Anti-il-31ra antibodies and uses thereof
Patent Information
- Application Number
- AU2025222733
- Authority / Receiving Office
- AU · AU
- Patent Type
- Applications
- Current Assignee / Owner
- Priority Date
- 2024-02-13
- Filing Date
- 2025-02-13
- Publication Date
- 2026-08-27
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Abstract
Description
INCORPORATION BY REFERENCE
[0001] This application claims priority to US provisional application Serial No. 63 / 552,803, filed February 13, 2024, which is incorporated by reference herein in its entirety.
[0002] The foregoing applications, and all documents cited therein or during their prosecution (“appln cited documents”) and all documents cited or referenced in the appln cited documents, and all documents cited or referenced herein (“herein cited documents”), and all documents cited or referenced in herein cited documents, together with any manufacturer’s instructions, descriptions, product specifications, and product sheets for any products mentioned herein or in any document incorporated by reference herein, are hereby incorporated herein by reference, and may be employed in the practice of the invention. More specifically, all referenced documents are incorporated by reference to the same extent as if each individual document was specifically and individually indicated to be incorporated by reference. SEQUENCE LISTING
[0003] The instant application contains a Sequence Listing which has been submitted herewith and is hereby incorporated by reference in its entirety. Said .xml copy, created on February 13, 2025 is named Y9432-99006, and is 153,444 bytes in size. FIELD OF THE INVENTION
[0004] The invention provides novel anti-IL-3 IRA proteins and antibodies that are suitable for administration to a human or canine subject. The invention also provides novel compositions and methods of treating atopic dermatitis, dermatomyositis, pruritic skin disorders, allergic asthma, and inflammatory bowel diseases, primary localized cutaneous amyloidosis type 2, or eliciting an antiallergenic effect in a human or canine subject, comprising administering an effective amount of an anti-IL-3 IRA protein, antibody, or fragment thereof. The methods and compositions are used to treat or prevent IL-31-, IL-31-R-, and IL-3 IRA-related disorders. BACKGROUND OF THE INVENTION
[0005] Interleukin 31 (IL-31) is an inflammatory cytokine that helps trigger cell-mediated immunity against pathogens. Multiple cell types express IL-31 including activated Th2 cells, CD8+ T cells, skin-homing memory T cells, monocytes, macrophages, monocyte-derived dendritic cells, mast cells, keratinocytes, and dermal fibroblasts.
[0006] IL-3 lisa member of the Interleukin 6 (IL-6) cytokine family, which also includes IL-6, IL-11, IL27 p28 / IL-30, Leukemia inhibitory factor (LIF), Oncostatin M (OSM), Cardiotrophin-like cytokine (CLC), Ciliary neurotrophic factor (CNTF), Cardiotrophin-1 (CT-1), and Neuropoeitin. While IL-31 shares the four helical structure of the IL-6 family, IL-31 does not signal through the type I cytokine receptor gpl30 receptor, which is shared between the IL-6, IL-11, IL-12, IL27, LIF, and OSM receptors. Instead, IL-31 signals through the IL-31 receptor (IL-31R), which is a heterodimeric receptor complex containing IL-31 Receptor Alpha (IL-3 IRA) and oncostatin M receptor (OSMR) beta chain. Although the OSMR beta chain is a subunit of the OSMR and IL-31R complexes, each has distinct biological function. IL-31 is involved in many Th2-driven diseases while OSM is involved in hematopoiesis and cancer development. IL-31R is expressed on macrophages, dendritic cells, eosinophils, basophils, keratinocytes, and peripheral nerves.
[0007] High levels of IL-31 are associated with conditions including pruritic skin disorders, allergic asthma, and inflammatory bowel diseases. IL-31 has also been shown to have chemokine-inducing activity by targeting immune cells such as mast cells, eosinophils, basophils, and monocytes / dendritic cells to induce inflammation. IL-31 has also been suggested to be involved in regulating the homeostasis of hematopoietic progenitor cells, and in the proliferation and differentiation of non-hematopoietic cells. IL-31 stimulates neuronal growth and sensory nerve branching. Within the skin, IL-31 impairs keratinocyte differentiation and barrier function, and in turn activates keratinocytes to produce cytokines, chemokines, and pruritus mediators amplifying skin inflammation and itch. IL-31 also interacts with dermal fibroblasts initiating tissue remodeling through the induction of collagen production and cytokine and chemokine expression.
[0008] In IL-31R-expressing sensory neurons, IL-31 induces the activation of ion channels (TRPV1, TRPA1) and transmits pruritus signals via brain natriuretic peptide to the central nervous system.
[0009] IL-3 IRA is expressed by multiple leukocyte subsets, and epithelial and stromal cells both in steady state and under activated conditions. For example, keratinoctyes, fibroblasts, and a distinct subset of dorsal root ganglia (DRG) neurons express and signal via IL-3 IRA. In macrophages, IL-4 and IL-13 upregulate the expression of IL-3 IRA.
[0010] IL-3 IRA has been found to cause primary localized cutaneous amyloidosis type 2 and implicated in pruritic skin disorders and allergic skin diseases such as atopic dermatitis. IL-31RA- related diseases and conditions that affect dogs, cats, and horses are similar to those in humans, including without limitation, atopic dermatitis, atopic eczema, lesional dermatomyositis, and other pruritic allergic skin diseases, and insect bite hypersensitivity.
[0011] Targeting IL-31 with nemolizumab appears efficacious in atopic dermatitis and prurigo nodularis. Similarly, targeting IL-31 with lokivetamab appears efficacious for the treatment of canine atopic dermatitis.
[0012] Citation or identification of any document in this application is not an admission that such document is available as prior art to the present invention. SUMMARY OF THE INVENTION
[0013] In an aspect, the invention provides an antigen binding protein that specifically binds to interleukin-31 receptor alpha (IL-3 IRA). In certain embodiments, the IL-3 IRA binding protein comprises: (a) a heavy chain complementarity determining region 1 (HCDR1) comprising X26X27X28X29X30X31X32X33 (SEQ ID NO:53), wherein X26 comprises A, G, I, L, M, W, F, P, or V, X27 comprises A, G, I, L, M, W, F, P, V, or Y, X28 comprises C, S, T, Y, N, or Q, X29 comprises A, G, I, L, M, W, F, P, V, or Y, X30 comprises D or E, X31 comprises D or E, X32 comprises C, S, T, Y, N, or Q, and X33 comprises A, G, I, L, M, W, F, P, or V; (b) a heavy chain complementarity determining region 2 (HCDR2) comprising X51X52X53X54X55X56X57 (SEQ ID NO:54), wherein X51 comprises A, G, I, L, M, W, F, P, or V, X52 comprises C, S, T, Y, N, or Q, X53 comprises A, I, L, M, F, P, W, Y, or V, X54 comprises A, G, I, L, M, W, F, P, or V, X55 comprises A, G, I, L, M, W, F, P, or V, X56 comprises A, G, I, L, M, W, F, P, or V, and X57 comprises C, S, T, Y, N, or Q; (c) a heavy chain complementarity determining region 3 (HCDR3) comprising X97X98X99X100X101X102X103X104X105X106X107X108X109X110X111X112X113X114X115X116 X117X118X119 (SEQ ID NO:55), wherein X97 comprises A, G, I, L, M, W, F, P, or V, X98 comprises H, K, or R, X99 comprises E or D, X100 comprises C, S, T, Y, N, or Q, X101 comprises A, G, I, L, M, W, F, P, or V, X102 comprises A, G, I, L, M, W, F, P, or V, X103 comprises H, K, or R, X104 comprises A, G, I, L, M, W, F, P, or V, X105 comprises A, G, I, L, M, W, F, P, or V, X106 comprises E or D, X107 comprises A, G, I, L, M, W, F, P, or V, Xios comprises A, G, I, L, M, W, F, P, or V, X109 comprises A, G, I, L, M, W, F, P, or V, Xno comprises E or D, Xm comprises C, S, T, Y, N, or Q, X112 comprises A, G, I, L, M, W, F, P, V, or Y, X113 comprises an C, S, T, Y, N, or Q, X114 comprises C, S, T, Y, N, or Q, X115 comprises C, S, T, Y, N, or Q, Xn6 comprises C, S, T, Y, N, or Q, X117 comprises C, S, T, Y, N, or Q, Xus comprises A, G, I, L, M, W, F, P, or V, and X119 comprises E or D; (d) a light chain complementarity determining region 1 (LCDR1) comprising X27X28X29X30X31X32X33 (SEQ ID NO:56), wherein X27 comprises C, S, T, Y, N, or Q, X28 comprises C, S, T, Y, N, or Q, X29 comprises A, G, I, L, M, W, F, P, or V, X30 comprises C, S, T, Y, N, or Q, X31 comprises C, S, T, Y, N, or Q, X32 comprises H, K, or R, and X33 comprises C, S, T, Y, N, or Q; (e) a light chain complementarity determining region 2 (LCDR2) comprising X51X52X53, wherein X51 comprises A, G, I, L, M, W, F, P, or V, X52 comprises C, S, T, Y, N, or Q, and X53 comprises C, S, T, Y, N, or Q; and (f) a light chain complementarity determining region 3 (LCDR3) comprising X90X91X92X93X94X95X96X97X98 (SEQ ID NO:57), wherein X90 comprises C, S, T, Y, N, or Q, X91 comprises C, S, T, Y, N, or Q, X92 comprises C, S, T, Y, N, or Q, X93 comprises E or D, X94 comprises C, S, T, Y, N, or Q, X95 comprises C, L, S, T, Y, N, or Q, X96 comprises A, G, I, L, M, W, F, P, or V, X97 comprises H, K, or, R, and X98 comprises C, S, T, Y, N, or Q.
[0014] In certain embodiments, (a) HCDR1 comprises GFTFDDYG (SEQ ID NO:29) or differs at no more than one or two positions; and / or (b) HCDR2 compri sesINXssAGGT (SEQ ID NO:58), wherein X53 comprises F, W, or Y; and / or (c) HCDR3 comprises ARESPLRLGDLGGDYFYYYYYXiisD (SEQ ID NO:59), wherein Xus comprises I, L, or M; and / or (d) LCDR1 comprises QSVSSRY (SEQ ID NO:32) or differs at no more than one or two positions; and / or (e) LCDR2 comprises GTS or differs at no more than one or two positions; and / or (f) LCDR3 comprises QQYDX94X95PRT (SEQ ID NO:60), wherein X94 comprises N, or Q, and X95 comprises S or L.
[0015] In certain embodiments, the heavy chain variable domain comprises W53F, W53Y, Ml 181, or Ml 18L and / or the light chain variable domain comprises N94Q or S95L.
[0016] In certain embodiments, the heavy chain variable domain comprises an HCDR2 sequence, an HCDR3 sequence, and an LCDR3 sequence of Table 6.
[0017] In certain embodiments, the heavy chain variable domain comprises the IMGT CDRs ofSEQIDNO:!, SEQ ID NO: 10, SEQ ID NO: 14, SEQ ID NO: 15, SEQ ID NO: 16, or SEQ ID NO: 17, and wherein the light chain variable domain comprises the CDRs of SEQ ID NO:2, SEQ ID NO: 11, SEQ ID NO: 19, or SEQIDNO:20.
[0018] In certain embodiments, antigen binding protein that specifically binds to IL-3 IRA comprises: (a) a heavy chain complementarity determining region 1 (HCDR1) comprising X26X27X28X29X30X31X32X33 (SEQ ID NO:61), wherein X26 comprises A, G, I, L, M, W, F, P, or V, X27 comprises A, G, I, L, M, W, F, P, V, or Y, X28 comprises C, S, T, Y, N, or Q, X29 comprises A, G, I, L, M, W, F, P, V, of Y, X30 comprises C, S, T, Y, N, or Q, X31 comprises C, S, T, Y, N, or Q, X32 comprises C, S, T, Y, N, or Q, and X33 comprises A, G, I, L, M, W, F, P, or V; (b) a heavy chain complementarity determining region 2 (HCDR2) comprising X51X52X53X54X55X56X57 (SEQ ID NO:62), wherein X51 comprises A, G, I, L, M, W, F, P, or V, X52 comprises C, S, T, Y, N, or Q, X53 comprises A, G, I, L, M, W, F, P, or V, X54 comprises C, S, T, Y, N, or Q, X55 comprises A, G, I, L, M, W, F, P, or V, X56 comprises C, S, T, Y, N, or Q, and X57 comprises A, C, S, T, Y, N, or Q; (c) a heavy chain complementarity determining region 3 (HCDR3) comprising X97X98X99X100X101X102X103X104X105X106X107 (SEQ ID NO 63), wherein X97 comprises A, G, I, L, M, W, F, P, or V, X98 comprises C, S, T, Y, N, or Q, X99 comprises C, S, T, Y, N, or Q, X100 comprises A, G, I, L, M, W, F, P, or V, X101 comprises A, G, I, L, M, W, F, P, or V, X102 comprises C, S, T, Y, N, or Q, X103 comprises C, S, T, Y, N, or Q, Xi04 comprises A, G, I, L, M, W, F, P, V, or Y, X105 comprises H, K, or R, X106 comprises A, G, I, L, M, W, F, P, or V, and X107 comprises E or D; (d) a light chain complementarity determining region 1 (LCDR1) comprising X27X28X29X30X31X32 (SEQ ID NO:64) wherein X27 comprises C, S, T, Y, N, or Q, X28 comprises C, S, T, Y, N, or Q, X29 comprises A, G, I, L, M, V, W, F, P, or V, X30 comprises C, S, T, Y, N, or Q, X31 comprises C, S, T, Y, N, or Q, and X32 comprises C, S, T, Y, N, or Q; (e) a light chain complementarity determining region 2 (LCDR2) comprising X50X51X52, wherein X50 comprises A, G, I, L, M, W, F, P, or V, X51 comprises A, G, I, L, M, W, F, P, or V, and X52 comprises C, S, T, Y, N, or Q; and (f) a light chain complementarity determining region 3 (LCDR3) comprising X89X9oX9iX92X93X94X95X96X97X98 (SEQ ID NO:65), wherein Xs9 comprises C, S, T, Y, N, or Q, X90 comprises C, S, T, Y, N, or Q, X91 comprises A, G, I, L, M, W, F, P, V, or Y, X92 comprises A, G, I, L, M, W, F, P, V, or Y, X93 comprises C, S, T, Y, N, or Q, X94 comprises A, I, L, M, F, P, W, Y, or V, X95 comprises A, G, I, L, M, W, F, P, or V, X96 comprises A, G, I, L, M, W, F, P, or V, X97 comprises A, G, I, L, M, W, F, P, V, or Y, and X98 comprises C, S, T, Y, N, or Q.
[0019] In certain embodiments, (a) HCDR1 comprises GFTFSSYA (SEQ ID NO:34); and / or (b) HCDR2 comprise ISGSGX56X57T (SEQ ID NO:66), wherein X56 comprises N, or Q; and X57 comprises A or S; and / or (c) HCDR3 comprises ATQVVYYFKXioeDV (SEQ ID NO:67), wherein X106 comprises I, L, or M; and / or (d) LCDR1 comprises QSVSSN (SEQ ID NO:37); and / or (e) LCDR2 comprises GAS; and / or (f) LCDR3 comprises QQYYNX94PPFT (SEQ ID NO:68), wherein X94 comprises F, Y, or W.
[0020] In certain embodiments, the heavy chain variable domain comprises N56Q, S57A, M106I, or Ml 106L and / or the light chain variable domain comprises W94F or W94Y.
[0021] In certain embodiments, the heavy chain variable domain comprises an HCDR2 sequence, an HCDR3 sequence, and an LCDR3 sequence of Table 7.
[0022] In certain embodiments, the heavy chain variable domain comprises the IMGT CDRs of SEQ ID NO:3, SEQ ID NO: 12, SEQ ID NO:21, SEQ ID NO:22, SEQ ID NO:23, SEQ ID NO:24, or SEQ IDNO:25, and wherein the light chain variable domain comprises the CDRs of SEQ ID NO:4, SEQ ID NO: 13, SEQ ID NO:26, or SEQ ID NO:27.
[0023] In certain embodiments, the antigen binding protein comprises a heavy chain variable domain at least 80%, at least 85%, at least 90%, at least 95%, at least 97%, at least 98%, at least 99%, or 100% identical to a heavy chain variable domain of SEQ ID NO:3, SEQ ID NO: 12, SEQ ID NO:21, SEQ ID NO:22, SEQ ID NO:23, SEQ ID NO:24, or SEQ IDNO:25, and a light chain variable domain at least 80%, at least 85%, at least 90%, at least 95%, at least 97%, at least 98%, at least 99%, or 100% identical to a light chain variable domain of SEQ ID NO:4, SEQ ID NO: 13, SEQ ID NO:26, or SEQ ID NO:27.
[0024] In an aspect, the invention provides an isolated nucleic acid sequence encoding any one of the aforementioned anti-IL-3 IRA antibodies or antibody fragments, and a vector comprising or capable of expressing any one of the anti-IL-3 IRA antibodies or antibody fragments.
[0025] In another aspect, the invention provides a recombinant cell which comprises a nucleic acid sequence encoding any one of the aforementioned anti-IL-3 IRA antibodies or antibody fragments, or a vector comprising or capable of expressing any one of the anti-IL-3 IRA antibodies or antibody fragments.
[0026] The invention provides a method of producing any one of the aforementioned anti-IL-3 IRA antibodies or antibody fragments, which comprises culturing the cell capable of expessing the anti-IL-3 IRA antibody or antibody fragment under conditions that result in production of the antibody or antibody fragment.
[0027] The invention provides a pharmaceutical composition comprising a therapeutically effective amount of any one of the aforementioned anti-IL-3 IRA antibodies or antibody fragments.
[0028] In an aspect, the invention provides a method of inhibiting binding of IL-31 to IL-3 IRA in a subject, which comprises administering to the subject a therapeutically effective amount of any one of the aforementioned anti-IL-3 IRA antibodies or antibody fragments.
[0029] In an aspect, the invention provides a method of suppressing atopic dermatitis in a subject, which comprises administering to the subject a therapeutically effective amount of any one of the aforementioned anti-IL-3 IRA antibodies or antibody fragments.
[0030] In certain non-limiting embodiments, the subject is a human, a canine, a feline or an equine.
[0031] In an aspect, the invention provides a method of blocking binding of IL-31 to IL-3 IRA in a sample comprising incubating the sample with any one of the aforementioned anti-IL-3 IRA antibodies or antibody fragments and detecting whether IL-31 binds to IL-3 IRA.
[0032] Accordingly, it is an object of the invention not to encompass within the invention any previously known product, process of making the product, or method of using the product such that Applicants reserve the right and hereby disclose a disclaimer of any previously known product, process, or method. It is further noted that the invention does not intend to encompass within the scope of the invention any product, process, or making of the product or method of using the product, which does not meet the written description and enablement requirements of the USPTO (35 U.S.C. §112, first paragraph) or the EPO (Article 83 of the EPC), such that Applicants reserve the right and hereby disclose a disclaimer of any previously described product, process of making the product, or method of using the product. It may be advantageous in the practice of the invention to be in compliance with Art. 53(c) EPC and Rule 28(b) and (c) EPC. All rights to explicitly disclaim any embodiments that are the subject of any granted patent(s) of applicant in the lineage of this application or in any other lineage or in any prior filed application of any third party is explicitly reserved. Nothing herein is to be construed as a promise.
[0033] It is noted that in this disclosure and particularly in the claims and / or paragraphs, terms such as "comprises", "comprised", "comprising" and the like can have the meaning attributed to it in U.S. Patent law; e.g., they can mean "includes", "included", "including", and the like; and that terms such as "consisting essentially of' and "consists essentially of' have the meaning ascribed to them in U.S. Patent law, e.g., they allow for elements not explicitly recited, but exclude elements that are found in the prior art or that affect a basic or novel characteristic of the invention.
[0034] These and other embodiments are disclosed or are obvious from and encompassed by the following Detailed Description. BRIEF DESCRIPTION OF THE DRAWINGS
[0035] The following detailed description, given by way of example, but not intended to limit the invention solely to the specific embodiments described, may best be understood in conjunction with the accompanying drawings.
[0036] FIG. 1 depicts the human antibody inhibition of IL-31-induced STAT3 phosphorylation in DH82 cells.
[0037] FIG. 2 depicts the caninized 109 antibody inhibition of IL-31-induced STAT3 phosphorylation in DH82 cells.
[0038] FIG. 3 depicts the caninized 186 antibody inhibition of IL-31-induced STAT3 phosphorylation in DH82 cells.
[0039] FIG. 4 depicts the inhibition of IL-31-induced STAT3 phosphorylation in DH82 cells by optimized, caninized antibodies.
[0040] FIG. 5 (SEQ ID Nos:l, 10,14,15,16,17,18,29,82-97) depicts a sequence alignment of heavy chain variable domains of the caninized 109 antibody.
[0041] FIG. 6 (SEQ ID Nos:2,l 1,19,20,32-33,43,44,98-104) depicts a sequence alignment of light chain variable domains of the caninized 109 antibody.
[0042] FIG. 7 (SEQ ID Nos:3,12,21,22,23,24,25,34-36,45-48,83,96-97,105-109) depicts a sequence alignment of heavy chain variable domains of the caninized 186 antibody.
[0043] FIG. 8 (SEQ ID Nos:4,13,26,27,37-38,49-50,110-117) depicts a sequence alignment of light chain variable domains of the caninized 186 antibody. DETAILED DESCRIPTION OF THE INVENTION
[0044] According to certain exemplary embodiments of the present invention, the IL-3 IRA binding protein is an anti-IL-3 IRA antibody or antigen-binding fragment thereof. The term "antibody," as used herein, includes immunoglobulin molecules comprising four polypeptide chains, two heavy (H) chains and two light (L) chains inter-connected by disulfide bonds, as well as multimers thereof (e.g., IgM). In a typical antibody, each heavy chain comprises a heavy chain variable region (abbreviated herein as HCVR or VH) and a heavy chain constant region. The heavy chain constant region comprises three domains, CHI, CH2 and CH3. Each light chain comprises a light chain variable region (abbreviated herein as LCVR or VL) and a light chain constant region. The light chain constant region comprises one domain (CL). The VH and VL regions can be further subdivided into regions of hypervariability, termed complementarity determining regions (CDRs), interspersed with regions that are more conserved, termed framework regions (FR). Each VH and VL is composed of three CDRs and four FRs, arranged from amino-terminus to carboxy-terminus in the following order: FR1, CDR1, FR2, CDR2, FR3, CDR3, FR4. In different embodiments of the invention, the FRs of the antibody (or antigen-binding portion thereof) may be identical to the canine germline sequences, or may be naturally or artificially modified. An amino acid consensus sequence may be defined based on a side-by-side analysis of two or more CDRs.
[0045] Antibody residues that have a substantial impact on affinity and specificity of binding to target antigen are primarily located in CDRs. Kabat et al. compiled and aligned immunoglobulin heavy and light chain sequences and were the first to propose a standardized numbering scheme for the variable regions of immunoglobulins identifying conserved and hypervariable regions and residues. (Kabat EA et al., 1979, Sequences of Immunoglobulin Chains: Tabulation and Analysis of Amino Acid Sequences of Precursors, V-regions, C-regions, J-Chain and BP-Microglobulins, Department of Health, Education, and Welfare, Public Health Service, National Institutes of Health). While the Kabat system is a widely adopted standard for numbering antibody residues, the hypervariable regions defined by Kabat do not exactly match with the structural aspects of antigen-binding loops. Chothia and Lesk developed a structure-based numbering scheme by aligning crystal structures of antibody variable regions and classified CDR loops in a small number of “canonical” classes (Chothia C, et al., 1987, Canonical structures for the hypervariable regions of immunoglobulins. J. Mol. Biol. 196:901-17. doi: 10.1016 / 0022-2836(87)90412-8). An advantage of the Chothia numbering scheme is that topologically aligned residues from different antibodies are localized at the same position number and the Chothia CDR definition corresponds in most antibody sequences to the structural antigen-binding loop. Lefranc introduced a new system based on germ-line sequences intended to standardize numbering for all proteins of the immunoglobulin superfamily, including T cell receptor chains. (Giudicelli V et al., 1997, IMGT, the international ImMunoGeneTics database. Nucleic Acids Res. 25:206-11), which was then extended to entire variable domains (Lefranc M-P et al., 2003, IMGT unique numbering for immunoglobulin and T cell receptor variable domains and Ig superfamily V-like domains. Dev Comp Immunol. 27:55-77. doi: 10.1016 / S0145-305X(02)00039-3). Additional numbering systems have been proposed to align unconventional frameworks (Abhinandan KR et al., 2008, Analysis and improvements to Kabat and structurally correct numbering of antibody variable domains. Mol Immunol. 45:3832-9. doi: 10.1016 / j.molimm.2008.05.022) and to subdivide variable chain sequences into multiple fragments including structurally invariant “cores” (Gelfand et al., 1998, Algorithmic determination of core positions in the VL and VH domains of immunoglobulin molecules. J Comput Biol. (1998) 5:467-77). In certain embodiments of the invention, CDR residues are identified according to such a standard system as set forth above. In certain embodiments, antibodies of the invention are identified by all or a subset of Kabat CDR residues of the antibody sequences set forth herein. In certain embodiments, antibodies of the invention are identified by all or a subset of Chothia CDR residues of the antibody sequences set forth herein. In certain embodiments, antibodies of the invention are identified by all or a subset of IMGT CDR residues of the antibody sequences set forth herein. In certain embodiments, antibodies of the invention are identified by CDR residues defined by two or more systems, comprising e.g., but not limited to, all or a subset of residues of amino acids of HCDR1 according to a first system, e.g. Kabat, all or a subset of residues of HCDR2 according to a second system, e.g. Chothia, all or a subset of residues of HCDR3 according to Kabat, all or a subset of residues of LCDR1 according to Kabat, all or a subset of residues of LCDR2 according to IMGT, and all or a subset of residues of LCDR3 according to Chothia. Such is just one example of identifying CDR amino acids according to more than one system. In certain embodiments, CDRs may be most conveniently or most accurately described to include amino acids selected by the Applicant. According to the invention, CDRs can be described or identified based on amino acids observed to strongly determine antigen biding and amino acids observed not to particpte in antigen binding. Framework residues are those flanking the CDRs.
[0046] For reference, the following table shows relative locations of Kabat, Chothia, and IMGT CDRs mapped on the antigen binding regions of caninized antibody 109-49 (Vh: SEQ ID NO: 10; VL SEQ ID NO:11) and and caninized antibody 186-95 (VH: SEQ ID NO: 12; VL: SEQ ID NO: 13) described herein that bind to canine IL-3 IRA. “X” represents amino acid positions starting from the amino terminal of the antibody Vh or Vl chains as follows: 109-49-Vh: X25X26X27X28X29X30X31X32X33X34X35X36 represents the positions of SGFTFDDYGMSW (SEQ ID NO:69) in the region of CDRIH, X49X50X51X52X53X54X55X56X57X58X59X60X61X62X63X64X65X66X67 represents the positions of SGINWAGGTIGYADAVKGR (SEQ ID NO :70) in the region of CDR2H, and X96X97X98X99X100X101X102X103X104X105X106X107X108X109X110X111X112X113X114X115X116X117X118X 119X120X121 represents the postions of CARESPLRLGDLGGDYFYYYYYMDVW (SEQ ID NO:71) in the region of CDR3H; 109-49-VL: X23X24X25X26X27X28X29X30X31X32X33X34X35X36 represents the postions of CRASQSVSSRYLVW (SEQ ID NO:72) in the region of CDR1L, X50X51X52X53X54X55X56X57X53 represents the postions of YGTSSRATG (SEQ ID NO:73) in the region of CDR2L, and X89X90X91X92X93X94X95X96X97X98X99 represents the postions of CQQYDNSPRTF (SEQ ID NO:74) in the region of CDR3L
[0047] 186-95-Vh: X25X26X27X28X29X30X31X32X33X34X35X36 represents the positions of SGFTFSSYAMSW (SEQ ID NO:80) in the region of CDR1H, X49X50X51X52X53X54X55X56X57X58X59X60X61X62X63X64X65X66X57 represents the positions of SAISGSGNSTYYADAVKGR (SEQ ID NO :75) in the region of CDR2H, and X96X97X98X99X100X101X102X103X104X105X106X107X108X109 represents the postions of CATQVVYYFKMDVW (SEQ ID NO:76) in the region of CDR3H; 186-95-Vl: X23X24X25X26X27X28X29X30X31X32X33X34X35 represents the postions of CKSSQSVSSNLAW (SEQ ID NO:77) in the region of CDR1L, X49X50X51X52X53X54X55X56X57 represents the postions of YGASTRASG (SEQ ID NO :78) in the region of CDR2L, and X88X89X90X91X92X93X94X95X96X97X98X99 represents the postions of CQQYYNWPPFTF (SEQ ID NO:79) in the region of CDR3L. CDR1H CDR2H Rabat Chothia IMGT 109-49 (SEQ ID NO:10) 186-95 (SEQ ID NO:12) XXXXX XXXXXXX XXXXXXXX SGFTFDDYGMSW (SEQ ID NO:69) SGFTFSSYAMSW (SEQ ID NO:80) XXXXXXXXXXXXXXXXX XXXXXX XXXXXXXX SGINWAGGTIGYADAVRGR (SEQ ID NO:70) SAISGSGNSTYYADAVRGR (SEQ ID NO:75) CDR3H Rabat Chothia IMGT 109-49 (SEQ ID NO:10) 186-95 (SEQ ID NO:12) XXXXXXXXXXXXXXXXXXXXXX xxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxx CARE S PLRLGDLGGDY FYYYYYMDVW (SEQ ID NO:71) CATQ------------VVYYFRMDVW (SEQ ID NO:76) CDR1L CDR2L Kabat Chothia IMGT 109-49 (SEQ ID NO:11) 186-95 (SEQ ID NO:13) XXXXXXXXXXXX XXXXXXXXXXXX XXXXXXX CRASQSVSSRYLVW (SEQ ID NO:72) CKSSQSVSSN-LAW (SEQ ID NO:77) XXXXXXX XXXXXXX XXX YGTSSRATG (SEQ ID NO:73) YGASTRASG (SEQ ID NO:78) CDR3L Kabat Chothia IMGT 109-49 (SEQ ID NO:11) 186-95 (SEQ ID NO:13) XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX CQQYDN-SPRTF (SEQ ID NO:74) CQQYYNWPPFTF (SEQ ID NO :79)
[0048] In one aspect, the invention provides a binding protein suitable for use in a mammal, for example, without limitation, a canine. In certain embodiments, a caninized anti-IL-3 IRA binding protein comprises a heavy chain complementarity determining region 1 (CDR1H), a heavy chain complementarity determining region 2 (CDR2H), a heavy chain complementarity determining region 3 (CDR3H), a light chain complementarity determining region 1 (CDR1L), a light chain complementarity region 2 (CDR2L), and a light chain complementarity region 3 (CDR3L). The CDRs may be designated according to Kabat, Chothia, IMGT, a combination thereof, or as otherwise set forth herein.
[0049] According to the invention, antibodies are characterized by CDRs. In embodiments where variable domain CDRs are defined according to IMGT, Kabat, or Chothia systems, the variable domain frameworks comprise the amino acids not included in the CDRs. Likewise, in embodiments where variable domain CDRs are identified by amino acid position, the variable domain frameworks comprise the amino acids not included in the CDRs.
[0050] In certain embodiments, the anti-IL-3 IRA binding protein comprises one or more (i.e. one, two, three, four, five, or all six) CDRs of a caninized anti-IL-3 IRA binding protein set forth herein. In certain embodiments, the anti-IL-3 IRA binding protein comprises one or more (i.e. one, two, three, four, five, or all six) CDRs of an affinity matured caninized antibody disclosed herein. Such CDRs may further comprise amino acid changes at one or two positions, for example incorporating an amino acid demonstrated herein to be compatible with IL-3 IRA binding or a conservative substitution.
[0051] In certain embodiments, a binding protein of the invention comprises a caninized antibody or is suitable for administration to a canine. In certain embodiments, a binding proteins of the invention comprises a felinized antibody or is suitable for administration to a feline. In certain embodiments, a binding protein of the invention comprises an equinized antibody or is suitable for administration to an equine. In certain embodiments, a binding proteins of the invention comprises a humanized antibody or is suitable for administration to a human.
[0052] In certain embodiments, an amino acid residue is mutated into one that allows the properties of the amino acid side chain to be conserved. Examples of the properties of amino acid side chains comprise: polar amino acids (C, S, T, Y, N, Q), nonpolar amino acids (A, G, I, L, M, W, F, P, V), basic amino acids (H, K, R), acidic amino acids (E, D), hydrophobic amino acids (A, I, L, M, F, P, W, Y, V), hydrophilic amino acids (R, D, N, C, E, Q, G, H, K, S, T), and amino acids comprising the following side chains: aliphatic side-chains (G, A, V, L, I, P); hydroxyl group-containing side-chains (S, T, Y); sulfur atom-containing side-chains (C, M); carboxylic acid- and amide-containing side-chains (D, N, E, Q); base-containing side-chains (R, K, H); and aromatic-containing side-chains (H, F, Y, W). The letters within parenthesis indicate the one-letter amino acid codes. Amino acid substitutions within each group are called conservative substitutions. It is well known that a polypeptide comprising a modified amino acid sequence in which one or more amino acid residues is deleted, added, and / or substituted can retain the original biological activity (MarkD. F. et al., Proc. Natl. Acad. Sci. U.S.A. 81:5662-5666 (1984); ZollerM. J. and SmithM., Nucleic Acids Res. 10: 6487-6500 (1982); Wang A. et al., Science 224: 1431-1433; Dalbadie-McFarland G. et al., Proc. Natl. Acad. Sci. U.S.A. 79: 6409-6413 (1982)). The number of mutated amino acids is not limited, but in general, the number falls within 40% of amino acids of each CDR, and preferably within 35%, and still more preferably within 30% (e.g., within 25%). The identity of amino acid sequences can be determined as described herein.
[0053] The invention provides recombinant antibodies designed or modified to minimize immunogenicity when administered to a subject, for example, without limitation, chimerization, caniniation, felinization, or humanization. In certain embodiments, the antibodies are further modified to remove T cell epitopes. Without limitation, the subject can be a canine or feline. The subject can be a human or a non-human primate. The subject can be a farm animal.
[0054] As used herein, the term “canine” refers to any member of the Canidae family. Domestic dogs, pure-bred and / or mongrel companion dogs, and wild or feral dogs are all canines.
[0055] As used herein the term “human framework” or “canine framework” refers to the amino acid sequence of the heavy chain and light chain of a canine antibody other than the hypervariable region residues defined herein as CDR residues. With regard to a humanized antibody, in certain embodiments, canine CDRs are identified in human antibody heavy and light chains variable domain sequences that closely match CDRs of IL-3 IRA-binding antibodies originating in other species. In certain embodiments, native human CDRs are replaced with the corresponding foreign CDRs (e.g., those from a rat or a mouse antibody) in both chains. With regard to a caninized antibody, in certain embodiments, canine CDRs are identified in canine antibody heavy and light chains variable domain sequences that closely match CDRs of IL-3 IRA-binding antibodies originating in other species. In certain embodiments, native canine CDRs are replaced with the corresponding foreign CDRs (e.g., those from a rat or a mouse antibody) in both chains. Optionally the heavy and / or light chains of the humanized or caninized antibody may contain some mutated or foreign non-CDR residues, e.g., framework amino acid residues that vary among germline antibody sequence or mutations that preserve the conformation of the foreign CDRs within the antibody.
[0056] Five major isotypes (IgA, IgG, IgM, IgD, IgE) and two forms of light chain (k and L) are present in dogs. In the dog, there are four subtypes for IgG, which are IgGA, IgGB, IgGC, and IgGD (Bergeron etal al, 2014, Comparative functional characterization of canine IgG subclasses. Veterinary Immunology and Immunopathology. 157:31-41). For the cat, there are three subtypes of IgG which are IgGla, IgGlb, and IgG2 (Streitzel et al. 2014, In vitro functional characterization of canine IgGs. Vet Immunol Immunopathol 158, 214-223, doi.org / 10.1016 / j.vetimm.2014.01.012).
[0057] In certain embodiments, antibodies of the invention, including but not limited to caninized, felinized, and humanized antibodies, are engineered to modulate one or more effector functions or circulation half-life. Hinge and constant domains of an antibody engage host receptors or complement protein to mediate effector functions and regulate antibody circulation. In certain embodiments, one or more effector functions is enhanced. In certain embodiments, one or more effector functions is reduced or eliminated. In certain embodiments, antibodies of the invention comprise modifications to modulate antibody-dependent cytotoxicity (ADCC) and / or complement-dependent cytotoxicity (CDC). A non-limiting example involves engineering of canine or feline constant region residues Met234 and / or Leu23 5 (EU numbering) to reduce effector function (see, e.g., Lund et al., Human Fc gamma RI and Fc gamma RII interact with distinct but overlapping sites on human IgG. J Immunol., 1991, 147:2657-62). In certain embodiments, a constant region of a canine or feline or other antibody comprises 234A and L235A substitutions. In certain embodiments, the second constant domain (CH2) and / or the third constant domain (CH3) comprises mutations and combinations of mutations compared to wild-type designed to modulate binding to FcRn (neonatal Fc) receptor. In canine constant regions, such mutations include, without limitation substitutions of Ala426, for example A426Y or A426H, substitutions of Thr286, for example T286L or T286Y, substitutions of Tyr436, for example Y436H, and combinations of such mutations including but not limited to A426Y + T286L, A426Y + Y436H, A426H + T286L, and A426H + T286Y. In certain embodiments a chimeric or caninized antibody of the invention comprises a substitution at amino acid Asn434, such as but not limited to N434H. In feline constant regions, such mutations include, without limitation substitutions of Ser428, including but not limited to S428Y or S428L, substitutions of Gln311, including but not limited to Q311V, substitutions of Leu309, including but not limited to L309V, substitutions of Thr286, including but not limited to T286E, substitutions of Glu380, including but not limited to E380T, and combinations of such mutations including but not limited to S428Y + Q311V, S428Y + L309V, S428Y + Q311V + T286E, S428Y + Q311V + E380T, and S428Y +L309V + E380T. In certain embodiments a chimeric or felinized antibody of the invention comprises a substitution at amino acid Ser428 and / or Ser434 including but not limited to S428L and / or S434H. WO 2021 / 231464 describes mutations of canine constant regions for modulating binding affinity to FcRn, including but not limited to T286L and A426Y (EU numbering). WO 2022 / 125355 likewise describes mutations of constant regions of livestock animals.
[0058] The term "antibody," as used herein, includes antigen-binding fragments of full antibody molecules. The terms "antigen-binding portion" of an antibody, "antigen-binding fragment" of an antibody, and the like, as used herein, include any naturally occurring, enzymatically obtainable, synthetic, or genetically engineered polypeptide or glycoprotein that specifically binds an antigen to form a complex. As used herein, the term "specifically binds" or "binds specifically" means that an IL-3 IRA binding protein of the invention reacts or associates more frequently, more rapidly, with greater duration and / or with greater affinity with IL-3 IRA than it does with alternative antigens. For example, IL-3 IRA binding protein binds to IL-3 IRA with materially greater affinity (e.g., at least 2-fold or 5-fold or 10-fold or 20-fold or 50-fold or 100-fold or 500-fold or 1000-fold or 10,000-fold or greater) than it does to other proteins or peptides. In certain embodiments, the IL-3 IRA-binding proteins binds to IL-3 IRA with an equilibrium dissociation constant KD for the epitope or target to which it binds of, e.g., 10'4 M or smaller, e.g., IO’5 M, IO’6 M, IO’7 M, IO'8 M, IO’9 M, IO’10 M, IO’11 M, or IO’12 M. It will be recognized by one of skill that an antibody that specifically binds to a target (e.g., IL-3 IRA) from one species may also specifically bind to orthologs of IL-3 IRA.
[0059] Antigen-binding fragments of an antibody may be derived, e.g., from full antibody molecules using any suitable standard techniques such as proteolytic digestion or recombinant genetic engineering techniques involving the manipulation and expression of DNA encoding antibody variable and optionally constant domains. Such DNA is known and / or is readily available from, e.g., commercial sources, DNA libraries (including, e.g., phage-antibody libraries), or can be synthesized. The DNA may be sequenced and manipulated chemically or by using molecular biology techniques, for example, to arrange one or more variable and / or constant domains into a suitable configuration, or to introduce codons, create cysteine residues, modify, add or delete amino acids, etc.
[0060] Non-limiting examples of antigen-binding fragments include: (i) Fab fragments; (ii) F(ab')2 fragments; (iii) Fd fragments; (iv) Fv fragments; (v) single-chain Fv (scFv) molecules; (vi) dAb fragments; and (vii) minimal recognition units consisting of the amino acid residues that mimic the hypervariable region of an antibody (e.g., an isolated complementarity determining region (CDR) such as a CDR3 peptide), or a constrained FR3-CDR3-FR4 peptide. Other engineered molecules, such as domain-specific antibodies, single domain antibodies, domain-deleted antibodies, chimeric antibodies, CDR-grafted antibodies, diabodies, triabodies, tetrabodies, minibodies, nanobodies (e.g. monovalent nanobodies, bivalent nanobodies, etc.), small modular immunopharmaceuticals (SMIPs), and shark variable IgNAR domains, are also encompassed within the expression "antigen-binding fragment," as used herein.
[0061] In certain embodiments, an antigen-binding fragment of an antibody comprises at least one variable domain. The variable domain may be of any size or amino acid composition and will generally comprise at least one CDR which is adjacent to or in frame with one or more framework sequences. In antigen-binding fragments having a VH domain associated with a VL domain, the VH and VL domains may be situated relative to one another in any suitable arrangement. For example, the variable region may be dimeric and contain VH-VH, VH-VL or VL-VL dimers. Alternatively, the antigen-binding fragment of an antibody may contain a monomeric VH or VL domain.
[0062] In certain embodiments, an antigen-binding fragment of an antibody may contain at least one variable domain covalently linked to at least one constant domain. Non-limiting, exemplary configurations of variable and constant domains that may be found within an antigenbinding fragment of an antibody of the present invention include: (i) VH-CH1; (ii) VH-CH2; (iii) VH-CH3; (iv) VH-CH1-CH2; (V) VH-CH1-CH2-CH3; (vi) VH-CH2-CH3; (vii) VH-CL; (viii) VL-CH1; (ix) VL-CH2, (x) VL-CH3; (xi) VL-CH1-CH2; (xii) VL-CH1-CH2-CH3; (xiii) VL-CH2-CH3; and (xiv) VL-CL. In any configuration of variable and constant domains, including any of the exemplary configurations listed above, the variable and constant domains may be either directly linked to one another or may be linked by a full or partial hinge or linker region. A hinge region may consist of at least 2 (e.g., 5, 10, 15, 20, 40, 60 or more) amino acids which result in a flexible or semi-flexible linkage between adjacent variable and / or constant domains in a single polypeptide molecule. Moreover, an antigen-binding fragment of an antibody of the present invention may comprise a homodimer or hetero-dimer (or other multimer) of any of the variable and constant domain configurations listed above in non-covalent association with one another and / or with one or more monomeric VH or VL domain (e.g., by disulfide bond(s)).
[0063] The term "diabody (Db)" refers to a bivalent antibody fragment constructed by gene fusion (for example, P. Holliger et al., Proc. Natl. Acad. Sci. USA 90: 6444-6448 (1993), EP 404,097, WO 93 / 11161). In general, a diabody is a dimer of two polypeptide chains. In the each of the polypeptide chains, a light chain variable region (VL) and a heavy chain variable region (VH) in an identical chain are connected via a short linker, for example, a linker of about five residues, so that they cannot bind together. Because the linker between the two is too short, the VL and VH in the same polypeptide chain cannot form a single chain V region fragment, but instead form a dimer. Thus, a diabody has two antigen-binding domains. When the VL and VH regions against the two types of antigens (a and b) are combined to form VLa-VHb and VLb-VHa via a linker of about five residues, and then co-expressed, they are secreted as bispecific Dbs. The antibodies of the present invention may be such Dbs.
[0064] A single-chain antibody (also referred to as "scFv") can be prepared by linking a heavy chain V region and a light chain V region of an antibody (for a review of scFv see Pluckthun "The Pharmacology of Monoclonal Antibodies" Vol. 113, eds. Rosenburg and Moore, Springer Verlag, N.Y., pp. 269-315 (1994)). Methods for preparing single-chain antibodies are known in the art (see, for example, U.S. Pat. Nos. 4,946,778; 5,260,203; 5,091,513; and 5,455,030). In such scFvs, the heavy chain V region and the light chain V region are linked together via a linker, preferably, a polypeptide linker (Huston, J. S. et al., Proc. Natl. Acad. Sci. U.S.A, 1988, 85, 5879-5883). The heavy chain V region and the light chain V region in a scFv may be derived from the same antibody, or from different antibodies. The peptide linker used to ligate the V regions may be any single-chain peptide consisting of 12 to 19 residues. A DNA encoding a scFv can be amplified by PCR using, as a template, either the entire DNA, or a partial DNA encoding a desired amino acid sequence, selected from a DNA encoding the heavy chain or the V region of the heavy chain of the above antibody, and a DNA encoding the light chain or the V region of the light chain of the above antibody; and using a primer pair that defines the two ends. Further amplification can be subsequently conducted using a combination of the DNA encoding the peptide linker portion, and the primer pair that defines both ends of the DNA to be ligated to the heavy and light chain respectively. After constructing DNAs encoding scFvs, conventional methods can be used to obtain expression vectors comprising these DNAs, and hosts transformed by these expression vectors. Furthermore, scFvs can be obtained according to conventional methods using the resulting hosts. These antibody fragments can be produced in hosts by obtaining genes that encode the antibody fragments and expressing these as outlined above. Antibodies bound to various types of molecules, such as polyethylene glycols (PEGs), may be used as modified antibodies. Methods for modifying antibodies are already established in the art. The term "antibody" in the present invention also encompasses the above-described antibodies.
[0065] The term "Kd" as used herein, refers to the dissociation constant of an antibody-antigen interaction. The dissociation constant, Kd, and the association constant, Ka, are quantitative measures of affinity. At equilibrium, free antigen (Ag) and free antibody (Ab) are in equilibrium with antigen-antibody complex (Ag-Ab), and the rate constants, ka and kd, quantitate the rates of the individual reactions. At equilibrium, ka [Ab][Ag]=kd [Ag-Ab], The dissociation constant, Kd, is given by: Kd=kd / ka=[Ag][Ab] / [Ag-Ab], Kd has units of concentration, most typically M, mM, nM, pM, etc. When comparing antibody affinities expressed as Kd, having greater affinity for IL-3 IRA is indicated by a lower value. The association constant, Ka, is given by: Ka=ka / kd=[Ag-Ab] / [Ag][Ab], Ka has units of inverse concentration, most typically M-l, mM-1, nM-1, pM-1, etc. As used herein, the term "avidity" refers to the strength of the antigen-antibody binding taking valency into account.
[0066] The antibodies obtained can be purified to homogeneity. The antibodies can be isolated and purified by a method routinely used to isolate and purify proteins. The antibodies can be isolated and purified by the combined use of one or more methods appropriately selected from column chromatography, filtration, ultrafiltration, salting out, dialysis, preparative polyacrylamide gel electrophoresis, and isoelectro-focusing, for example (Strategies for Protein Purification and Characterization: A Laboratory Course Manual, Daniel R. Marshak et al. eds., Cold Spring Harbor Laboratory Press (1996); Antibodies: A Laboratory Manual. Ed Harlow and David Lane, Cold Spring Harbor Laboratory, 1988). Such methods are not limited to those listed above. Chromatographic methods include affinity chromatography, ion exchange chromatography, hydrophobic chromatography, gel filtration, reverse-phase chromatography, and adsorption chromatography. These chromatographic methods can be practiced using liquid phase chromatography, such as HPLC and FPLC. Columns to be used in affinity chromatography include protein A columns and protein G columns. For example, protein A columns include Hyper D, POROS, and Sepharose F. F. (Pharmacia). Antibodies can also be purified by utilizing antigen binding, using carriers on which antigens have been immobilized.
[0067] As used herein, the term “therapeutic agent” refers to any agent or material that has a beneficial effect on the mammalian recipient. Thus, “therapeutic agent” embraces both therapeutic and prophylactic molecules having nucleic acid or protein components.
[0068] “Treating” as used herein refers to ameliorating at least one symptom of, curing and / or preventing the development of a given disease or condition.
[0069] The anti-IL-3 IRA proteins described herein, including antibodies or fragments thereof, are useful for ameliorating, or reducing the symptoms of, or treating, or preventing, diseases or conditions associated, characterized by, or caused by altered levels of IL-31. Such diseases or conditions include, without limitation, atopic dermatitis, dermatomyositis, pruritic skin disorders, allergic asthma, inflammatory bowel diseases, primary localized cutaneous amyloidosis type 2, atopic eczema, lesional dermatomyositis, and insect bite hypersensitivity. The anti-IL-3 IRA proteins or fragments, as well as combinations with other agent, are to be administered in a therapeutically effective amount to subjects in need of such treatment in the form of a pharmaceutical composition as described herein.
[0070] In certain embodiments the method comprises ameliorating, or reducing the symptoms of, or treating, or preventing disease in a subject. In certain embodiments, treatment comprises administering the anti-IL-3 IRA proteins, antibodies, or fragments thereof alone. In certain embodiments, treatment comprises administering the anti-IL-3 IRA proteins, antibodies, or fragments thereof in conjunction with a second agent used to treat, ameliorate, reduce symptoms of, or prevent the same disease or disorder or to treat a lung disease, cardiovascular disease, cancer, infectious disease, neurological disease, allergic / inflammatory disease, or metabolic disease.
[0071] Nonlimiting examples of cardiovascular diseases the antibody compositions and methods are used for ameliorating, or reducing the symptoms of, or treating, or preventing include hypertension, cardiac toxicity of anti-cancer drugs, cardiac toxicity of anthracy clines, cardiac toxicity of quinolones, heart failure regardless of origin, ischemia, heart attack, stroke, atherosclerosis, cardiac fibrillation, thrombosis and embolism.
[0072] Nonlimiting examples of infectious diseases the antibody compositions and methods are used for ameliorating, or reducing the symptoms of, or treating, or preventing include AIDS, alveolar hydatid disease (AHD, echinococcosis), amebiasis (Entamoeba histolytica infection), Angiostrongylus infection, anisakiasis, anthrax, babesiosis (Babesia infection), Balantidium infection (balantidiasis), Baylisascaris infection (raccoon roundworm), bilharzia (schistosomiasis), Blastocystis hominis infection (blastomycosis), boreliosis, botulism, Brainerd diarrhea, brucellosis, bovine spongiform encephalopathy (BSE), candidiasis, capillariasis (Capillaria infection), chronic fatigue syndrome (CFS), Chagas disease (American trypanosomiasis), chickenpox (Varicella-Zoster virus), Chlamydia pneumoniae infection, cholera, Creutzfeldt-Jakob disease (CJD), clonorchiasis (Clonorchis infection), cutaneous larva migrans (CLM) (hookworm infection), coccidioidomycosis, conjunctivitis, Coxsackievirus A16 (hand, foot and mouth disease), cryptococcosis, Cryptosporidium infection (cryptosporidiosis), Culex mosquito (West Nile virus vector), cyclosporiasis (Cyclospora infection), cysticercosis (neurocysticercosis), Cytomegalovirus infection, Dengue / Dengue fever, Dipylidium infection (dog and cat flea tapeworm), Ebola virus hemorrhagic fever, encephalitis, Entamoeba coli infection, Entamoeba dispar infection, Entamoeba hartmanni infection, Entamoeba histolytica infection (amebiasis), Entamoeba polecki infection, enterobiasis (pinworm infection), enterovirus infection (non-polio), Epstein-Barr virus infection, Escherichia coli infection, foodborne infection, foot and mouth disease, fungal dermatitis, gastroenteritis, group A streptococcal disease, group B streptococcal disease, Hansen's disease (leprosy), Hantavirus pulmonary syndrome, head lice infestation (pediculosis), Helicobacter pylori infection, hematologic disease, Hendra virus infection, hepatitis (HCV, HBV), herpes zoster (shingles), HIV Infection, human ehrlichiosis, human parainfluenza virus infection, influenza, isosporiasis (Isospora infection), Lassa fever, leishmaniasis, Kala-azar (Kala-azar, Leishmania Infection), lice (body lice, head lice, pubic lice), Lyme disease, malaria, Marburg hemorrhagic fever, measles, meningitis, mosquito-borne diseases, Mycobacterium avium complex (MAC) infection, Naegleria infection, nosocomial infections, nonpathogenic intestinal ameobae infection, onchocerciasis (river blindness), opisthorciasis (Opisthorcis infection), parvovirus infection, plague, Pneumocystis carinii pneumonia (PCP), polio, Q fever, rabies, respiratory syncytial virus (RSV) Infection, rheumatic fever, Rift Valley fever, river blindness (onchocerciasis), rotavirus infection, roundworm infection, salmonellosis, salmonella enteritidis, scabies, shigellosis, shingles, sleeping sickness, smallpox, streptococcal Infection, tapeworm infection (Taenia infection), tetanus, toxic shock syndrome, tuberculosis, ulcers (peptic ulcer disease), valley fever, Vibrio parahaemolyticus infection, Vibrio vulnificus infection, viral hemorrhagic fever, warts, waterborne infectious diseases, West Nile virus infection (West Nile encephalitis), whooping cough, yellow fever.
[0073] Nonlimiting examples of allergic / inflammatory conditions the antibody compositions and methods are used for ameliorating, or reducing the symptoms of, or treating, or preventing include, asthma, bronchial asthma, rheumatoid arthritis, inflammatory Bowel disease, type II diabetes, diabetes mellitus and deafness (DAD), Ballinger-Wallace syndrome, inflammatory diseases, rheumatic fever, pulmonary arterial hypertension, innate immune responses, cardiopulmonary diseases such as: chronic obstructive pulmonary disease, pulmonary embolism, pericarditis, coarctation of aorta, tetralogy of Fallot, aortic stenosis, mitral stenosis, aortic regurgitation, mitral regurgitation, pneumoconiosis, bronchiectasis, cardiomyopathies, and endothelial nitroglycerin tolerance.
[0074] Nonlimiting examples of lung diseases the antibody compositions and methods are used for ameliorating, or reducing the symptoms of, or treating, or preventing include, acute pneumonia, pulmonary fibrosis, interstitial pneumonia, pulmonary hypertension, chronic obstructive pulmonary disease (COPD), chronic bronchitis, pulmonary emphysema, asthma, refractory asthma, systemic inflammatory response syndrome (SIRS), lung injury acute (ALI), acute respiratory distress syndrome (ARDS), sarcoidosis, chronic idiopathic pulmonary thromboembolism, diffuse panbronchiolitis, cystic fibrosis, allergic alveolitis, lung cancer, obesity hypoventilation syndrome, alveolar hypoventilation syndrome and chronic transplant rejection pulmonary. Particularly important diseases are pulmonary fibrosis, interstitial pneumonia, pulmonary hypertension, asthma, COPD and SIRS.
[0075] Nonlimiting examples of cancers the antibody compositions and methods are used for ameliorating, or reducing the symptoms of, or treating, or preventing include cancers of the bladder, blood, bone, bone marrow, brain, breast, colon, esophagus, gastrointestinal tract, gum, head, kidney, liver, lung, nasopharynx, neck, ovary, prostate, skin, stomach, testis, tongue, or uterus, or malignant neoplasm, carcinoma, undifferentiated; giant and spindle cell carcinoma; small cell carcinoma; papillary carcinoma; squamous cell carcinoma; lymphoepithelial carcinoma; basal cell carcinoma; pilomatrix carcinoma; transitional cell carcinoma; papillary transitional cell carcinoma; adenocarcinoma; gastrinoma, malignant; cholangiocarcinoma; hepatocellular carcinoma; combined hepatocellular carcinoma and cholangiocarcinoma; trabecular adenocarcinoma; adenoid cystic carcinoma; adenocarcinoma in adenomatous polyp; adenocarcinoma, familial polyposis coli; solid carcinoma; carcinoid tumor, malignant; bronchioloalveolar adenocarcinoma; papillary adenocarcinoma; chromophobe carcinoma; acidophil carcinoma; oxyphilic adenocarcinoma; basophil carcinoma; clear cell adenocarcinoma; granular cell carcinoma; follicular adenocarcinoma; papillary and follicular adenocarcinoma; nonencapsulating sclerosing carcinoma; adrenal cortical carcinoma; endometroid carcinoma; skin appendage carcinoma; apocrine adenocarcinoma; sebaceous adenocarcinoma; ceruminous; adenocarcinoma; mucoepidermoid carcinoma; cystadenocarcinoma; papillary cystadenocarcinoma; papillary serous cystadenocarcinoma; mucinous cystadenocarcinoma; mucinous adenocarcinoma; signet ring cell carcinoma; infiltrating duct carcinoma; medullary carcinoma; lobular carcinoma; inflammatory carcinoma; Paget's disease, mammary; acinar cell carcinoma; adenosquamous carcinoma; adenocarcinoma w / squamous metaplasia; thymoma, malignant; ovarian stromal tumor, malignant; thecoma, malignant; granulosa cell tumor, malignant; and roblastoma, malignant; Sertoli cell carcinoma; Leydig cell tumor, malignant; lipid cell tumor, malignant; paraganglioma, malignant; extra-mammary paraganglioma, malignant; pheochromocytoma; glomangiosarcoma; malignant melanoma; amelanotic melanoma; superficial spreading melanoma; malignant melanoma in giant pigmented nevus; epithelioid cell melanoma; blue nevus, malignant; sarcoma; fibrosarcoma; fibrous histiocytoma, malignant; myxosarcoma; liposarcoma; leiomyosarcoma; rhabdomyosarcoma; embryonal rhabdomyosarcoma; alveolar rhabdomyosarcoma; stromal sarcoma; mixed tumor, malignant; mullerian mixed tumor; nephroblastoma; hepatoblastoma; carcinosarcoma; mesenchymoma, malignant; brenner tumor, malignant; phyllodes tumor, malignant; synovial sarcoma; mesothelioma, malignant; dysgerminoma; embryonal carcinoma; teratoma, malignant; struma ovarii, malignant; choriocarcinoma; mesonephroma, malignant; hemangiosarcoma; hemangioendothelioma, malignant; kaposi's sarcoma; hemangiopericytoma, malignant; lymphangiosarcoma; osteosarcoma; juxtacortical osteosarcoma; chondrosarcoma; chondroblastoma, malignant; mesenchymal chondrosarcoma; giant cell tumor of bone; Ewing's sarcoma; odontogenic tumor, malignant; ameloblastic odontosarcoma; ameloblastoma, malignant; ameloblastic fibrosarcoma; pinealoma, malignant; chordoma; glioma, malignant; ependymoma; astrocytoma; protoplasmic astrocytoma; fibrillary astrocytoma; astroblastoma; glioblastoma; oligodendroglioma; oligodendroblastoma; primitive neuroectodermal; cerebellar sarcoma; ganglioneuroblastoma; neuroblastoma; retinoblastoma; olfactory neurogenic tumor; meningioma, malignant; neurofibrosarcoma; neurilemmoma, malignant; granular cell tumor, malignant; malignant lymphoma; Hodgkin's disease; Hodgkin's lymphoma; paragranuloma; malignant lymphoma, small lymphocytic; malignant lymphoma, large cell, diffuse; malignant lymphoma, follicular; mycosis fungoides; other specified non-Hodgkin's lymphomas; malignant histiocytosis; multiple myeloma; mast cell sarcoma; immunoproliferative small intestinal disease; leukemia; lymphoid leukemia; plasma cell leukemia; erythroleukemia; lymphosarcoma cell leukemia; myeloid leukemia; basophilic leukemia; eosinophilic leukemia; monocytic leukemia; mast cell leukemia; megakaryoblastic leukemia; myeloid sarcoma; and hairy cell leukemia.
[0076] Nonlimiting examples of neurological diseases the antibody compositions and methods are used for ameliorating, or reducing the symptoms of, or treating, or preventing include Alzheimer's disease, Parkinson's disease, Huntington's disease, Pick's disease, Kufs disease, Lewy body disease, neurofibrillary tangles, Rosenthal fibers, Mallory's hyaline, senile dementia, myasthenia gravis, Gilles de la Tourette's syndrome, multiple sclerosis (MS), amyotrophic lateral sclerosis (ALS), progressive supranuclear palsy (PSP), epilepsy, Creutzfeldt-Jakob disease, deafness-dytonia syndrome, Leigh syndrome, Leber hereditary optic neuropathy (LHON), parkinsonism, dystonia, motor neuron disease, neuropathy-ataxia and retinitis pimentosa (NARP), maternal inherited Leigh syndrome (MILS), Friedreich ataxia, hereditary spastic paraplegia, Mohr- Tranebjaerg syndrome, Wilson disease, sporatic Alzheimer's disease, sporadic amyotrophic lateral sclerosis, sporadic Parkinson's disease, autonomic function disorders, hypertension, sleep disorders, neuropsychiatric disorders, depression, schizophrenia, schizoaffective disorder, korsakoff s psychosis, mania, anxiety disorders, phobic disorder, learning or memory disorders, amnesia or age-related memory loss, attention deficit disorder, dysthymic disorder, major depressive disorder, obsessive-compulsive disorder, psychoactive substance use disorders, panic disorder, bipolar affective disorder, severe bipolar affective (mood) disorder (BP-1), migraines, hyperactivity and movement disorders.
[0077] Nonlimiting examples of metabolic diseases the antibody compositions and methods are used for ameliorating, or reducing the symptoms of, or treating, or preventing include metabolic syndrome, diabetes (type 1 diabetes, type 2 diabetes, gestational diabetes, etc.), impaired glucose tolerance, obesity, diabetic neuropathy, diabetic retinopathy, diabetic nephropathy, dyslipidemia Diseases (hypertriglyceridemia, hypercholesterolemia, hypoHDLemia, postprandial hyperlipidemia, etc.), hypertension, hypertriglyceridemia, severe hypertriglyceridemia, hypercholesterolemia, familial, elevated cholesterol caused by a genetic condition, fatty liver disease, nonalcoholic fatty liver disease (NFLD), nonalcoholic steatohepatitis (NASH), dyslipidemia, mixed dyslipidemia, atherosclerosis, and coronary heart disease.
[0078] The anti-IL-3 IRA proteins, antibodies or antibody fragments, are optionally administered in combination with one or more active agents including other analgesic agents. Such active agents include analgesic, anti-histamine, antipyretic, anti-inflammatory, antibiotic, antiviral, and anti-cytokine agents. Active agents include agonists, antagonists, and modulators of TNF-a, IL-2, IL-4, IL-6, IL-10, IL-12, IL-13, IL-18, IFN-a, IFN-y, BAFF, CXCL13, IP-10, VEGF, EPO, EGF, HRG, Hepatocyte Growth Factor (HGF), Hepcidin, including antibodies reactive against any of the foregoing, and antibodies reactive against any of their receptors. Active agents also include, without limitation, 2-arylpropionic acids, aceclofenac, acemetacin, acetylsalicylic acid (Aspirin), alclofenac, alminoprofen, amoxiprin, ampyrone, arylalkanoic acids, azapropazone, benorylate / benorilate, benoxaprofen, bromfenac, carprofen, celecoxib, choline magnesium salicylate, clofezone, COX-2 inhibitors, dexibuprofen, dexketoprofen, diclofenac, diflunisal, droxicam, ethenzamide, etodolac, etoricoxib, faislamine, fenamic acids, fenbufen, fenoprofen, flufenamic acid, flunoxaprofen, flurbiprofen, ibuprofen, ibuproxam, indometacin, indoprofen, kebuzone, ketoprofen, ketorolac, lomoxicam, loxoprofen, lumiracoxib, magnesium salicylate, meclofenamic acid, mefenamic acid, meloxicam, metamizole, methyl salicylate, mofebutazone, nabumetone, naproxen, n-arylanthranilic acids, nerve growth factor (NGF), oxametacin, oxaprozin, oxicams, oxyphenbutazone, parecoxib, phenazone, phenylbutazone, phenylbutazone, piroxicam, pirprofen, profens, proglumetacin, pyrazolidine derivatives, rofecoxib, salicyl salicylate, salicylamide, salicylates, sulfinpyrazone, sulindac, suprofen, tenoxicam, tiaprofenic acid, tolfenamic acid, tolmetin, and valdecoxib.
[0079] An anti-histamine can be any compound that opposes the action of histamine or its release from cells (e.g., mast cells). Anti-histamines include but are not limited to acrivastine, astemizole, azatadine, azelastine, betatastine, brompheniramine, buclizine, cetirizine, cetirizine analogues, chlorpheniramine, clemastine, CS 560, cyproheptadine, desloratadine, dexchlorpheniramine, ebastine, epinastine, fexofenadine, HSR 609, hydroxyzine, levocabastine, loratidine, methscopolamine, mizolastine, norastemizole, phenindamine, promethazine, pyrilamine, terfenadine, and tranilast.
[0080] Antibiotics include but are not limited to amikacin, aminoglycosides, amoxicillin, ampicillin, ansamycins, arsphenamine, azithromycin, azlocillin, aztreonam, bacitracin, carbacephem, carbapenems, carbenicillin, cefaclor, cefadroxil, cefalexin, cefalothin, cefalotin, cefamandole, cefazolin, cefdinir, cefditoren, cefepime, cefixime, cefoperazone, cefotaxime, cefoxitin, cefpodoxime, cefprozil, ceftazidime, ceftibuten, ceftizoxime, ceftobiprole, ceftriaxone, cefuroxime, cephalosporins, chloramphenicol, cilastatin, ciprofloxacin, clarithromycin, clindamycin, cioxacillin, colistin, co-trimoxazole, dalfopristin, demeclocycline, dicloxacillin, dirithromycin, doripenem, doxycycline, enoxacin, ertapenem, erythromycin, ethambutol, flucloxacillin, fosfomycin, furazolidone, fusidic acid, gatifloxacin, geldanamycin, gentamicin, glycopeptides, herbimycin, imipenem, isoniazid, kanamycin, levofloxacin, lincomycin, linezolid, lomefloxacin, loracarbef, macrolides, mafenide, meropenem, meticillin, metronidazole, mezlocillin, minocycline, monobactams, moxifloxacin, mupirocin, nafcillin, neomycin, netilmicin, nitrofurantoin, norfloxacin, ofloxacin, oxacillin, oxytetracycline, paromomycin, penicillin, penicillins, piperacillin, platensimycin, polymyxin B, polypeptides, prontosil, pyrazinamide, quinolones, quinupristin, rifampicin, rifampin, roxithromycin, spectinomycin, streptomycin, sulfacetamide, sulfamethizole, sulfanilimide, sulfasalazine, sulfisoxazole, sulfonamides, teicoplanin, telithromycin, tetracycline, tetracyclines, ticarcillin, tinidazole, tobramycin, trimethoprim, trimethoprim-sulfamethoxazole, troleandomycin, trovafloxacin, and vancomycin.
[0081] Active agents also include aldosterone, beclometasone, betamethasone, corticosteroids, cortisol, cortisone acetate, deoxycorticosterone acetate, dexamethasone, fludrocortisone acetate, glucocorticoids, hydrocortisone, methylprednisolone, prednisolone, prednisone, steroids, and triamcinolone. Any suitable combination of these active agents is also contemplated.
[0082] Formulations and Methods of Administration
[0083] For in vivo use, a therapeutic agent as described herein is generally incorporated into a pharmaceutical composition prior to administration. Within such compositions, one or more therapeutic compounds as described herein are present as active ingredient(s) (i.e., are present at levels sufficient to provide a statistically significant effect on the symptoms of cystic fibrosis, as measured using a representative assay). A pharmaceutical composition comprises one or more such compounds in combination with any pharmaceutically acceptable carrier(s) known to those skilled in the art to be suitable for the particular mode of administration. In addition, other pharmaceutically active ingredients (including other therapeutic agents) may, but need not, be present within the composition.
[0084] The antibodies of the present invention can be formulated according to standard methods (see, for example, Remington's Pharmaceutical Science, latest edition, Mark Publishing Company, Easton, U.S.A), and may comprise pharmaceutically acceptable carriers and / or additives. The present invention relates to compositions (including reagents and pharmaceuticals) comprising the antibodies of the invention, and pharmaceutically acceptable carriers and / or additives. Exemplary carriers include surfactants (for example, PEG and Tween), excipients, antioxidants (for example, ascorbic acid), coloring agents, flavoring agents, preservatives, stabilizers, buffering agents (for example, phosphoric acid, citric acid, and other organic acids), chelating agents (for example, EDTA), suspending agents, isotonizing agents, binders, disintegrators, lubricants, fluidity promoters, and corrigents. However, the carriers that may be employed in the present invention are not limited to this list. In fact, other commonly used carriers can be appropriately employed: light anhydrous silicic acid, lactose, crystalline cellulose, mannitol, starch, carmelose calcium, carmelose sodium, hydroxypropylcellulose, hydroxypropylmethyl cellulose, polyvinylacetaldiethylaminoacetate, polyvinylpyrrolidone, gelatin, medium chain fatty acid triglyceride, polyoxyethylene hydrogenated castor oil 60, sucrose, carboxymethylcellulose, corn starch, inorganic salt, and so on. The composition may also comprise other low-molecular-weight polypeptides, proteins such as serum albumin, gelatin, and immunoglobulin, and amino acids such as glycine, glutamine, asparagine, arginine, and lysine. When the composition is prepared as an aqueous solution for injection, it can comprise an isotonic solution comprising, for example, physiological saline, dextrose, and other adjuvants, including, for example, D-sorbitol, D-mannose, D-mannitol, and sodium chloride, which can also contain an appropriate solubilizing agent, for example, alcohol (for example, ethanol), polyalcohol (for example, propylene glycol and PEG), and non-ionic detergent (polysorbate 80 and HCO-50).
[0085] If necessary, antibodies of the present invention may be encapsulated in microcapsules (microcapsules made of hydroxycellulose, gelatin, polymethylmethacrylate, and the like), and made into components of colloidal drug delivery systems (liposomes, albumin microspheres, microemulsions, nano-particles, and nano-capsules) (for example, see "Remington's Pharmaceutical Science 16th edition", Oslo Ed. (1980)). Moreover, methods for making sustained-release drugs are known, and these can be applied for the antibodies of the present invention (Langer et al., J. Biomed. Mater. Res. 15: 167-277 (1981); Langer, Chem. Tech. 12:98-105(1982); U.S. Pat. No. 3,773,919; EP Patent Application No. 58,481; Sidman et al., Biopolymers 22: 547556 (1983); EP: 133,988).
[0086] The term “therapeutically effective amount,” in reference to treating a disease state / condition, refers to an amount of a compound either alone or as contained in a pharmaceutical composition that is capable of having any detectable, positive effect on any symptom, aspect, or characteristics of a disease state / condition when administered as a single dose or in multiple doses. Such effect need not be absolute to be beneficial.
[0087] The terms “treat,” “treating” and “treatment” as used herein include administering a compound prior to the onset of clinical symptoms of a disease state / condition so as to prevent any symptom, as well as administering a compound after the onset of clinical symptoms of a disease state / condition so as to reduce or eliminate any symptom, aspect or characteristic of the disease state / condition. Such treating need not be absolute to be useful.
[0088] In certain embodiments, the present therapeutic agent may be systemically administered, e.g., orally, in combination with a pharmaceutically acceptable vehicle such as an inert diluent or an assimilable edible carrier. They may be enclosed in hard or soft shell gelatin capsules, may be compressed into tablets, or may be incorporated directly with the food of the patient's diet. For oral therapeutic administration, the active compound may be combined with one or more excipients and used in the form of ingestible tablets, buccal tablets, troches, capsules, elixirs, suspensions, syrups, wafers, and the like. Such compositions and preparations should contain at least 0.1% of active compound. The percentage of the compositions and preparations may, of course, be varied and may conveniently be between about 2 to about 60% of the weight of a given unit dosage form. The amount of active compound in such therapeutically useful compositions is such that an effective dosage level will be obtained.
[0089] The tablets, troches, pills, capsules, and the like may also contain the following: binders such as gum tragacanth, acacia, com starch or gelatin; excipients such as dicalcium phosphate; a disintegrating agent such as com starch, potato starch, alginic acid and the like; a lubricant such as magnesium stearate; and a sweetening agent such as sucrose, fructose, lactose or aspartame or a flavoring agent such as peppermint, oil of wintergreen, or cherry flavoring may be added. When the unit dosage form is a capsule, it may contain, in addition to materials of the above type, a liquid carrier, such as a vegetable oil or a polyethylene glycol. Various other materials may be present as coatings or to otherwise modify the physical form of the solid unit dosage form. For instance, tablets, pills, or capsules may be coated with gelatin, wax, shellac or sugar and the like. A syrup or elixir may contain the active compound, sucrose or fructose as a sweetening agent, methyl and propylparabens as preservatives, a dye and flavoring such as cherry or orange flavor. Of course, any material used in preparing any unit dosage form should be pharmaceutically acceptable and substantially non-toxic in the amounts employed. In addition, the active compound may be incorporated into sustained-release preparations and devices.
[0090] The active compound may also be administered intravenously or intraperitoneally by infusion or injection. Solutions of the active compound or its salts may be prepared in water, optionally mixed with a nontoxic surfactant. Dispersions can also be prepared in glycerol, liquid polyethylene glycols, triacetin, and mixtures thereof and in oils. Under ordinary conditions of storage and use, these preparations contain a preservative to prevent the growth of microorganisms.
[0091] The pharmaceutical dosage forms suitable for injection or infusion can include sterile aqueous solutions or dispersions or sterile powders comprising the active ingredient that are adapted for the extemporaneous preparation of sterile injectable or infusible solutions or dispersions, optionally encapsulated in liposomes. In all cases, the ultimate dosage form should be sterile, fluid and stable under the conditions of manufacture and storage. The liquid carrier or vehicle can be a solvent or liquid dispersion medium comprising, for example, water, ethanol, a polyol (for example, glycerol, propylene glycol, liquid polyethylene glycols, and the like), vegetable oils, nontoxic glyceryl esters, and suitable mixtures thereof. The proper fluidity can be maintained, for example, by the formation of liposomes, by the maintenance of the required particle size in the case of dispersions or by the use of surfactants. The prevention of the action of microorganisms can be brought about by various antibacterial and antifungal agents, for example, parabens, chlorobutanol, phenol, sorbic acid, thimerosal, and the like. In many cases, it will be preferable to include isotonic agents, for example, sugars, buffers or sodium chloride. Prolonged absorption of the injectable compositions can be brought about by the use in the compositions of agents delaying absorption, for example, aluminum monostearate and gelatin.
[0092] Sterile injectable solutions are prepared by incorporating the active compound in the required amount in the appropriate solvent with various of the other ingredients enumerated above, as required, followed by filter sterilization. In the case of sterile powders for the preparation of sterile injectable solutions, the preferred methods of preparation are vacuum drying and the freeze drying techniques, which yield a powder of the active ingredient plus any additional desired ingredient present in the previously sterile-filtered solutions.
[0093] Useful dosages of the compounds of the present invention can be determined by comparing their in vitro activity, and in vivo activity in animal models. In certain embodiments, a useful dose is from about 0.1 mg / kg to about 5 mg / kg or from about 0.5 mg / kg to about 2 mg / kg. Methods for the extrapolation of effective dosages in humans and animals of different sizes are known to the art; for example, see U.S. Pat. No. 4,938,949.
[0094] The amount of the compound, or an active salt or derivative thereof, required for use in treatment will vary not only with the particular salt selected but also with the route of administration, the nature of the condition being treated and the age and condition of the patient and will be ultimately at the discretion of the attendant physician or clinician.
[0095] In general, however, a suitable dose will be in the range of from about 0.5 to about 100 mg / kg, e.g., from about 10 to about 75 mg / kg of body weight per day, such as 3 to about 50 mg per kilogram body weight of the recipient per day, preferably in the range of 6 to 90 mg / kg / day, most preferably in the range of 15 to 60 mg / kg / day.
[0096] The compound is conveniently administered in unit dosage form; for example, containing 5 to 1000 mg, conveniently 10 to 750 mg, most conveniently, 50 to 500 mg of active ingredient per unit dosage form.
[0097] Ideally, the active ingredient should be administered to achieve peak plasma concentrations of the active compound of from about 0.5 to about 75 pM, preferably, about 1 to 50 pM, most preferably, about 2 to about 30 pM. This may be achieved, for example, by the intravenous injection of a 0.05 to 5% solution of the active ingredient, optionally in saline, or orally administered as a bolus containing about 1-100 mg of the active ingredient. Desirable blood levels may be maintained by continuous infusion to provide about 0.01-5.0 mg / kg / hr or by intermittent infusions containing about 0.4-15 mg / kg of the active ingredient(s).
[0098] The desired dose may conveniently be presented in a single dose or as divided doses administered at appropriate intervals, for example, as two, three, four or more sub-doses per day. The sub-dose itself may be further divided, e.g, into a number of discrete loosely spaced administrations.
[0099] Exemplary IL-31Ra receptor constructs useful for screening, identifying, and evaluating anti-IL-3 IRa antibodies that block receptor binding include the following: i) Signal peptide - amino acids 20-518 of extracellular domain (ECD) of canine IL-3 IRa -2XGGGS (SEQ ID NO:81) linker - murine IgG2A Fc (SEQ ID NO:5) MGWSCIILFLVATATGVHSVLPAKPENISCIFYYEENFTCTWSPEKEASYTWYKVKRTYS YGYKSDICSTDNSTRGNHASCSFLPPTITNPDNYTIQVEAQNADGIMKSDITYWNLDAIM KIEPPE1FSV1<SVLGI1<RMLQ1KWIRPVLAPHSS1LKYILRFR11NSAYWMEVNFH<EDID RDETYNLTELQAFTEYVMTLRCAPAESMFWSGWSQEKVGTTEEEAPYGLDLWRVLKP AMVDGRRPVQLMWKKATGAPVLEKALGYNIWYFPENNTNLTETVNTTNQTHELYLG GKTYWVYVVSYNSLGESPVATLRIPALNEKTFQCIEAMQACLTQDQLVVEWQSSAPEV DTWMVEWFPDVDSEPSSFSWESVSQARNWTIQKDELKPLWCYNISVYPVLRDRVGQPY STQAYVQEGIPSAGPVTQADSIGVKTVTITWKEIPKSKRNGFIKNYTIFYQAEDGKEFSKT VNSNILQYRLESLTRRTSYSLQVMASTNAGGTNGTKINFKTLSISVLGGGSGGGSEPRGP TIKPCPPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNN VEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPAPIERTISKPK GSVRAPQVYVLPPPEEEMTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVL DSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEGLHNHHTTKSFSRTPG* ii) Signal peptide - amino acids 20-308 of extracellular domain (ECD) of canine IL-3 IRa - AviTag - His Tag (SEQ ID NO:28) MGWSCIILFLVATATGVHSVLPAKPENISCIFYYEENFTCTWSPEKEASYTWYKVKRTYS YGYKSDICSTDNSTRGNHASCSFLPPTITNPDNYTIQVEAQNADGIMKSDITYWNLDAIM KIEPPEIFSVKSVLGIKRMLQIKWIRPVLAPHSSTLKYTLRFRT1NSAYWMEVNFTKED1D RDETYNLTELQAFTEYVMTLRCAPAESMFWSGWSQEKVGTTEEEAPYGLDLWRVLKP AMVDGRRPVQLMWKKATGAPVLEKALGYNIWYFPENNTNLTETVNTTNQTHELYLG GKTYWVYVVSYNSLGESPVATLRIPALNEKTGLNDIFEAQKIEWHEHHHHHHHH*
[00100] Without limitation, and subject to sequence variation disclosed herein, binding proteins of the invention may comprise one or more CDRs or variable domains of the following heavy and light chains (Table 1). Boundaries between variable and constant domains are depicted. Signal peptides are shown at the amino terminus for SEQ ID NO:6-13. Table 1. Heavy and Light Chain Sequences SEQ ID NO : Clone Sequence 1 Clone 109 VH EVQLVESGGG VVRPGGSLRL SCAASGFTFD DYGMSWVRQI PGRGLEWVSG INWAGGTIGY ADSVKGRFTV SRDDANNSLY LQMNSLRAED TALYLCARES PLRLGDLGGD YFYYYYYMDV WGKGTTVTVS S ASTKGPSVF PLAPSSKSTS GGTAALGCLV KDYFPEPVTV SWNSGALTSG VHTFPAVLQS SGLYSLSSVV TVPSSSLGTQ TYICNVNHKP SNTKVDKKVE PKSCDKTHTC PPCPAPEAAG GPSVFLFPPK PKDTLMISRT PEVTCVVVDV SHEDPEVKFN WYVDGVEVHN AKTKPREEQY NSTYRVVSVL TVLHQDWLNG KEYKCKVSNK ALPAPIEKTI SKAKGQPREP QVYTLPPSRE EMTKNQVSLT CLVKGFYPSD IAVEWESNGQ PENNYKTTPP VLDSDGSFFL YSKLTVDKSR WQQGNVFSCS VMHEALHNHY TQKSLSLSPG 2 Clone 109 VL EIVLTQSPGT LSLSPGERAT LSCRASQSVS SRYLVWYQQK PGQAPRLLIY GTSSRATGIP DRFSGSGSGT DFTLTISRLE PEDFAVYYCQ QYDNSPRTFG QGTKVEIK RT VAAPSVFIFP PSDEQLKSGT ASVVCLLNNF YPREAKVQWK VDNALQSGNS QESVTEQDSK DSTYSLSSTL TLSKADYEKH KVYACEVTHQ GLSSPVTKSF NRGEC 3 Clone 186 VH EVQLLESGGG LIQPGGSLRL SCGASGFTFS SYAMSWVRQA PGKGLEWVSA ISGSGNSTYY ADSVKGRFTI SRDNSKNTLY LQMNSLRAED TAVYYCATQV VYYFKMDVWG KGTTVTVSS A STKGPSVFPL APSSKSTSGG TAALGCLVKD YFPEPVTVSW NSGALTSGVH TFPAVLQSSG LYSLSSVVTV PSSSLGTQTY ICNVNHKPSN TKVDKKVEPK SCDKTHTCPP CPAPEAAGGP SVFLFPPKPK DTLMISRTPE VTCVVVDVSH EDPEVKFNWY VDGVEVHNAK TKPREEQYNS TYRVVSVLTV LHQDWLNGKE YKCKVSNKAL PAPIEKTISK AKGQPREPQV YTLPPSREEM TKNQVSLTCL VKGFYPSDIA VEWESNGQPE NNYKTTPPVL DSDGSFFLYS KLTVDKSRWQ QGNVFSCSVM HEALHNHYTQ KSLSLSPG* 4 Clone 186 VL EIVMTQSPAT LSVSPGERAT LSCRASQSVS SNLAWYRQKP GQAPRLLIYG ASTRATGIPA RFSGSGSGTE FTLTISSLQS EDFAVYYCQQ YYNWPPFTFG PGTKLDIK RT VAAPSVFIFP PSDEQLKSGT ASVVCLLNNF YPREAKVQWK VDNALQSGNS QESVTEQDSK DSTYSLSSTL TLSKADYEKH KVYACEVTHQ GLSSPVTKSF NRGEC* 6 Clone 109 canine MGWSCIILFL VATATGVHS EVQLVESGGG VVRPGGSLRL SCAASGFTFD DYGMSWVRQI PGRGLEWVSG chimeric clone H chain INWAGGTIGY ADSVKGRFTV SRDDANNSLY LQMNSLRAED TALYLCARES PLRLGDLGGD YFYYYYYMDV WGKGTTVTVS S ASTTAPSVF PLAPSCGSTS GSTVALACLV SGYFPEPVTV SWNSGSLTSG VHTFPSVLQS SGLYSLSSMV TVPSSRWPSE TFTCNVAHPA SKTKVDKPVP KRENGRVPRP PDCPKCPAPE AAGGPSVFIF PPKPKDTLLI ARTPEVTCVV VDLDPEDPEV QISWFVDGKQ MQLAKTQPRE EQFNGTYRVV SVLPIGHQDW LKGKQFTCKV NNKALPSPIE RTISKARGQA HQPSVYVLPP SREELSKNTV SLTCLIKDFF PPDIDVEWQS NGQQEPESKY RTTPPQLDED GSYFLYSKLS VDKSRWQRGD TFICYVMHEA LHNHYTQESL SHSPG* 7 Clone 109 canine chimeric clone L chain METDTLLLWV LLLWVPGSTG EIVLTQSPGT LSLSPGERAT LSCRASQSVS SRYLVWYQQK PGQAPRLLIY GTSSRATGIP DRFSGSGSGT DFTLTISRLE PEDFAVYYCQ QYDNSPRTFG QGTKVEIK RN DAQPAVYLFQ PSPDQLHTGS ASVVCLLNSF YPKDINVKWK VDGVIQDTGI QESVTEQDKD STYSLSSTLT MSSTEYLSHE LYSCEITHKS LPSTLIKSFQ RSECQRVD* 8 Clone 186 canine chimeric clone H chain MGWSCIILFL VATATGVHS EVQLLESGGG LIQPGGSLRL SCGASGFTFS SYAMSWVRQA PGKGLEWVSA ISGSGNSTYY ADSVKGRFTI SRDNSKNTLY LQMNSLRAED TAVYYCATQV VYYFKMDVWG KGTTVTVSS A STTAPSVFPL APSCGSTSGS TVALACLVSG YFPEPVTVSW NSGSLTSGVH TFPSVLQSSG LYSLSSMVTV PSSRWPSETF TCNVAHPASK TKVDKPVPKR ENGRVPRPPD CPKCPAPEAA GGPSVFIFPP KPKDTLLIAR TPEVTCVVVD LDPEDPEVQI SWFVDGKQMQ LAKTQPREEQ FNGTYRVVSV LPIGHQDWLK GKQFTCKVNN KALPSPIERT ISKARGQAHQ PSVYVLPPSR EELSKNTVSL TCLIKDFFPP DIDVEWQSNG QQEPESKYRT TPPQLDEDGS YFLYSKLSVD KSRWQRGDTF ICYVMHEALH NHYTQESLSH SPG* 9 Clone 186 canine chimeric clone L chain METDTLLLWV LLLWVPGSTG EIVMTQSPAT LSVSPGERAT LSCRASQSVS SNLAWYRQKP GQAPRLLIYG ASTRATGIPA RFSGSGSGTE FTLTISSLQS EDFAVYYCQQ YYNWPPFTFG PGTKLDIK RN DAQPAVYLFQ PSPDQLHTGS ASVVCLLNSF YPKDINVKWK VDGVIQDTGI QESVTEQDKD STYSLSSTLT MSSTEYLSHE LYSCEITHKS LPSTLIKSFQ RSECQRVD* 10 Clone 109-49 H chain MGWSCIILFL VATATGVHS EVQLVESGGD LVKPGGSLRL SCVASGFTFD DYGMSWVRQA PGKGLQWVSG INWAGGTIGY ADAVKGRFTI SRDNARNTVY LQMNSLRAED TAVYYCARES PLRLGDLGGD YFYYYYYMDV WGQGTLVTVS S ASTTAPSVF PLAPSCGSTS GSTVALACLV SGYFPEPVTV SWNSGSLTSG VHTFPSVLQS SGLYSLSSMV TVPSSRWPSE TFTCNVAHPA SKTKVDKPVP KRENGRVPRP PDCPKCPAPE AAGGPSVFIF PPKPKDTLLI ARTPEVTCVV VDLDPEDPEV QISWFVDGKQ MQLAKTQPRE EQFNGTYRVV SVLPIGHQDW LKGKQFTCKV NNKALPSPIE RTISKARGQA HQPSVYVLPP SREELSKNTV SLTCLIKDFF PPDIDVEWQS NGQQEPESKY RTTPPQLDED GSYFLYSKLS VDKSRWQRGD TFICYVMHEA LHNHYTQESL SHSPG* 11 Clone 109-49 L chain METDTLLLWV LLLWVPGSTG EVVMIQTPLS LSVSPGEPAS ISCRASQSVS SRYLVWYLQK PGQSPQLLIY GTSSRATGVS DRFSGSGSGT DFTLRISRVE AEDVGVYYCQ QYDNSPRTFG QGTKVEIK RN DAQPAVYLFQ PSPDQLHTGS ASVVCLLNSF YPKDINVKWK VDGVIQDTGI QESVTEQDKD STYSLSSTLT MSSTEYLSHE LYSCEITHKS LPSTLIKSFQ RSECQRVD* 12 Clone 186-95 H chain MGWSCIILFL VATATGVHS EVQLVESGGD LVKPGGSLRL SCVASGFTFS SYAMSWVRQA PGKGLQWVSA ISGSGNSTYY ADAVKGRFTI SRDNAKNTLY LQMNSLRAED TAVYYCATQV VYYFKMDVWG QGTLVTVSS A STTAPSVFPL APSCGSTSGS TVALACLVSG YFPEPVTVSW NSGSLTSGVH TFPSVLQSSG LYSLSSMVTV PSSRWPSETF TCNVAHPASK TKVDKPVPKR ENGRVPRPPD CPKCPAPEAA GGPSVFIFPP KPKDTLLIAR TPEVTCVVVD LDPEDPEVQI SWFVDGKQMQ LAKTQPREEQ FNGTYRVVSV LPIGHQDWLK GKQFTCKVNN KALPSPIERT ISKARGQAHQ PSVYVLPPSR EELSKNTVSL TCLIKDFFPP DIDVEWQSNG QQEPESKYRT TPPQLDEDGS YFLYSKLSVD KSRWQRGDTF ICYVMHEALH NHYTQESLSH SPG* 13 Clone 186-95 L chain METDTLLLWV LLLWVPGSTG EIVMTQSPGS LAGSAGESVS INCKSSQSVS SNLAWYQQKP GERPKLLIYG ASTRASGVPA RFSSSGSGTD FTLTINNLQA EDVGDYYCQQ YYNWPPFTFG QGTKLEIK RN DAQPAVYLFQ PSPDQLHTGS ASVVCLLNSF YPKDINVKWK VDGVIQDTGI QESVTEQDKD STYSLSSTLT MSSTEYLSHE LYSCEITHKS LPSTLIKSFQ RSECQRVD*
[00101] Without limitation, and subject to sequence variation disclosed herein, binding proteins of the invention may comprise one or more CDRs or variable domains of the following of the following heavy and light chains (Table 2). Boundaries of variable and constant domains are depicted. Signal peptides are shown at the amino terminus for SEQ ID NO: 14-20. Table 2. Clone 109-49 Heavy and Light Chain Sequence Variants 14 Clone 10949 Heavy Chain W53Y variant MGWSCIILFL VATATGVHS EVQLVESGGD LVKPGGSLRL SCVASGFTFD DYGMSWVRQA PGKGLQWVSG INYAGGTIGY ADAVKGRFTI SRDNARNTVY LQMNSLRAED TAVYYCARES PLRLGDLGGD YFYYYYYMDV WGQGTLVTVS S ASTTAPSVF PLAPSCGSTS GSTVALACLV SGYFPEPVTV SWNSGSLTSG VHTFPSVLQS SGLYSLSSMV TVPSSRWPSE TFTCNVAHPA SKTKVDKPVP KRENGRVPRP PDCPKCPAPE AAGGPSVFIF PPKPKDTLLI ARTPEVTCVV VDLDPEDPEV QISWFVDGKQ MQLAKTQPRE EQFNGTYRVV SVLPIGHQDW LKGKQFTCKV NNKALPSPIE RTISKARGQA HQPSVYVLPP SREELSKNTV SLTCLIKDFF PPDIDVEWQS NGQQEPESKY RTTPPQLDED GSYFLYSKLS VDKSRWQRGD TFICYVMHEA LHNHYTQESL SHSPG* 15 Clone 10949 Heavy Chain W53F variant MGWSCIILFL VATATGVHS EVQLVESGGD LVKPGGSLRL SCVASGFTFD DYGMSWVRQA PGKGLQWVSG INFAGGTIGY ADAVKGRFTI SRDNARNTVY LQMNSLRAED TAVYYCARES PLRLGDLGGD YFYYYYYMDV WGQGTLVTVS S ASTTAPSVF PLAPSCGSTS GSTVALACLV SGYFPEPVTV SWNSGSLTSG VHTFPSVLQS SGLYSLSSMV TVPSSRWPSE TFTCNVAHPA SKTKVDKPVP KRENGRVPRP PDCPKCPAPE AAGGPSVFIF PPKPKDTLLI ARTPEVTCVV VDLDPEDPEV QISWFVDGKQ MQLAKTQPRE EQFNGTYRVV SVLPIGHQDW LKGKQFTCKV NNKALPSPIE RTISKARGQA HQPSVYVLPP SREELSKNTV SLTCLIKDFF PPDIDVEWQS NGQQEPESKY RTTPPQLDED GSYFLYSKLS VDKSRWQRGD TFICYVMHEA LHNHYTQESL SHSPG* 16 Clone 10949 Heavy Chain M118L variant MGWSCIILFL VATATGVHS EVQLVESGGD LVKPGGSLRL SCVASGFTFD DYGMSWVRQA PGKGLQWVSG INWAGGTIGY ADAVKGRFTI SRDNARNTVY LQMNSLRAED TAVYYCARES PLRLGDLGGD YFYYYYYLDV WGQGTLVTVS S ASTTAPSVF PLAPSCGSTS GSTVALACLV SGYFPEPVTV SWNSGSLTSG VHTFPSVLQS SGLYSLSSMV TVPSSRWPSE TFTCNVAHPA SKTKVDKPVP KRENGRVPRP PDCPKCPAPE AAGGPSVFIF PPKPKDTLLI ARTPEVTCVV VDLDPEDPEV QISWFVDGKQ MQLAKTQPRE EQFNGTYRVV SVLPIGHQDW LKGKQFTCKV NNKALPSPIE RTISKARGQA HQPSVYVLPP SREELSKNTV SLTCLIKDFF PPDIDVEWQS NGQQEPESKY RTTPPQLDED GSYFLYSKLS VDKSRWQRGD TFICYVMHEA LHNHYTQESL SHSPG* 17 Clone 10949 Heavy Chain M118I variant MGWSCIILFL VATATGVHS EVQLVESGGD LVKPGGSLRL SCVASGFTFD DYGMSWVRQA PGKGLQWVSG INWAGGTIGY ADAVKGRFTI SRDNARNTVY LQMNSLRAED TAVYYCARES PLRLGDLGGD YFYYYYYIDV WGQGTLVTVS S ASTTAPSVF PLAPSCGSTS GSTVALACLV SGYFPEPVTV SWNSGSLTSG VHTFPSVLQS SGLYSLSSMV TVPSSRWPSE TFTCNVAHPA SKTKVDKPVP KRENGRVPRP PDCPKCPAPE AAGGPSVFIF PPKPKDTLLI ARTPEVTCVV VDLDPEDPEV QISWFVDGKQ MQLAKTQPRE EQFNGTYRVV SVLPIGHQDW LKGKQFTCKV NNKALPSPIE RTISKARGQA HQPSVYVLPP SREELSKNTV SLTCLIKDFF PPDIDVEWQS NGQQEPESKY RTTPPQLDED GSYFLYSKLS VDKSRWQRGD TFICYVMHEA LHNHYTQESL SHSPG* 18 Clone 10949 Heavy Chain W53F + M118I variant MGWSCIILFL VATATGVHS EVQLVESGGD LVKPGGSLRL SCVASGFTFD DYGMSWVRQA PGKGLQWVSG INFAGGTIGY ADAVKGRFTI SRDNARNTVY LQMNSLRAED TAVYYCARES PLRLGDLGGD YFYYYYYIDV WGQGTLVTVS S ASTTAPSVF PLAPSCGSTS GSTVALACLV SGYFPEPVTV SWNSGSLTSG VHTFPSVLQS SGLYSLSSMV TVPSSRWPSE TFTCNVAHPA SKTKVDKPVP KRENGRVPRP PDCPKCPAPE AAGGPSVFIF PPKPKDTLLI ARTPEVTCVV VDLDPEDPEV QISWFVDGKQ MQLAKTQPRE EQFNGTYRVV SVLPIGHQDW LKGKQFTCKV NNKALPSPIE RTISKARGQA HQPSVYVLPP SREELSKNTV SLTCLIKDFF PPDIDVEWQS NGQQEPESKY RTTPPQLDED GSYFLYSKLS VDKSRWQRGD TFICYVMHEA LHNHYTQESL SHSPG* 19 Clone 10949 Light chain N94Q variant METDTLLLWV LLLWVPGSTG EWMIQTPLS LSVSPGEPAS ISCRASQSVS SRYLVWYLQK PGQSPQLLIY GTSSRATGVS DRFSGSGSGT DFTLRISRVE AEDVGVYYCQ QYDQSPRTFG QGTKVEIK RN DAQPAVYLFQ PSPDQLHTGS ASVVCLLNSF YPKDINVKWK VDGVIQDTGI QESVTEQDKD STYSLSSTLT MSSTEYLSHE LYSCEITHKS LPSTLIKSFQ RSECQRVD* 20 Clone 10949 Light chain S95A variant METDTLLLWVLLLWVPGSTG EWMIQTPLS LSVSPGEPAS ISCRASQSVS SRYLVWYLQK PGQSPQLLIY GTSSRATGVS DRFSGSGSGT DFTLRISRVE AEDVGVYYCQ QYDNAPRTFG QGTKVEIK RN DAQPAVYLFQ PSPDQLHTGS ASVVCLLNSF YPKDINVKWK VDGVIQDTGI QESVTEQDKD STYSLSSTLT MSSTEYLSHE LYSCEITHKS LPSTLIKSFQ RSECQRVD*
[00102] Without limitation, and subject to sequence variation disclosed herein, binding proteins of the invention may comprise one or more CDRs or variable domains of the following of the following heavy and light chains (Table 3). Boundaries of variable and constant domains are depicted. Signal peptides are shown at the amino terminus for SEQ ID NO:21-27. Table 3. Clone 186-95 Heavy and Light Chain Sequence Variants 21 Clone 18695 heavy chain N56Q variant MGW S C11L FLVATATGVH S EVQLVESGGD LVKPGGSLRL SCVASGFTFS SYAMSWVRQA PGKGLQWVSA ISGSGQSTYY ADAVKGRFTI SRDNAKNTLY LQMNSLRAED TAVYYCATQV VYYFKMDVWG QGTLVTVSS A STTAPSVFPL APSCGSTSGS TVALACLVSG YFPEPVTVSW NSGSLTSGVH TFPSVLQSSG LYSLSSMVTV PSSRWPSETF TCNVAHPASK TKVDKPVPKR ENGRVPRPPD CPKCPAPEAA GGPSVFIFPP KPKDTLLIAR TPEVTCVVVD LDPEDPEVQI SWFVDGKQMQ LAKTQPREEQ FNGTYRVVSV LPIGHQDWLK GKQFTCKVNN KALPSPIERT ISKARGQAHQ PSVYVLPPSR EELSKNTVSL TCLIKDFFPP DIDVEWQSNG QQEPESKYRT TPPQLDEDGS YFLYSKLSVD KSRWQRGDTF ICYVMHEALH NHYTQESLSH SPG* 22 Clone 18695 heavy chain S57A variant MGWSCIILFL VATATGVHS EVQLVESGGD LVKPGGSLRL SCVASGFTFS SYAMSWVRQA PGKGLQWVSA ISGSGNATYY ADAVKGRFTI SRDNAKNTLY LQMNSLRAED TAVYYCATQV VYYFKMDVWG QGTLVTVSS A STTAPSVFPL APSCGSTSGS TVALACLVSG YFPEPVTVSW NSGSLTSGVH TFPSVLQSSG LYSLSSMVTV PSSRWPSETF TCNVAHPASK TKVDKPVPKR ENGRVPRPPD CPKCPAPEAA GGPSVFIFPP KPKDTLLIAR TPEVTCVVVD LDPEDPEVQI SWFVDGKQMQ LAKTQPREEQ FNGTYRVVSV LPIGHQDWLK GKQFTCKVNN KALPSPIERT ISKARGQAHQ PSVYVLPPSR EELSKNTVSL TCLIKDFFPP DIDVEWQSNG QQEPESKYRT TPPQLDEDGS YFLYSKLSVD KSRWQRGDTF ICYVMHEALH NHYTQESLSH SPG* 23 Clone 18695 heavy chain M106L variant MGWSCIILFL VATATGVHS EVQLVESGGD LVKPGGSLRL SCVASGFTFS SYAMSWVRQA PGKGLQWVSA ISGSGNSTYY ADAVKGRFTI SRDNAKNTLY LQMNSLRAED TAVYYCATQV VYYFKLDVWG QGTLVTVSS A STTAPSVFPL APSCGSTSGS TVALACLVSG YFPEPVTVSW NSGSLTSGVH TFPSVLQSSG LYSLSSMVTV PSSRWPSETF TCNVAHPASK TKVDKPVPKR ENGRVPRPPD CPKCPAPEAA GGPSVFIFPP KPKDTLLIAR TPEVTCVVVD LDPEDPEVQI SWFVDGKQMQ LAKTQPREEQ FNGTYRVVSV LPIGHQDWLK GKQFTCKVNN KALPSPIERT ISKARGQAHQ PSVYVLPPSR EELSKNTVSL TCLIKDFFPP DIDVEWQSNG QQEPESKYRT TPPQLDEDGS YFLYSKLSVD KSRWQRGDTF ICYVMHEALH NHYTQESLSH SPG* 24 Clone 18695 heavy chain M106I variant MGWSCIILFL VATATGVHS EVQLVESGGD LVKPGGSLRL SCVASGFTFS SYAMSWVRQA PGKGLQWVSA ISGSGNSTYY ADAVKGRFTI SRDNAKNTLY LQMNSLRAED TAVYYCATQV VYYFKIDVWG QGTLVTVSS A STTAPSVFPL APSCGSTSGS TVALACLVSG YFPEPVTVSW NSGSLTSGVH TFPSVLQSSG LYSLSSMVTV PSSRWPSETF TCNVAHPASK TKVDKPVPKR ENGRVPRPPD CPKCPAPEAA GGPSVFIFPP KPKDTLLIAR TPEVTCVVVD LDPEDPEVQI SWFVDGKQMQ LAKTQPREEQ FNGTYRVVSV LPIGHQDWLK GKQFTCKVNN KALPSPIERT ISKARGQAHQ PSVYVLPPSR EELSKNTVSL TCLIKDFFPP DIDVEWQSNG QQEPESKYRT TPPQLDEDGS YFLYSKLSVD KSRWQRGDTF ICYVMHEALH NHYTQESLSH SPG* 25 Clone 18695 heavy chain N56Q + M106L variant MGW S C11L FLVATATGVH S EVQLVESGGD LVKPGGSLRL SCVASGFTFS SYAMSWVRQA PGKGLQWVSA ISGSGQSTYY ADAVKGRFTI SRDNAKNTLY LQMNSLRAED TAVYYCATQV VYYFKLDVWG QGTLVTVSS A STTAPSVFPL APSCGSTSGS TVALACLVSG YFPEPVTVSW NSGSLTSGVH TFPSVLQSSG LYSLSSMVTV PSSRWPSETF TCNVAHPASK TKVDKPVPKR ENGRVPRPPD CPKCPAPEAA GGPSVFIFPP KPKDTLLIAR TPEVTCVVVD LDPEDPEVQI SWFVDGKQMQ LAKTQPREEQ FNGTYRVVSV LPIGHQDWLK GKQFTCKVNN KALPSPIERT ISKARGQAHQ PSVYVLPPSR EELSKNTVSL TCLIKDFFPP DIDVEWQSNG QQEPESKYRT TPPQLDEDGS YFLYSKLSVD KSRWQRGDTF ICYVMHEALH NHYTQESLSH SPG* 26 Clone 18695 light chain W94Y variant METDTLLLWVLLLWVPGSTG EIVMTQSPGS LAGSAGESVS INCKSSQSVS SNLAWYQQKP GERPKLLIYG ASTRASGVPA RFSSSGSGTD FTLTINNLQA EDVGDYYCQQ YYNYPPFTFG QGTKLEIK RN DAQPAVYLFQ PSPDQLHTGS ASVVCLLNSF YPKDINVKWK VDGVIQDTGI QESVTEQDKD STYSLSSTLT MSSTEYLSHE LYSCEITHKS LPSTLIKSFQ RSECQRVD* 27 Clone 18695 light chain W94F variant METDTLLLWVLLLWVPGSTG EIVMTQSPGS LAGSAGESVS INCKSSQSVS SNLAWYQQKP GERPKLLIYG ASTRASGVPA RFSSSGSGTD FTLTINNLQA EDVGDYYCQQ YYNFPPFTFG QGTKLEIK RN DAQPAVYLFQ PSPDQLHTGS ASVVCLLNSF YPKDINVKWK VDGVIQDTGI QESVTEQDKD STYSLSSTLT MSSTEYLSHE LYSCEITHKS LPSTLIKSFQ RSECQRVD*
[00103] Although the present invention and its advantages have been described in detail, it should be understood that various changes, substitutions and alterations can be made herein without departing from the spirit and scope of the invention as defined in the appended claims.
[00104] The present invention will be further illustrated in the following Examples which are given for illustration purposes only and are not intended to limit the invention in any way. Examples Example 1: Generation and characterization of human antibodies 109 and 186
[00105] Eight Trianni human IgG transgenic mice (https: / / www.nature.com / articles / d43747-020-00174-5.pdf) were immunized using a mammalian expression vector containing the cDNA of canine IL-31 receptor alpha (IL-3 IRA) (XP_013963900.1) using a proprietary method of DNA immunization. Serum titer response was assessed by incubating a dilution series with cells transiently expressing canine IL-31 receptor alpha (IL-3 IRA). Binding of antigen-specific antibodies to the cells was then detected using a fluorescently labeled secondary antibody via high-throughput, plate-based flow cytometry. Following 14 weeks of immunization, all eight mice had substantial titers against canine IL-3 IRA.
[00106] Lymph nodes, spleen and bone marrow were collected from immunized mice with significant serum titers against canine IL-31 receptor alpha (IL-3 IRA). The cells from all tissues were isolated and enriched for plasma cells and the enriched plasma cell suspension was injected into an AbCellera microfluidic screening device.
[00107] Single B cells secreting canine IL-3 IRA-specific antibodies were identified and isolated using a cell-based assay consisting of cells transiently transfected with canine IL-3 IRA. Binding was detected using a fluorescently labeled secondary antibody specific to mouse Fc. Positive hits were identified using machine vision and recovered using automated robotics-based protocols. Single cell polymerase chain reaction (PCR) and custom molecular biology protocols generated NGS sequencing libraries (MiSeq, Illumina) using automated workstations (Bravo, Agilent). Sequencing data were analyzed using a custom bioinformatics pipeline to yield paired heavy and light chain sequences for each recovered antibody-secreting cell. A total of-350,000 cells were screened. 643 binders were recovered from the screening device for sequencing, and 422 high confidence sequences were obtained. 241 unique antibodies were identified and then annotated with the closest germline (V[D]J) genes and degree of somatic hypermutation. Antibodies were considered members of the same clonal family if they shared the same heavy and light V and J genes and had the same CDR3 length. Seventy-two clonal families were identified, and ninety-two antibodies were selected for expression and purification based on diversity and lack of cysteine liabilities. The variable (V[D]J) region of each antibody chain was synthesized and inserted into a mammalian expression vector with a human IgGl constant domain for the heavy chains or a human kappa or lambda constant domain for the light chains. Heavy and light chain expression vectors were transiently transfected into HEK 293F cells and the antibodies purified with protein A chromatography. The antibodies were formulated in phosphate buffered saline (PBS), pH 7.2. Purified antibodies were quantified by UV absorption spectrophotometry at 280 nm. Ninety-one of the ninety-two antibodies expressed at sufficient levels for characterization of binding and functional activity. Example 2: Inhibition of IL-31 signaling by anti-canine IL-3 IRA antibodies
[00108] Anti-canine IL-3 IRA antibodies were tested for their ability to block IL-31 signaling through IL-3 IRA using canine DH-82 cells. The level of pSTAT3 in the DH82 cells was monitored to detect IL-3 IRA signaling. The AlphaLISA SureFire Ultra p-STAT3 assay kit (Perkin-Elmer, Cat# ALSU-PST3-A-HV) was used to quantitatively detect phospho-STAT3 levels in the lysates of treated DH82 cells. [00109J Canine DH-82 canine cells (ATCC CRL-10389, Lot:70031117) were cultured in Eagles’ Minimum Essential Medium (EMEM) with 15% fetal bovine serum. On day 1 of the assay, cells were seeded into a 96-well flat-bottom tissue culture plate at 40,000 cells / well with 100 pl medium and placed at 37 °C in 5% CO2 overnight until stimulation. On day 2, the cells were stimulated with 50 pL of a 30 ng / mL canine interferon-y solution (IFN-y, R&D Systems, 781-CG-050). On day 3 of the assay, 130 pL of medium was slowly removed from each well and then 200 pL of serum-free EMEM was added dropwise and removed. Finally, 180 pL of serum-free EMEM was added in slowly. The cells were then incubated for two hours at 37 °C. The medium was carefully removed from the DH-82 cells and replaced with 45 pL of anti-canine IL-3 IRA antibodies or human IgGl isotype control (Southern Biotech; Cat# 0151K-01) diluted in EMEM for 30 minutes at 37 °C. 5 pL of recombinant canine IL-31 (Novus, Cat# NBP2-59591) at 20 pg / mL was added. After 5 minutes at room temperature, all medium was removed from the wells, and the cells were lysed in 50 uL of IX lysis buffer (provided in the Perkin-Elmer ALSU-PST3-A-HV kit) and agitated as per the manufacturer's protocol. Next, 30 pL of the lysates were then transferred to a 96-well plate (Perkin-Elmer, cat # 6002350) for the AlphaLISA SureFire Ultra Assay and the manufacturer’s protocol was followed thereafter. The ninety-one antibodies were tested in the functional assay with canine DEI-82 cells. The antibodies were tested at 100 nM in duplicate. The top two antibodies for inhibition in this assay were clones 109 and 186 (SEQ ID NOs:l-4). These two antibodies were retested in the functional assay with a dilution series and both antibodies were able to effectively block the IL-31 signaling (Figure 1). Example 3: Binding of clones 109 and 186 to canine IL-3 IRA
[00110] The clones 109 and 186 were evaluated for their binding to the extracellular domain of canine IL-3 IRA fused to murine IgG2A Fc (SEQ ID NO:5) by SPR. Canine IL-3 IRA-murine IgG2A Fc was generated by transiently transfecting pcDNA3.4 containing Sequence 3 into GenScript HD (High Density) CHO-S cells and purified with MabSelect SuRe LX chromatography. Further purification of the recombinant protein was completed using gel filtration with TSKgel G3000SWxi chromatography. Antibodies 109 and 186 were captured on to the Cytiva sensor chip with a Human Antibody Capture Kit (BRI 00839). Antibodies were flowed over the anti-human IgG sensor chip at a concentration of 1 pg / ml in lx HBS-EP+ (Cytiva, BR100826) for 60 seconds at a flow rate of 10 pL / min. Canine IL-31RA-mFc (100 nM, 50 nM, 25 nM, 12.5 nM, 6.25 nM, 3.625 cam nM) solutions in lx HBS-EP+ was flown over the sensor chips for a contact time of 120s and a dissociation time of 600s at a flow rate of 30 pL / min. Double reference-subtracted sensorgrams were fitted to a 1:1 binding model using Biacore T200 Evaluation software and the kinetics of binding are shown below in Table 4. Table 4. Affinity of antibody 109 and 186 for canine IL-3 IRA Antibody ka (1 / Ms) kd (1 / s) Kd (M) Rm ax (RU) 109 2.14E+05 1.08E-04 5.06E-10 153 186 6.52E+04 1.18E-04 1.81E-09 114 Example 4: Caninization of antibody clones 109 and 186
[00111] The antibody clones 109 and 186 were caninized by replacing the human frameworks with canine germline frameworks. Using a proprietary informatics method, six heavy chain germline canine frameworks were selected along with fifteen light chain germline frameworks for caninizing antibody clone 109. The same informatics method was used to select three heavy chain germline canine frameworks and three light chain germline canine frameworks for caninizing antibody clone 186. The heavy and light CDRs as defined by the Kabat definition were grafted into the selected heavy and light chain frameworks. The DNA for these caninized constructs were synthesized with the canine IgGB constant and kappa constant domains. In addition, the canine constant domains were fused with the heavy and light chain variable domains of clones 109 and 186 to generate canine chimeric constructs (SEQ ID NOS:6-9). The constructs were cloned into a proprietary mammalian expression vector. Each of the different heavy and light chains were paired and co-transfected into HEK 293 cells and the IgGs in the conditioned medium were purified with MabSelect SuRe protein A resin. The antibodies were buffered exchanged into 20 mM acetate, 136 mM NaCl, pH 5.5. An SPR assay was completed on the caninized antibodies using a Carterra instrument. The antigen which is Canine IL-3 IRA-murine IgG2A Fc is a dimer and was also aggregated so the apparent affinities were very high because of avidity effects from antigen. Two of the caninized clones with the highest affinities from the SPR experiments were 49 for clone 109 (109-49) and 95 for clone 186 (186-95). The sequences for clones 109-49 and 1 SO-95 are shown in sequences 10 - 13 of Table 1 (SEQ ID NOs: 10-13). Antibody clone 109-49 has the canine framework IGHV3-41 for the heavy chain and IGKV2-20 for the kappa light chain. Antibody clone 186-95 has the canine framework IGHV3-9 for the heavy chain and IGKV4-15 for the light chain. These two caninized clones and the parental canine chimeric antibodies were evaluated for their ability to block IL-31 signaling in canine DH-82 cells using the pSTAT3 protocol described above. The graphs for the antibody inhibition of IL-3 IRA are shown in Figures 2 and 3. Example 5: Removal ofpotential sequence liabilities from antibody clones 109-49 and 186-95
[00112] There are potential aspartate isomerization sites and oxidation sites at methionine or tryptophan residues in both antibody clone 109-49 and 186-95. Aspartate isomerization or oxidation in the CDRs can potentially reduce the potency and the stability of an antibody (Xu et al., 2019. MABS, 11:239-264). Below in Table 5 are the IMGT CDR residues for both antibodies, and underlined, bold residues are potential sequence liabilities. Table 5. CDR sequences for caninized antibodies 109-49 and 186-95 Caninized Antibody § HCDRl i HCDR2 HCDR3 LCDR1 J LCDR2 LCDR3 109-49 § GFTFDDYG § (SEQ ID § NO:29) INWAGGT § (SEQ ID § NO:3C) AR ESP LRLG D LG G D YFYYYYYM D (SEQ ID NO:31) QSVSSRY § (SEQ ID NO:32) § GTS QQYDNSPRT (SEQ ID NO:33) 186-95 § GFTFSSYA § (SEQ ID | NO:34) § LSGSGNST § (SEQ ID j NO:35) ATQVVYYFKMDV (SEQ ID NO:36) QSVSSN § (SEQ ID NO:37) § GAS QQYYNWPPFT (SEQ NO:38)
[00113] For antibody clone 109-49, the heavy chain variants W53Y, W53F, Ml 18L, and Ml 181 and the light chain variants N94Q and S95L were generated to identify residues that don’t reduce the potency of the antibody and remove the potential liability (see Table 2) (SEQ ID NOs: 14-17 and 19-20). The individual variants along with the wild-type 109-49 heavy and light chains were synthesized and subcloned into the mammalian expression vector pcDNA 3.4 (ThermoFisher). The different heavy and light chain combinations were co-transfected into ExpiCHO cells using the ExpiCHO transfection kit (ThermoFisher; Cat. # A29133). Seven days following the transient transfection, the IgG in the conditioned medium was purified using MabSelect SuRe chromatography. The antibodies were buffer-exchanged into PBS, pH 7.4 The relative affinity of the variants was determined by SPR on a Biacore T200. The antibody was captured using a CM5 Series S chip amine coupled with an anti-dog H+L antibody (Jackson Immunoresearch). Canine IL-31RA-mFc (100 nM, 50 nM, 25 nM, 12.5 nM, 6.25 nM, 3.625 nM) solutions in lx HBS-EP+ was flown over the sensor chip for a contact time of 120s and a dissociation time of 600s at a flow rate of 30 pL / min. Double reference-subtracted sensorgrams were fitted to a 1:1 binding model using Biacore T200 Evaluation software. The canine IL-3 IRA antigen was both a dimer and aggregated so there were avidity effects with the measured affinities. For these experiments, the relative affinity of the variants is reported using the following scale: 3 pM ->100 pM = 3 stars; 101 pM -> 1 nM = 2 stars; and 1.1 nM -> 20 nM = 1 star and is shown in Table 6. Following the initial results with the single variants, a heavy chain containing the W53F variant and the Ml 181 variant was synthesized and subcloned into pcDNA 3.4 (SEQ ID NO: 18). The same methods as described above for expression and purification of the variant along with measuring the relative affinity were used to determine the relative affinity of the W53F / M118I heavy chain variant combined with the S95A light chain and the N94Q light chain variants. Table 6. Relative af fmities of antibody 109-49 variants. HC Variants LC Variants HCDR2 HCDR3 LCDR3 Relative Affinity Wild-type Wild-type INWAGGT (SEQ ID NQ:30) ARESPLRLGDLGGDYFYYYYYMD (SEQ ID NO:31) QQYDNSPRT 410(SEQID NO:33) *** W53Y Wild-type INYAGGT (SEQ ID NO:39) ARESPLRLGDLGGDYFYYYYYMD (SEQ ID NO:31) QQYDNSPRT (SEQ ID NO:33) * W53F Wild-type INFAGGT (SEQ ID NQ:40) ARESPLRLGDLGGDYFYYYYYMD (SEQ ID NO:31) QQYDNSPRT (SEQ ID NO:33) * M118L Wild-type INWAGGT (SEQ ID NQ:30) ARESPLRLGDLGGDYFYYYYYLD (SEQ ID NO:41) QQYDNSPRT (SEQ ID NO:33) * M118I Wild-type INWAGGT (SEQ ID NQ:30) AR ES P LR LG D LGG DYFYYYYYI D (SEQ ID NO:42) QQYDNSPRT (SEQ ID NO:33) *** Wild-type N94Q INWAGGT (SEQ ID NQ:30) ARESPLRLGDLGGDYFYYYYYMD (SEQ ID NO:31) QQYDQSPRT (SEQ ID NO:43) ** Wild-type S95A INWAGGT (SEQ ID NQ:30) ARESPLRLGDLGGDYFYYYYYMD (SEQ ID NO:31) QQYDNAPRT (SEQ ID NO:44) *** M118I S95A INWAGGT (SEQ ID NQ:30) AR ES P LR LG D LGG DYFYYYYYI D (SEQ ID NO:42) QQYDNAPRT (SEQ ID NO:44) *** M118I N94Q INWAGGT (SEQ ID NQ:30) AR ES P LR LG D LGG DYFYYYYYI D (SEQ ID NO:42) QQYDQSPRT (SEQ ID NO:43) *** W53F- M118I S95A INFAGGT (SEQ ID NQ:40) AR ES P LR LG D LGG DYFYYYYYI D (SEQ ID NO:42) QQYDNAPRT (SEQ ID NO:44) * W53F- M118I N94Q INFAGGT (SEQ ID NQ:40) AR ES P LR LG D LGG DYFYYYYYI D (SEQ ID NO:42) QQYDQSPRT (SEQ ID NO:43) *
[00114] For antibody clone 186-95, the heavy chain variants N56Q, S57A, Ml 06L, and M1061 and the light chain variants W94Y and W94F were generated to identify residues that don’t reduce the potency of the antibody and remove the potential liability (see Table 3) (SEQ ID NOs:21 - 24, 26 and 27). Using the same methods as described for the 109-49 variants, the 186-95 variants were synthesized, expressed, purified and the affinities to canine IL-3 IRA were determined with SPR. Similar to the Biacore experiments with the 109-49 variants, the canine-IL-3 IRA-murine Fc protein resulting in avidity effects and artificially high apparent affinities. The relative affinities for the affinities are reported using the same scale as described for the 109-49 variants and shown in Table 7. Following the initial results with the single variants, a 186-95 heavy chain containing the N56Q variant and the M106L variant was synthesized and subcloned into pcDNA 3.4 (SEQ ID NO:25). The same methods as described above for expression and purification of the variant along with measuring the relative affinity were used to determine the relative affinity of the N56Q / M106L heavy chain variant combined with the W94F light chain and the W94Y light chain variants. Table 7. Relative affinities of antibody 186-95 variants HC Variants LC Variants HCDR2 HCDR3 LCDR3 Relative Affinity Wild-type Wild-type ISGSGNST (SEQ IE NO:35) ATQVVYYFKMDV (SEQ IE NO:36) QQYYNWPPFT (SEQ IE NO:38) *** N56Q Wild-type ISGSGQST (SEQ IE NO:45) ATQVVYYFKMDV (SEQ IE NO:36) QQYYNWPPFT (SEQ IE NO:38) *** S57A Wild-type ISGSGNAT (SEQ IE NO:46) ATQVVYYFKMDV (SEQ IE NO:36) QQYYNWPPFT (SEQ IE NO:38) *** M106L Wild-type ISGSGNST (SEQ IE NO:35) ATQVVYYFKLDV (SEQ IE NO:47) QQYYNWPPFT (SEQ IE NO:38) *** M106I Wild-type ISGSGNST (SEQ IE NO:35) ATQVVYYFKIDV (SEQ IE NO:48) QQYYNWPPFT (SEQ IE NO:38) *** Wild-type W94Y ISGSGNST (SEQ IE NO:35) ATQVVYYFKMDV (SEQ IE NO:36) QQYYNYPPFT (SEQ IE NO:49) *** Wild-type W94F ISGSGNST (SEQ IE NO:35) ATQVVYYFKMDV (SEQ IE NO:36) QQYYNFPPFT (SEQ IE NQ:50) *** N56Q-M106L W94F ISGSGQST (SEQ IE NO:45) ATQVVYYFKLDV (SEQ IE NO:47) QQYYNFPPFT (SEQ IE NQ:50) *** N56Q-M106L W94Y ISGSGQST (SEQ IE NO:45) ATQVVYYFKLDV (SEQ IE NO:47) QQYYNYPPFT (SEQ IE NO:49) ***
[00115] To reduce the avidity effects from using the canine IL-31RA-mouse Fc construct in SPR experiments, a monomeric construct was generated which contains amino acids 20-308 of the canine IL-3 IRA extracellular domain (SEQ ID NO:28). This construct has the AviTag sequence (GLNDIFEAQKIEWHE (SEQ ID NO:51)) followed by an 8X His( SEQ ID NO:52) tag to facilitate purification. GenScript HD (High Density) CHO-S cells were transiently transfected with pcDNA 3.4 containing Sequence 28 and purified with HisTrap FF chromatography. Further purification of the recombinant protein was completed using gel filtration with Cytiva HiLoad 26 / 600 Superdex chromatography to isolate the monomeric IL-3 IRA species. Two of the best caninized clones with their potential sequence liabilities removed are 109-49 containing the Ml 181 and S95A variants which is referred to as 109-49_IA (SEQ ID NOs:17 and 20) and 186-95 containing the N56Q, M106L, and W94F variants which is referred to as 186-95 QLF (SEQ ID NOs:25 and 27). These clones were evaluated in an SPR experiment using the same conditions as described for the caninized clones except the analyte is canine IL-3 IRA (20-308). The affinity of 109-49 IA and 186-95 QLF for canine IL-3 IRA (20-308) are shown below in Table 8. Table 8. Affinities of 109-49 IA and 186-95 QLF for canine IL-3 IRA (20-308) Caninized Antibody ka (1 / Ms) kd (1 / s) KD(M) Rmax (RU) 109-49_IA 5.44E+4 7.09E-05 1.31E-09 83 186-95_QLF 6.98E+4 1.61E-04 2.31E-09 112
[00116] Antibody clones 109-49 IA and 186-95 QLF were evaluated for their ability to block IL-31 signaling in canine DH-82 cells using the pSTAT3 protocol described above for the caninized antibody clones 109 and 186 (Figure 4). * * *
[00117] Having thus described in detail preferred embodiments of the present invention, it is to be understood that the invention defined by the above paragraphs is not to be limited to particular details set forth in the above description as many apparent variations thereof are possible without departing from the spirit or scope of the present invention.
Claims
1. An antigen binding protein that specifically binds to interleukin-31 receptor alpha (IL-3 IRA), which comprises:(a) a heavy chain complementarity determining region 1 (HCDR1) comprising X26X27X28X29X30X31X32X33 (SEQ ID NO:53), wherein X26 comprises A, G, I, L, M, W, F, P, or V, X27 comprises A, G, I, L, M, W, F, P, V, or Y, X28 comprises C, S, T, Y, N, or Q, X29 comprises A, G, I, L, M, W, F, P, V, or Y, X30 comprises D or E, X31 comprises D or E, X32 comprises C, S, T, Y, N, or Q, and X33 comprises A, G, I, L, M, W, F, P, or V;(b) a heavy chain complementarity determining region 2 (HCDR2) comprisingX51X52X53X54X55X56X57 (SEQ ID NO:54), wherein X51 comprises A, G, I, L, M, W, F, P, or V, X52 comprises C, S, T, Y, N, or Q, X53 comprises A, I, L, M, F, P, W, Y, or V, X54 comprises A, G, I, L, M, W, F, P, or V, X55 comprises A, G, I, L, M, W, F, P, or V, X56 comprises A, G, I, L, M, W, F, P, or V, and X57 comprises C, S, T, Y, N, or Q;(c) a heavy chain complementarity determining region 3 (HCDR3) comprisingX97X98X99X100X101X102X103X104X105X106X107X108X109X110X111X112X113X114X115X116 X117X118X119 (SEQ ID NO:55), wherein X97 comprises A, G, I, L, M, W, F, P, or V, X98 comprises H, K, or R, X99 comprises E or D, X100 comprises C, S, T, Y, N, or Q, X101 comprises A, G, I, L, M, W, F, P, or V, X102 comprises A, G, I, L, M, W, F, P, or V, X103 comprises H, K, or R, X104 comprises A, G, 1, L, M, W, F, P, or V, X105 comprises A, G, I, L, M, W, F, P, or V, X106 comprises E or D, X107 comprises A, G, I, L, M, W, F, P, or V, Xios comprises A, G, I, L, M, W, F, P, or V, X109 comprises A, G, I, L, M, W, F, P, or V, Xno comprises E or D, Xm comprises C, S, T, Y, N, or Q, X112 comprises A, G, I, L, M, W, F, P, V, or Y, X113 comprises an C, S, T, Y, N, or Q, X114 comprises C, S, T, Y, N, or Q, X115 comprises C, S, T, Y, N, or Q, Xue comprises C, S, T, Y, N, or Q, X117 comprises C, S, T, Y, N, or Q, Xus comprises A, G, I, L, M, W, F, P, or V, and X119 comprises E or D;(d) a light chain complementarity determining region 1 (LCDR1) comprising X27X28X29X30X31X32X33 (SEQ ID NO:56), wherein X27 comprises C, S, T, Y, N, or Q, X28 comprises C, S, T, Y, N, or Q, X29 comprises A, G, I, L, M, W, F, P, or V, X30comprises C, S, T, Y, N, or Q, X31 comprises C, S, T, Y, N, or Q, X32 comprises H, K, or R, and X33 comprises C, S, T, Y, N, or Q;(e) a light chain complementarity determining region 2 (LCDR2) comprising X51X52X53, wherein X51 comprises A, G, I, L, M, W, F, P, or V, X52 comprises C, S, T, Y, N, or Q, and X53 comprises C, S, T, Y, N, or Q; and(f) a light chain complementarity determining region 3 (LCDR3) comprising X90X91X92X93X94X95X96X97X98 (SEQ ID NO:57), wherein X90 comprises C, S, T, Y, N, or Q, X91 comprises C, S, T, Y, N, or Q, X92 comprises C, S, T, Y, N, or Q, X93 comprises E or D, X94 comprises C, S, T, Y, N, or Q, X95 comprises C, L, S, T, Y, N, or Q, X96 comprises A, G, I, L, M, W, F, P, or V, X97 comprises H, K, or, R, and X98 comprises C, S, T, Y, N, or Q.
2. The antigen-binding protein of claim 1, wherein:(a) HCDR1 comprises GFTFDDYG (SEQ ID NO:29) or differs at no more than one or two positions; and / or(b) HCDR2 comprises INX53AGGT (SEQ ID NO:58), wherein X53 comprises F, W, or Y; and / or(c) HCDR3 comprises ARESPLRLGDLGGDYFYYYYYXhsD (SEQ ID NO:59), wherein Xus comprises I, L, or M; and / or(d) LCDR1 comprises QSVSSRY (SEQ ID NO:32) or differs at no more than one or two positions; and / or(e) LCDR2 comprises GTS or differs at no more than one or two positions; and / or(f) LCDR3 comprises QQYDX94X95PRT (SEQ ID NO:60), wherein X94 comprises N, or Q, and X95 comprises S or L.
3. The antigen-binding protein of claim 1, which comprises the heavy chain variable domain CDRs of SEQ ID NO: 17 and the light chain variable domain CDRs of SEQ ID NO:20.
4. The antigen binding protein of claim 3, wherein the antigen binding protein comprises a heavy chain variable domain at least 80%, at least 85%, at least 90%, at least 95%, at least 97%, at least 98%, at least 99%, or 100% identical to SEQ ID NO: 17, and a light chainvariable domain at least 80%, at least 85%, at least 90%, at least 95%, at least 97%, at least 98%, at least 99%, or 100% identical to SEQ ID NO:20.
5. The antigen binding protein of any one of claims 1 or 2, wherein the heavy chain variable domain comprises W53F, W53Y, Ml 181, orM118L and / or the light chain variable domain comprises N94Q or S95L.
6. The antigen binding protein of any one of claims 1 or 2, wherein the heavy chain variable domain comprises the IMGT CDRs of SEQ ID NO: 1, SEQ ID NO: 10, SEQ ID NO: 14, SEQ ID NO: 15, SEQ ID NO: 16, or SEQ ID NO: 17, and wherein the light chain variable domain comprises the IMGT CDRs of SEQ ID NO:2, SEQ ID NO: 11, SEQ ID NO: 19, or SEQ ID NO:20.
7. The antigen binding protein of any one of claims 1 or 2, wherein the antigen binding protein comprises a heavy chain variable domain at least 80%, at least 85%, at least 90%, at least 95%, at least 97%, at least 98%, at least 99%, or 100% identical to a heavy chain variable domain of SEQ ID NO: 1, SEQ ID NOTO, SEQ ID NO: 14, SEQ ID NO: 15, SEQ ID NO: 16, or SEQ ID NO: 17, and a light chain variable domain at least 80%, at least 85%, at least 90%, at least 95%, at least 97%, at least 98%, at least 99%, or 100% identical to a light chain variable domain of SEQ ID NO:2, SEQ ID NO: 11, SEQ ID NO: 19, or SEQ ID NO:20.
8. An antigen binding protein that specifically binds to IL-3 IRA, which comprises: (a) a heavy chain complementarity determining region 1 (HCDR1) comprisingX26X27X28X29X30X31X32X33 (SEQ ID NO:61), wherein X26 comprises A, G, I, L, M, W, F, P, or V, X27 comprises A, G, I, L, M, W, F, P, V, or Y, X28 comprises C, S, T, Y, N, or Q, X29 comprises A, G, I, L, M, W, F, P, V, of Y, X30 comprises C, S, T, Y, N, or Q, X31 comprises C, S, T, Y, N, or Q, X32 comprises C, S, T, Y, N, or Q, and X33 comprises A, G, I, L, M, W, F, P, or V;(b) a heavy chain complementarity determining region 2 (HCDR2) comprising X51X52X53X54X55X56X57 (SEQ ID NO:62), wherein X5i comprises A, G, I, L, M, W, F, P, or V, X52 comprises C, S, T, Y, N, or Q, X53 comprises A, G, I, L, M, W, F, P, or V, X54 comprises C, S, T, Y, N, or Q, X55 comprises A, G, I, L, M, W, F, P, or V, X56 comprises C, S, T, Y, N, or Q, and X57 comprises A, C, S, T, Y, N, or Q;(c) a heavy chain complementarity determining region 3 (HCDR3) comprising X97X98X99X100X101X102X103X104X105X106X107 (SEQ ID NO:63), wherein X97 comprises A, G, I, L, M, W, F, P, or V, X98 comprises C, S, T, Y, N, or Q, X99 comprises C, S, T, Y, N, or Q, X100 comprises A, G, I, L, M, W, F, P, or V, X101 comprises A, G, I, L, M, W, F, P, or V, X102 comprises C, S, T, Y, N, or Q, X103 comprises C, S, T, Y, N, or Q, X104 comprises A, G, I, L, M, W, F, P, V, or Y, X105 comprises H, K, or R, X106 comprises A, G, I, L, M, W, F, P, or V, and X107 comprises E or D;(d) a light chain complementarity determining region 1 (LCDR1) comprising X27X28X29X30X31X32 (SEQ ID NO:64) wherein X27 comprises C, S, T, Y, N, or Q, X28 comprises C, S, T, Y, N, or Q, X29 comprises A, G, I, L, M, V, W, F, P, or V, X30 comprises C, S, T, Y, N, or Q, X31 comprises C, S, T, Y, N, or Q, and X32 comprises C, S, T, Y, N, or Q;(e) a light chain complementarity determining region 2 (LCDR2) comprising X50X51X52, wherein X50 comprises A, G, I, L, M, W, F, P, or V, X51 comprises A, G, I, L, M, W, F, P, or V, and X52 comprises C, S, T, Y, N, or Q; and(f) a light chain complementarity determining region 3 (LCDR3) comprising X89X90X91X92X93X94X95X96X97X98 (SEQ ID NO:65), wherein Xs9 comprises C, S, T, Y, N, or Q, X90 comprises C, S, T, Y, N, or Q, X91 comprises A, G, I, L, M, W, F, P, V, or Y, X92 comprises A, G, I, L, M, W, F, P, V, or Y, X93 comprises C, S, T, Y, N, or Q, X94 comprises A, I, L, M, F, P, W, Y, or V, X95 comprises A, G, I, L, M, W, F, P, or V, X96 comprises A, G, I, L, M, W, F, P, or V, X97 comprises A, G, I, L, M, W, F, P, V, or Y, and X98 comprises C, S, T, Y, N, or Q.
9. The antigen-binding protein of claim 8, wherein:(a) HCDR1 comprises GFTFSSYA (SEQ ID NO:34); and / or(b) HCDR2 comprise ISGSGX56X57T (SEQ ID NO:66), wherein X56 comprises N, or Q; and X57 comprises A or S; and / or(c) HCDR3 comprises ATQVVYYFKXioeDV (SEQ ID NO:67), wherein Xi06 comprises I, L, or M; and / or(d) LCDR1 comprises QSVSSN (SEQ ID NO:37); and / or(e) LCDR2 comprises GAS; and / or(f) LCDR3 comprises QQYYNX94PPFT (SEQ ID NO:68), wherein X94 comprises F, Y, orW.
10. The antigen binding protein of claim 8, which comprises the heavy chain variable domain CDRs of SEQ ID NO:25 and the light chain variable domain CDRs of SEQ ID NO:27.
11. The antigen binding protein of claim 10, wherein the antigen binding protein comprises a heavy chain variable domain at least 80%, at least 85%, at least 90%, at least 95%, at least 97%, at least 98%, at least 99%, or 100% identical to SEQ ID NO:25, and a light chain variable domain at least 80%, at least 85%, at least 90%, at least 95%, at least 97%, at least 98%, at least 99%, or 100% identical to SEQ ID NO:27.
12. The antigen binding protein of any one of claims 8 or 9, wherein the heavy chain variable domain comprises N56Q, S57A, M106I, or M106L and / or the light chain variable domain comprises W94F or W94Y.
13. The antigen binding protein of any one of claims 8 or 9, wherein the heavy chain variable domain comprises the IMGT CDRs of SEQ ID NO:3, SEQ ID NO: 12, SEQ ID NO:21, SEQ ID NO:22, SEQ ID NO:23, SEQ ID NO:24, or SEQ ID NO:25, and wherein the light chain variable domain comprises the IMGT CDRs of SEQ ID NO:4, SEQ ID NO: 13, SEQ ID NO:26, or SEQ ID NO:27.
14. The antigen binding protein of any one of claims 8 or 9, wherein the antigen binding protein comprises a heavy chain variable domain at least 80%, at least 85%, at least 90%, at least 95%, at least 97%, at least 98%, at least 99%, or 100% identical to a heavy chain variable domain of SEQ ID NO:3, SEQ ID NO: 12, SEQ ID NO:21, SEQ ID NO:22, SEQ ID NO:23, SEQ ID NO:24, or SEQ IDNO:25, and a light chain variable domain at least 80%, at least 85%, at least 90%, at least 95%, at least 97%, at least 98%, at least 99%, or 100% identical to a light chain variable domain of SEQ ID NO:4, SEQ ID NO: 13, SEQ ID NO:26, or SEQ ID NO:27.
15. An isolated nucleic acid sequence encoding an anti-IL-3 IRA antigen binding protein of any one of claims 1 to 14.
16. A vector that comprises the nucleic acid of claim 15.
17. A recombinant cell which comprises the nucleic acid of claim 15 or the vector of claim 16.
18. A cell that expresses the antigen binding protein of any one of claims 1 to 14 or the nucleic acid of claim 15 or the vector of claim 16.
19. A method of producing the antigen binding protein of any one of claims 1 to 14, which comprises culturing the cell of claim 18 under conditions that result in production of the antigen binding protein.
20. A pharmaceutical composition comprising a therapeutically effective amount of the anti-IL-3 IRA protein of any one of claims 1 to 14.
21. A method of suppressing atopic dermatitis in a subject, which comprises administering to the subject a therapeutically effective amount of an anti-IL-3 IRA protein of any one of claims 1 to 14.
22. A method of inhibiting binding of IL-31 to anti-IL-31A in a subject, which comprises administering to the subject a therapeutically effective amount of the anti-TL-3 IRA antigen binding protein of any one of claims 1 to 14.
23. The method of any one of claims 21 to 22, wherein the subject comprises a human, a canine, a feline, or an equine.
24. A method of detecting anti-IL-3 IRA in a sample comprising incubating the sample with an anti-IL-3 IRA protein of any one claims 1 to 14 and detecting the anti-IL-3 IRA protein bound to IL-3 IRA in the sample.