A polycyclic compound

Abstract

The present invention discloses a class of BRM ATPase inhibitor compounds as shown in formula (I), uses thereof and pharmaceutical compositions containing the same. The compounds have a strong inhibitory effect on BRM ATPase and have good application prospects in BRG1 gene mutation tumors.

Description

Technical Field

[0001] The present invention relates to a polycyclic compound, application thereof and a pharmaceutical composition containing the same. Background Art

[0002] Cancer is one of the leading causes of death worldwide and is mainly caused by genetic and epigenetic changes. These changes affect the gene expression or signaling pathways of normal cells, leading to the transformation of normal cells into malignant tumor cells. Cancer genome sequencing results of tumor samples found that subunit genes of the human ATP-dependent chromatin remodeling complex SWI / SNF are mutated in >20% of human tumors, and most of them are loss-of-function mutations.

[0003] BRM (Protein brahma homolog) is the ATPase subunit of the SWI / SNF complex and is mutually exclusive with BRG1 (Protein brahma homolog 1), which is also an ATPase subunit. ATPase hydrolyzes ATP to provide energy for the SWI / SNF complex, enabling it to regulate gene expression and key cellular processes, and plays an important role in maintaining cell vitality.

[0004] The BRG1 gene (SMARCA4) is highly mutated in many types of cancer, including but not limited to melanoma, endometrial cancer, non-small cell lung cancer, esophageal and gastric adenocarcinoma, urothelial bladder cancer, and colorectal cancer. In contrast, the BRM gene (SMARCA2) rarely mutates. BRM and BRG1 are complementary and redundant in their functions related to cell viability, such as participating in the regulation of cell cycle and hormone action pathways, DNA damage repair response, etc. Therefore, in tumor cells with BRG1 gene defects, BRM can compensate for the functional loss of BRG1 and maintain the function of the SWI / SNF complex to support cell viability.

[0005] The synthetic lethality of BRM and BRG1 has been verified in in vitro and in vivo disease models of various types of tumor cells: degradation of BRM or silencing of BRM gene expression in BRG1 gene-deficient cells will inhibit tumor cell proliferation in vitro and tumor growth in vivo; BRG1 gene-deficient tumor cells are extremely sensitive to shRNA of the BRM gene; inhibiting the ATPase activity of BRM can inhibit the in vivo growth of BRG1 gene-deficient tumors... Therefore, in BRG1 gene mutant tumors, BRM is a potential drug treatment target.

[0006] Compared with BRG1, drug interference with BRM has a lower risk of toxicity. The ATPase activity and chromatin remodeling ability of the BRM-SWI / SNF complex are much lower than those of the BRG1-SWI / SNF complex. In normal cells, the SWI / SNF complex mainly relies on BRG1 to function. Homozygous knockout of the BRG1 gene does not cause embryonic lethality in mice or affect the reproductive capacity of adult mice, which is the opposite of the performance of homozygous knockout of the BRM gene.

[0007] Therefore, targeted inhibition of BRM ATPase activity has the potential to become a new treatment option for tumors with BRG1 gene mutations.

[0008] Currently, no BRM ATPase inhibitor drugs have entered the clinical stage, but some BRM ATPase inhibitors are in preclinical development. Foghorn’s recently disclosed patent WO2022103899 discloses a number of highly selective BRM ATPase inhibitors, the structural examples of which are as follows:

[0009] Summary of the invention

[0010] The present invention provides a compound represented by the following formula (I) or a pharmaceutically acceptable salt thereof:

[0011]

[0012] wherein M and Q are independently -O- or -CH2-, and M and Q are not simultaneously -O-;

[0013] R1 is a 5-6 membered heterocyclic group, wherein R1 is optionally replaced by C 1-3 Alkyl substitution;

[0014] Preferably, R1 is a morpholine ring;

[0015] More preferably, R1 is Indicates a connection;

[0016] More preferably, R1 is substituted by methyl.

[0017] The compound or pharmaceutically acceptable salt thereof described in the present invention may be any of the following compounds:

[0018]

[0019] The present invention also provides the use of the compound shown above or a pharmaceutically acceptable salt thereof in the preparation of a BRM ATPase inhibitor, including the use in treating melanoma, endometrial cancer, non-small cell lung cancer, esophageal gastric adenocarcinoma, urothelial bladder cancer or colorectal cancer.

[0020] The present invention also provides a pharmaceutical composition, which comprises the compound shown above or a pharmaceutically acceptable salt thereof, and a pharmaceutically acceptable carrier.

[0021] As used herein, the term "pharmaceutically acceptable salt" refers to a pharmaceutically acceptable organic or inorganic salt of a compound of the present invention. DETAILED DESCRIPTION

[0022] The present invention is further described below by way of examples, but the present invention is not limited to the scope of the examples. The experimental methods in the following examples without specifying specific conditions are carried out according to conventional methods and conditions, or selected according to the product specifications.

[0023] Example 1 EVO33529

[0024]

[0025] Step 1:

[0026] At room temperature, 6-bromo-4-isochromone (400 mg, 1.76 mmol), Pd(OAc)2 (39.55 mg, 176.17 μmol), DCCP.HF4 (215.01 mg, 352.34 μmol), potassium carbonate (486.95 mg, 3.52 mmol), DMSO (6 mL) and water (2 mL) were added to the bottle, and the reaction system was replaced with CO (*3), and the reaction was stirred in an oil bath at 100°C overnight. The reaction was monitored by LCMS. After filtering the system with diatomaceous earth, it was concentrated to obtain a black oil EVO33529-A1 (260 mg, yield: 76.80%), which was directly used for the next step. LCMS (ESI) m / z = 191.06 [MH]-.

[0027] Step 2:

[0028] At room temperature, EVO33529-A1 (260 mg, 1.35 mmol), iodomethane (384.08 mg, 2.71 mmol), potassium carbonate (560.97 mg, 4.06 mmol) and DMSO (10 mL) were added to the bottle and stirred for 4 hours. New spots were generated on the TLC plate, and the raw materials reacted completely. Water (20 mL) was added, and the mixture was extracted with ethyl acetate (20 mL*3). The combined organic phase was washed with water (20 mL*2) and saturated brine (20 mL*1) in turn, dried over anhydrous sodium sulfate, and filtered. The filtrate was concentrated under reduced pressure and purified by silica gel chromatography (PE: EtOAc = 10:1) to obtain a white solid product EVO33529-A2 (230 mg, yield: 82.44%).

[0029] Step 3:

[0030] Under ice bath, add EVO33529-A2 (100 mg, 484.98 μmol), ethanedithiol (68.53 mg, 727.47 μmol), BF3.Et2O (13.8 mg, 97.0 μmol) and anhydrous dichloromethane (10 mL) into the bottle, continue stirring for 30 minutes, then move to room temperature and continue stirring for 4 hours. TLC monitors the formation of new spots. Add saturated sodium bicarbonate aqueous solution to quench the reaction, extract with ethyl acetate (20 mL*3), wash the combined organic phase with water (20 mL*2), saturated brine (20 mL*1), dry with anhydrous sodium sulfate, filter, concentrate the filtrate under reduced pressure, and purify by silica gel column chromatography (PE:EtOAc=10:1) to obtain white solid EVO33529-A3 (60 mg, yield: 43.81%).

[0031] Step 4:

[0032] At room temperature, EVO33529-A3 (60 mg, 212.48 μmol), LiOH (20.35 mg, 849.92 μmol), tetrahydrofuran (4 mL) and water (4 mL) were added into the bottle and stirred for 2 hours. When the reaction was completed as monitored by LCMS, the system was directly freeze-dried to obtain a white solid crude product EVO33529-A4 (60 mg, crude).

[0033] Step 5:

[0034] At room temperature, EVO33529-A4 (30 mg, 77.74 μmol), intermediate 1-A1 (31.3 mg, 116 μmol) and anhydrous dichloromethane (5 mL) were placed in a reaction bottle, and HATU (59.1 mg, 155 μmol) and DIPEA (30.14 mg, 233 μmol, 40.62 μL) were added respectively, and stirred for 16 hours. LCMS showed that the product was generated. Water (2 mL) was added, and DCM (2 mL*3) was extracted. The combined organic phase was washed with water (2 mL*2) and saturated brine (2 mL*1) in turn, dried over anhydrous sodium sulfate, filtered, and the filtrate was concentrated under reduced pressure to obtain a yellow oil (15 mg). The product EVO33529 (2.1 mg, yield: 3%) was obtained by separation by HPLC preparative column and freeze-drying. LCMS (ESI) m / z = 600.3 [M+H] + , HPLC: 95.66%, 1H NMR (400MHz, DMSO-d6) δ9.39 (s, 1H), 9.33 (t, J = 6.0Hz, 1H), 8.68-8.61 (m, 2H), 8.43 (d, J = 2.0 Hz,1H),7.91(d,J=7.6Hz,1H),7.84(dd,J=8.0,1.6Hz,1H),7.78-7.72(m,2H),7.16(d,J=8.0H z,1H),7.03(d,J=8.4Hz,1H),4.84(s,2H),4.79(d,J=5.6Hz,2H),4.31(dd,J=14.4,2.4Hz,2H) ,4.00(s,2H),3.66-3.61(m,4H),3.46-3.31(m,2H),2.53-2.47(m,2H),1.21(d,J=6.4Hz,6H).

[0035] Example 2 EVO33516

[0036]

[0037] The reference compound EVO33529 was separated by HPLC preparative column and then freeze-dried to obtain a yellow solid EVO33516 (8.7 mg, yield: 10.83%), LCMS (ESI) m / z = 600.3 [M+H] + , purity: 96.25%. 1 H NMR (400MHz, DMSO-d6) δ9.38 (s, 1H), 9.19 (t, J = 6Hz, 1H), 8.64 (dd, J = 8.8, 19.2Hz, 2H ),8.44(d,J=2Hz,1H),7.91(d,J=7.2Hz,1H),7.81(dd,J=8.8,2.4Hz,1H),7.77-7.70( m,2H),7.03(d,J=8.4Hz,1H),6.85(d,J=8.8Hz,1H),4.76(d,J=5.6Hz,2H),4.38-4.28 (m,4H),3.72-3.63(m,4H),3.58-3.49(m,2H),2.54-2.47(m,4H),1.21(d,J=6Hz,6H).

[0038] Example 3 EVO33533

[0039]

[0040] Referring to Example EVO33529, the product was separated by HPLC preparative column and freeze-dried to obtain yellow solid EVO33533 (39.3 mg, yield: 18.4%), LCMS (ESI) m / z=598.33 [M+H] + , purity: 99.07%. 1 H NMR (400MHz, DMSO-d6) δ9.39 (s, 1H), 9.24 (t, J = 6.0Hz, 1H), 8.68-8.59 (m, 2H), 8.46 (d, J = 1.6Hz ,1H),7.91(d,J=7.6Hz,1H),7.79-7.71(m,3H),7.16(d,J=8.0Hz,1H),7.02(d,J=8.4Hz,1H),4. 78(d,J=6.0Hz,2H),4.31(dd,J=13.2,2.4Hz,2H),3.72-3.61(m,4H),3.53-3.45(m,2H),2.83(t ,J=6.4Hz,2H),2.53-2.47(m,2H),2.38-2.32(m,2H),1.96-1.89(m,2H),1.21(d,J=6.4Hz,6H).

[0041] Effect Example 1 Inhibitory Activity Detection Experiment of Compounds on BRM and BRG1 ATPase

[0042] To characterize the ATPase inhibitory activity of compounds against BRM and BRG1, ADP-Glo TM Kinase Assay (Promega, #V9101) detects the amount of ADP in the ATPase reaction endpoint system to evaluate ATPase activity in two steps: First, after the ATPase reaction, ADP-Glo ​​Reagent is added to terminate the reaction and deplete the remaining ATP; then, Kinase Detection Reagent is added to convert ADP into ATP, and ATP is consumed through the luciferase / luciferin reaction to produce a chemiluminescent signal, which is proportional to the concentration of ATP (converted from ADP generated by the ATPase reaction). Compared with the control wells without compound treatment, the ATPase inhibitory activity of the compound is evaluated by the reduction of the luminescent signal. The IC is calculated based on the data relationship between the compound concentration and the percentage of ATPase activity. 50 value.

[0043] The specific operation is as follows: the test compound (dissolved in DMSO, concentration 10uM-1nM, 50nL / well) is added to a 384-well plate (Greiner#781280). 2.5μL of a mixed solution of BRM truncations (expressed and purified BRM ATPase-SnACDomain, refer to the literature description DOI:10.1021 / acs.jmedchem.8b01318) or BRG1 truncations (expressed and purified BRG1ATPase-SnAC Domain, refer to the literature description DOI:10.1021 / acs.jmedchem.8b01318) and DNA (Invitrogen#15632011) is added to each well (protein final concentration 30nM, DNA final concentration 80nM). 2.5μL of ATP (Promega#V9101, final concentration 400uM) is added to each well to start the enzyme reaction. The system buffer is 20mM Tris, pH 8.0, 50mM NaCl, 20mM MgCl2, 0.1% Tween-20, 1mM DTT, the total volume is 5μL, and the reaction is carried out at 25°C for 60 minutes. Then, ADP Glo reagent (5μL) is added and incubated at 25°C for 90 minutes. Then, Kinase Detection Reagent (10μL) is added and incubated at 25°C for 60 minutes. Finally, chemiluminescence is detected.

[0044] The results of enzyme activity determination are listed in the following table:

[0045]

[0046] Where A represents IC 50 ≤100nM; B means 100nM<IC 50 ≤500nM; C means 500nM<IC 50 ≤1000nM; D means 1000nM<IC 50 ≤5000nM; E means 5000nM<IC 50 ≤10000nM; F represents IC 50 >10000nM; NA means not detected.

Claims

1. A compound represented by the following formula (I) or a pharmaceutically acceptable salt thereof: in, M and Q are each independently -O- or -CH2-, and M and Q are not simultaneously -O-; R1 is Represents a connection point, wherein R1 is optionally C 1-3 Alkyl substitution.

2. The compound or pharmaceutically acceptable salt thereof according to claim 1, wherein R1 is substituted with a methyl group.

3. The compound according to claim 1 or a pharmaceutically acceptable salt thereof, which is any of the following compounds:

4. A pharmaceutical composition, characterized in that It comprises the compound according to any one of claims 1 to 3 or a pharmaceutically acceptable salt thereof, and a pharmaceutically acceptable carrier.

5. Use of the compound according to any one of claims 1 to 3 or a pharmaceutically acceptable salt thereof in the preparation of a BRMATPase inhibitor.

6. Use of a compound according to any one of claims 1 to 3 or a pharmaceutically acceptable salt thereof in the preparation of a medicament for treating melanoma, endometrial cancer, non-small cell lung cancer, esophageal and gastric adenocarcinoma, urothelial bladder cancer or colorectal cancer.

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