A dual-labeled primer system for nucleic acid library source quality control and uses thereof

By using a dual-label primer system targeting the PCARE gene and the IFT140 gene transcript variant X25, the problem of sequence origin differentiation in DNA/RNA co-construction libraries was solved, achieving high-accuracy quality control, reducing costs and improving detection efficiency.

CN121674543BActive Publication Date: 2026-06-05HANGZHOU MATRIDX BIOTECH CO LTD

Patent Information

Authority / Receiving Office
CN · China
Patent Type
Patents(China)
Current Assignee / Owner
HANGZHOU MATRIDX BIOTECH CO LTD
Filing Date
2026-02-10
Publication Date
2026-06-05

AI Technical Summary

Technical Problem

Existing DNA/RNA co-construction library technologies cannot effectively distinguish the source of sequences, leading to errors in pathogen identification, quantification distortion, and problems such as species interference, sequencing resource consumption, poor degradation tolerance, and low economic efficiency in exogenous quality control schemes.

Method used

Using a first primer pair targeting the PCARE gene and a second primer pair targeting the IFT140 gene transcript variant X25, nucleic acid fragments derived from DNA and RNA were specifically amplified, respectively. By detecting the depth ratio of the amplicon in high-throughput sequencing, qualitative discrimination and quantitative monitoring of DNA and RNA-derived nucleic acid fragments were achieved.

Benefits of technology

No exogenous sequences need to be added, thus avoiding species interference, reducing costs, improving detection accuracy, ensuring the effective use of sequencing resources, and accurately reflecting the initial state of the sample, eliminating quantitative distortion.

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Abstract

The present application relates to the technical field of high-throughput sequencing, and discloses a double-labeled primer system for nucleic acid library source quality control and application thereof. The existing DNA / RNA co-library technology cannot distinguish nucleic acid template sources, and the exogenous spike-in quality control method has the problems of interference risk, high cost and low efficiency. The present application provides a double-labeled primer system, which comprises: a first primer pair targeting the PCARE gene for specifically amplifying nucleic acid fragments of DNA origin; and a second primer pair targeting the IFT140 gene transcript variant X25 for specifically amplifying nucleic acid fragments of RNA origin. Based on the above system, by detecting the depth and ratio of the two amplicons in high-throughput sequencing, qualitative discrimination and quantitative monitoring of DNA and RNA source components in the nucleic acid library can be realized. The present application does not need to add exogenous sequences, and has the advantages of no interference, low cost and high accuracy.
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