 0.05 to 3 nM.

25. 25. The composition of any one of claims 21 to 24, wherein the protein of the second mammal is a blood protein, more preferably, said protein of the second mammal is a plasma protein, most preferably, said second protein is a coagulation factor.

26. 26. The composition of claim 25, wherein the second mammalian protein is a human protein.

27. the second protein is a FVIII protein; full length FVIII, a FVIII protein lacking at least a portion of the B domain; and A FVIII protein in which at least a portion of the B domain is replaced with an extension peptide, The extension peptide is as described in any one of claims 5 to 10.

26. A composition according to any one of claims 21 to 25.

28. 28. The composition of any one of claims 21 to 27, wherein the one or more extension peptides are positioned in a folded state of the first protein that does not interfere with binding of the first protein to the second protein.

29. A complex of a first protein and a second protein, The first protein is a fusion protein according to any one of claims 1 to 20, and The second protein has an amino acid sequence that is identical or similar to the amino acid sequence of a second mammalian protein or a fragment thereof.

30. 30. The conjugate of claim 29, wherein the first protein is non-covalently bound to the second protein.

31. 31. The complex of claim 29 or 30, wherein the two copies of the first protein comprise two copies of the first and second proteins that form a dimer, preferably a non-covalently linked dimer.

32. 30. The conjugate of claim 29, wherein the first protein is covalently linked to the second protein, and the linker is selected from a peptide bond, a chemical linker, or a glycosidic bond.

33. 21. A polynucleotide encoding a fusion protein according to any one of claims 1 to 20.

34. A polynucleotide encoding a fusion protein having an amino acid sequence having at least 90%, preferably at least 95%, more preferably at least 98%, and most preferably 100% identity to a sequence selected from SEQ ID NO:4, SEQ ID NO:5, SEQ ID NO:7, SEQ ID NO:8, SEQ ID NO:10, SEQ ID NO:11, and SEQ ID NO:

14.

35. 35. A vector comprising a polynucleotide according to claim 33 or 34, wherein the vector backbone is preferably selected from pCDNA3, pCDNA3.1, pCDNA4, pCDNA5, pCDNA6, pCEP4, pCEP-puro, pCET1019, pCMV, pEF1, pEF4, pEF5, pEF6, pExchange, pEXPR, pIRES and pSCAS.

36. A host cell comprising a polynucleotide according to claim 33 or 34 or a vector according to claim 35, The host cell is preferably a mammalian cell, preferably a human cell, more preferably a human kidney cell, most preferably a human embryonic kidney cell line, in particular a HEK293 cell line such as HEK293F.

37. 21. Use of a fusion protein according to any one of claims 1 to 20, wherein the fusion protein is capable of binding to a second protein, for increasing the half-life of the second protein.

38. A fusion protein according to any one of claims 1 to 20, A pharmaceutical composition comprising a composition according to any one of claims 21 to 28 or a conjugate according to any one of claims 29 to 32, preferably for use in the treatment or prevention of bleeding disorders selected from the treatment of PUP and ITI and / or the treatment of associated bleeding disorders.

39. 36. A pharmaceutical composition for use according to claim 35, wherein the use comprises intravenous or non-intravenous injection, preferably subcutaneous injection.

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