Compounds and compositions as c-kit kinase inhibitors

Abstract

The invention provides novel compounds, pharmaceutical compositions, and their use for inhibiting c-kit kinase activity.

Description

COMPOUNDS AND COMPOSITIONS AS c-Kit KINASE INHIBITORSCROSS REFERENCE TO RELATED APPLICATIONS

[0001] This application claims the benefit of and priority to United States Provisional Patent Application serial number 63 / 430,920, filed December 7, 2022; the contents of which are hereby incorporated by reference.FIELD OF THE INVENTION

[0002] The present disclosure relates generally to various compounds and compositions useful as a selective inhibitor of c-kit kinase and uses of the same in the treatment of c-kit kinase associated diseases, disorders, and conditions.BACKGROUND

[0003] Compounds of the present disclosure are selective inhibitors of c-kit kinase, useful for the depletion of mast cells and thus is useful for treating mast-cell associated diseases including, inter alia, asthma, allergic rhinitis, pulmonary arterial hypertension (PAH), primary pulmonary hypertension (PPH), pulmonary fibrosis, hepatic fibrosis, cardiac fibrosis, scleroderma, irritable bowel syndrome (IBS), inflammatory bowel disease (IBD), urticaria, dermatosis, atopic dermatitis, allergic contact dermatitis, rheumatoid arthritis, multiple sclerosis, melanoma, a gastrointestinal stromal tumor, a mast cell tumor, mastocytosis, anaphylactic syndrome, food allergy, chronic rhinosinusitis, type I diabetes, type II diabetes, systemic sclerosis, allergic keratoconjunctivitis, vernal keratoconjunctivitis, Crohn’s disease, or systemic and cutaneous lupus erythematosus and dermatomyositis. Exemplary other mast-cell diseases are described further herein.

[0004] There remains a need in the art for novel compounds, compositions and methods for treating mast-cell associated diseases.SUMMARY

[0005] The present disclosure provides compounds, compositions, and methods of treating c- kit kinase mediated diseases comprising administering to a patient in need thereof a compound of the present disclosure, or a pharmaceutical salt or composition thereof. In general, the compoundsand methods disclosed herein are useful for treating mast-cell associated diseases as described herein.

[0006] In some embodiments, a compound of the present disclosure is represented by Formula I:

[0007] or a pharmaceutically acceptable salt thereof, where the variables are as defined in the detailed description. Further description of such compounds is described herein in the detailed description. The compounds may be part of a pharmaceutical composition comprising a pharmaceutically acceptable carrier.

[0008] In some embodiments, a compound of the present disclosure is represented by Formula 1-1 :(1-1) or a pharmaceutically acceptable salt thereof, where the variables are as defined in the detailed description. Further description of such compounds is described herein in the detailed description. The compounds may be part of a pharmaceutical composition comprising a pharmaceutically acceptable carrier.

[0009] In some embodiments, the invention provides a method of treating a disorder mediated by c-kit kinase in a subject. The method comprises administering a therapeutically effective amount of a compound described herein, such as a compound of Formula I, to a subject in needthereof to treat the disorder, as further described in the detailed description. The method comprises administering a therapeutically effective amount of a compound described herein, such as a compound of Formula I- 1 , to a subject in need thereof to treat the disorder, as further described in the detailed description.

[0010] In some embodiments, the invention provides methods of inhibiting c-kit kinase activity. Some such methods comprise contacting c-kit kinase with an effective amount of a compound described herein, such as a compound of Formula I, to inhibit c-kit kinase activity, as further described in the detailed description. Other such methods comprise contacting c-kit kinase with an effective amount of a compound described herein, such as a compound of Formula 1-1, to inhibit c-kit kinase activity, as further described in the detailed description.DETAILED DESCRIPTION

[0011] The present disclosure is based at least in part on the identification of novel compounds that modulate c-kit kinase and methods of using the same to treat c-kit kinase associated diseases. Disclosed herein are compounds represented by Formula I:or a pharmaceutically acceptable salt thereof; wherein:RAis of either of the following structures:each of which is substituted by n occurrences of R3;R3represents independently for each occurrence oxo, halogen, -CN, -NO2, -OR, -OCR3, -SR, -NR2, -S(O)2R, -S(O)2NR2, -S(O)R, -S(O)NR2, -C(R)2OR, -C(O)R, -C(O)OR, - C(O)NR2, -C(O)N(R)OR, -OC(O)R, -OC(O)NR2,N(R)C(O)OR, -N(R)C(O)R, -N(R)C(O)NR2, -N(R)C(NR)NR2, –N(R)NR2, -N(R)S(O)2NR2, – N(R)S(O)2R, –N=S(O)R2, –S(NR)(O)R, –N(R)S(O)R, –N(R)CN, -L2-R5, or an optionally substituted group selected from C1-6 aliphatic, C1-6 haloaliphatic, phenyl, naphthalenyl, a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring; a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur; or a 5-6 membered monocyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; an 8-10 membered bicyclic heteroaryl ring having 1-5 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 5-8 membered saturated or partially unsaturated bridged bicyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 6-11 membered saturated or partially unsaturated spirocyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; or a 6-11 membered saturated or partially unsaturated bicyclic heterocyclic ring having 1-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; each of which is substituted with r instances of R; or: two R3groups on adjacent carbon atoms are taken together with the carbon atoms to which they attach to form an optionally substituted 4-7 membered saturated monocyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur, substituted with r instances of R; L2represents independently for each occurrence a C1-6bivalent saturated or unsaturated, straight or branched hydrocarbon chain wherein one, two, or three methylene units of the chain are optionally and independently replaced by –C(R)2-, –N(R)-, -N(R)C(O)-, - C(O)N(R)-, -N(R)S(O)2-, -S(O)2N(R)-, -O-, -C(O)-, -OC(O)-, -C(O)O-, -S-, -S(O)-, –S(O)2- or -Cy-; Cy represents independently for each occurrence phenyl, a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring or a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur; R5represents independently for each occurrence hydrogen, OR, C1-6 aliphatic, C1-6 haloaliphatic, or phenyl fused to a 5-6 membered saturated heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur;X is O or S; R1represents independently for each occurrence halogen, -CN, -OR, -NR2, -C(O)R, - C(O)OR, -C(O)NR2, C1-6 alkyl, or C1-6 haloalkyl; L is a bond or –N(R)-, -N(R)C(O)-, -N(R)C(O)N(R)-, -C(O)N(R)-, -N(R)S(O)2- , -S(O)2N(R)-, -O-, -C(O)-, -OC(O)-, -C(O)O-, -S-, -S(O)-, or –S(O)2-; RBis phenyl, a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring; a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur; or a 5-6 membered monocyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; wherein RBis substituted with q occurrences of R2; R2represents independently for each occurrence halogen, oxo, C1-6aliphatic, phenyl, a 3- 7 membered saturated or partially unsaturated monocyclic carbocyclic ring; a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur; or a 5-6 membered monocyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; an 8-10 membered bicyclic heteroaryl ring having 1-5 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 5-10 membered saturated or partially unsaturated bridged bicyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 6-11 membered saturated or partially unsaturated spirocyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; or a 6-11 membered saturated or partially unsaturated bicyclic heterocyclic ring having 1-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur, or L1-R4; wherein R2is substituted with p occurrences of R6; L1represents independently for each occurrence a C1-2bivalent saturated straight or branched hydrocarbon chain wherein one methylene unit of the chain is optionally and independently replaced by –C(R)2-, –N(R)-, -N(R)C(O)-, -C(O)N(R)-, -N(R)S(O)2- , -S(O)2N(R)-, -O-, -C(O)-, -OC(O)-, -C(O)O-, -S-, -S(O)-, or –S(O)2-; R4represents independently for each occurrence a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring, or a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur;R6represents independently for each occurrence oxo, halogen, –CN, –NO2, –OR, -OCR3, -SR, -NR2, -S(O)2R, -S(O)2NR2, -S(O)R, -S(O)NR2, -C(R)2OR, -C(O)R, -C(O)OR, – C(O)NR2, -C(O)N(R)OR, -OC(O)R, -OC(O)NR2, - N(R)C(O)OR, -N(R)C(O)R, -N(R)C(O)NR2, -N(R)C(NR)NR2, –N(R)NR2, -N(R)S(O)2NR2, –N(R)S(O)2R, –N=S(O)R2, –S(NR)(O)R, –N(R)S(O)R, –N(R)CN, or optionally substituted phenyl; R7is hydrogen or C1-3alkyl; each R is independently hydrogen, -CN, halogen, or an optionally substituted group selected from C1-6 aliphatic; phenyl; C1-6 haloaliphatic; naphthalenyl; a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring; a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 5-6 membered monocyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; an 8-10 membered bicyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 7-12 membered saturated or partially unsaturated bicyclic heterocyclic ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 5-8 membered saturated or partially unsaturated bridged bicyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 6-10 membered saturated or partially unsaturated spirocyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 6-11 membered saturated or partially unsaturated bicyclic carbocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur; or: two R groups on the same nitrogen are taken together with the nitrogen to form an optionally substituted 4-7 membered monocyclic saturated, partially unsaturated, or heteroaryl ring having, in addition to the nitrogen, 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; an 8-10 membered bicyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 7-12 membered saturated or partially unsaturated bicyclic heterocyclic ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; m is 0 or 1; n is 0, 1, 2, 3, 4, or 5;p is 0, 1, 2, 3, 4, or 5; and q is 0, 1, 2, 3, 4, or 5.

[0012] Further disclosed herein are compounds of Formula 1-1:(1-1) or a pharmaceutically acceptable salt thereof; wherein:RAis of either of the following structures:each of which is substituted by n occurrences of R3;R3represents independently for each occurrence oxo, halogen, -CN, -NO2, -OR, -OCRs, -SR, -NR2, -S(O)2R, -S(O)2NR2, -S(O)R, -S(O)NR2, -C(R)2OR, -C(O)R, -C(O)OR, - C(O)NR2, -C(O)N(R)OR, -OC(O)R, -OC(O)NR2,N(R)C(O)OR, -N(R)C(O)R, -N(R)C(O)NR2, -N(R)C(NR)NR2, -N(R)NR2, -N(R)S(O)2NR2, - N(R)S(O)2R, N=S(O)R2, S(NR)(O)R, N(R)S(O)R, -N(R)CN, -L2-R5, or an optionally substituted group selected from C1-6 aliphatic, C1-6 haloaliphatic, phenyl, naphthalenyl, a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring; a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur; or a 5-6 membered monocyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; an 8-10 membered bicyclic heteroaryl ring having 1-5 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 5-8 membered saturated or partially unsaturated bridged bicyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 6-11 membered saturated or partially unsaturated spirocyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; or a 6-11 membered saturated or partially unsaturated bicyclic heterocyclic ring having 1-3 heteroatomsindependently selected from nitrogen, oxygen, and sulfur; each of which is substituted with r instances of R; or: two R3groups on adjacent carbon atoms are taken together with the carbon atoms to which they attach to form an optionally substituted 4-7 membered saturated monocyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur, substituted with r instances of R; L2represents independently for each occurrence a C1-6bivalent saturated or unsaturated, straight or branched hydrocarbon chain wherein one, two, or three methylene units of the chain are optionally and independently replaced by –C(R)2-, –N(R)-, -N(R)C(O)-, - C(O)N(R)-, -N(R)S(O)2-, -S(O)2N(R)-, -O-, -C(O)-, -OC(O)-, -C(O)O-, -S-, -S(O)-, –S(O)2- or -Cy-; Cy represents independently for each occurrence phenyl, a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring or a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur; R5represents independently for each occurrence hydrogen, OR, C1-6 aliphatic, C1-6 haloaliphatic, or phenyl fused to a 5-6 membered saturated heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur; X is O or S; R1represents independently for each occurrence halogen, -CN, -OR, -NR2, -C(O)R, - C(O)OR, -C(O)NR2, C1-6alkyl, or C1-6haloalkyl; L is a bond or –N(R)-, -N(R)C(O)-, -N(R)C(O)N(R)-, -C(O)N(R)-, -N(R)S(O)2- , -S(O)2N(R)-, -O-, -C(O)-, -OC(O)-, -C(O)O-, -S-, -S(O)-, or –S(O)2-; RBis phenyl, a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring; a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur; or a 5-6 membered monocyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; wherein RBis substituted with q occurrences of R2; R2represents independently for each occurrence halogen, oxo, C1-6 aliphatic, phenyl, a 3- 7 membered saturated or partially unsaturated monocyclic carbocyclic ring; a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatomsindependently selected from nitrogen, oxygen, and sulfur; or a 5-6 membered monocyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; an 8-10 membered bicyclic heteroaryl ring having 1-5 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 5-10 membered saturated or partially unsaturated bridged bicyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 6-11 membered saturated or partially unsaturated spirocyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; or a 6-11 membered saturated or partially unsaturated bicyclic heterocyclic ring having 1-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur, or L1-R4; wherein R2is substituted with p occurrences of R6; L1represents independently for each occurrence a C1-2bivalent saturated straight or branched hydrocarbon chain wherein one methylene unit of the chain is optionally and independently replaced by –C(R)2-, –N(R)-, -N(R)C(O)-, -C(O)N(R)-, -N(R)S(O)2- , -S(O)2N(R)-, -O-, -C(O)-, -OC(O)-, -C(O)O-, -S-, -S(O)-, or –S(O)2-; R4represents independently for each occurrence a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring, or a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur; R6represents independently for each occurrence oxo, halogen, –CN, –NO2, –OR, -OCR3, -SR, -NR2, -S(O)2R, -S(O)2NR2, -S(O)R, -S(O)NR2, -C(R)2OR, -C(O)R, -C(O)OR, – C(O)NR2, -C(O)N(R)OR, -OC(O)R, -OC(O)NR2, - N(R)C(O)OR, -N(R)C(O)R, -N(R)C(O)NR2, -N(R)C(NR)NR2, –N(R)NR2, -N(R)S(O)2NR2, –N(R)S(O)2R, –N=S(O)R2, –S(NR)(O)R, –N(R)S(O)R, –N(R)CN, or optionally substituted phenyl; each R is independently hydrogen, -CN, halogen, or an optionally substituted group selected from C1-6 aliphatic; phenyl; naphthalenyl; a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring; a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 5-6 membered monocyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; an 8-10 membered bicyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, andsulfur; a 7-12 membered saturated or partially unsaturated bicyclic heterocyclic ring having 1 - 4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 5-8 membered saturated or partially unsaturated bridged bicyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 6-10 membered saturated or partially unsaturated spirocyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 6-11 membered saturated or partially unsaturated bicyclic carbocyclic ring having 1- 2 heteroatoms independently selected from nitrogen, oxygen, and sulfur; or: two R groups on the same nitrogen are taken together with the nitrogen to form an optionally substituted 4-7 membered monocyclic saturated, partially unsaturated, or heteroaryl ring having, in addition to the nitrogen, 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; an 8-10 membered bicyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 7-12 membered saturated or partially unsaturated bicyclic heterocyclic ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; m is 0, 1, 2, 3, or 4; n is 0, 1, 2, 3, 4, or 5; p is 0, 1, 2, 3, 4, or 5; and q is 0, 1, 2, 3, 4, or 5.

[0013] Further disclosed herein are novel compounds that modulate c-kit kinase and methods of using the same to treat c-kit kinase associated diseases, wherein the compound is of Formula II:or a pharmaceutically acceptable salt thereof; wherein each of RA, X, R1, and m are as defined above and described herein for Formula I.

[0014] Further disclosed herein are novel compounds that modulate c-kit kinase and methods of using the same to treat c-kit kinase associated diseases, wherein the compound is of Formula II:(II-l) or a pharmaceutically acceptable salt thereof; wherein each of RA, X, R1, and m are as defined above and described herein for Formula 1-1.

[0015] The practice of the present invention employs, unless otherwise indicated, conventional techniques of organic chemistry, pharmacology, molecular biology (including recombinant techniques), cell biology, biochemistry, and immunology. Such techniques are explained in the literature, such as in “Comprehensive Organic Synthesis” (B.M. Trost & I. Fleming, eds., 1991- 1992); “Handbook of experimental immunology” (D.M. Weir & C.C. Blackwell, eds ); “Current protocols in molecular biology” (F.M. Ausubel et al., eds., 1987, and periodic updates); and “Current protocols in immunology” (J.E. Coligan et al., eds., 1991), each of which is herein incorporated by reference in its entirety.

[0016] Various aspects of the invention are set forth below in sections; however, aspects of the invention described in one particular section are not to be limited to any particular section. Further, when a variable is not accompanied by a definition, the previous definition of the variable controls.Definitions

[0017] Compounds of the present invention include those described generally herein, and are further illustrated by the classes, subclasses, and species disclosed herein. As used herein, the following definitions shall apply unless otherwise indicated. These definitions apply regardless of whether a term is used by itself or in combination with other terms, unless otherwise indicated. Hence, the definition of “alkyl” applies to “alkyl” as well as the “alkyl” portions of “-O-alkyl” etc. For purposes of this invention, the chemical elements are identified in accordance with the Periodic Table of the Elements, CAS version, Handbook of Chemistry and Physics, 75thEd. Additionally, general principles of organic chemistry are described in “Organic Chemistry”, Thomas Sorrell, University Science Books, Sausalito: 1999, and “March’s Advanced Organic Chemistry”, 5thEd., Ed.: Smith, M.B. and March, J., John Wiley & Sons, New York: 2001, the entire contents of which are hereby incorporated by reference.

[0018] The term “aliphatic” or “aliphatic group”, as used herein, means a straight-chain (i.e., unbranched) or branched, substituted or unsubstituted hydrocarbon chain that is completely saturated or that contains one or more units of unsaturation, or a monocyclic hydrocarbon or bicyclic hydrocarbon that is completely saturated or that contains one or more units of unsaturation, but which is not aromatic (also referred to herein as “cycloaliphatic”), that has a single point of attachment to the rest of the molecule. Unless otherwise specified, aliphatic groups contain 1-6 aliphatic carbon atoms. In some embodiments, aliphatic groups contain 1-5 aliphatic carbon atoms. In other embodiments, aliphatic groups contain 1-4 aliphatic carbon atoms. In still other embodiments, aliphatic groups contain 1-3 aliphatic carbon atoms, and in yet other embodiments, aliphatic groups contain 1-2 aliphatic carbon atoms. In some embodiments, “cycloaliphatic” refers to a monocyclic C3-C6 hydrocarbon that is completely saturated or that contains one or more units of unsaturation, but which is not aromatic, that has a single point of attachment to the rest of the molecule. Suitable aliphatic groups include, but are not limited to, linear or branched, substituted or unsubstituted alkyl, alkenyl, alkynyl groups and hybrids thereof such as (cycloalkyl)alkyl, (cycloalkenyl)alkyl or (cycloalkyl)alkenyl.

[0019] As used herein, the term “bicyclic ring” or “bicyclic ring system” refers to any bicyclic ring system, i.e. carbocyclic or heterocyclic, saturated or having one or more units of unsaturation, having one or more atoms in common between the two rings of the ring system. Thus, the term includes any permissible ring fusion, such as ortho-fused or spirocyclic. As used herein, the term “heterobicyclic” is a subset of “bicyclic” that requires that one or more heteroatoms are present in one or both rings of the bicycle. Such heteroatoms may be present at ring junctions and are optionally substituted, and may be selected from nitrogen (including N-oxides), oxygen, sulfur (including oxidized forms such as sulfones and sulfonates), phosphorus (including oxidized forms such as phosphates), boron, etc. In some embodiments, a bicyclic group has 7-12 ring members and 0-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur. As used herein, the term “bridged bicyclic” refers to any bicyclic ring system, i.e. carbocyclic or heterocyclic, saturated or partially unsaturated, having at least one bridge. As defined by IUPAC, a “bridge” is an unbranched chain of atoms or an atom or a valence bond connecting two bridgeheads, where a “bridgehead” is any skeletal atom of the ring system which is bonded to three or more skeletal atoms (excluding hydrogen). In some embodiments, a bridged bicyclic group has 7-12 ring members and 0-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur. Suchbridged bicyclic groups are well known in the art and include those groups set forth below where each group is attached to the rest of the molecule at any substitutable carbon or nitrogen atom. Unless otherwise specified, a bridged bicyclic group is optionally substituted with one or more substituents as set forth for aliphatic groups. Additionally or alternatively, any substitutable nitrogen of a bridged bicyclic group is optionally substituted. Exemplary bicyclic rings include:

[0021] The term “lower alkyl” refers to a C1-4 straight or branched alkyl group, Exemplary lower alkyl groups are methyl, ethyl, propyl, isopropyl, butyl, isobutyl, and tert-butyl.

[0022] The term “lower haloalkyl” refers to a C1-4 straight or branched alkyl group that is substituted with one or more halogen atoms.

[0023] The term “heteroatom” means one or more of oxygen, sulfur, nitrogen, phosphorus, or silicon (including, any oxidized form of nitrogen, sulfur, phosphorus, or silicon; the quaternized form of any basic nitrogen or; a substitutable nitrogen of a heterocyclic ring, for example N (as in 3,4-dihydro-2 / f-pyrrolyl), NH (as in pyrrolidinyl) or NR+(as in N-substituted pyrrolidinyl)).

[0024] The term “unsaturated,” as used herein, means that a moiety has one or more units of unsaturation.

[0025] As used herein, the term “bivalent Ci-8 (or Ci-e) saturated or unsaturated, straight or branched, hydrocarbon chain”, refers to bivalent alkylene, alkenylene, and alkynylene chains that are straight or branched as defined herein.

[0026] The term “alkylene” refers to a bivalent alkyl group. An “alkylene chain” is a polymethylene group, i.e., -(CH2)n- wherein n is a positive integer, preferably from 1 to 6, from 1 to 4, from 1 to 3, from 1 to 2, or from 2 to 3. A substituted alkylene chain is a polymethylene group in which one or more methylene hydrogen atoms are replaced with a substituent. Suitable substituents include those described below for a substituted aliphatic group.

[0027] The term “-(Co alkylene)-“ refers to a bond. Accordingly, the term “-(C0-3 alkylene)-” encompasses a bond (i.e., Co) and a -(C1.3 alkylene)- group.

[0028] The term “alkenylene” refers to a bivalent alkenyl group. A substituted alkenylene chain is a polymethylene group containing at least one double bond in which one or more hydrogen atoms are replaced with a substituent. Suitable substituents include those described below for a substituted aliphatic group.

[0029] The term “halogen” means F, Cl, Br, or I.

[0030] The term “aryl” used alone or as part of a larger moiety as in “aralkyl,” “aralkoxy,” or “aryloxyalkyl,” refers to monocyclic or bicyclic ring systems having a total of five to fourteen ring members, wherein at least one ring in the system is aromatic and wherein each ring in the system contains 3 to 7 ring members. The term “aryl” may be used interchangeably with the term “aryl ring.” In certain embodiments of the present invention, “aryl” refers to an aromatic ring system which includes, but not limited to, phenyl, biphenyl, naphthyl, anthracyl and the like, which maybear one or more substituents. Also included within the scope of the term “aryl,” as it is used herein, is a group in which an aromatic ring is fused to one or more non-aromatic rings, such as indanyl, phthalimidyl, naphthimidyl, phenanthridinyl, or tetrahydronaphthyl, and the like. The term “phenylene” refers to a multivalent phenyl group having the appropriate number of open valences to account for groups attached to it. For example, “phenylene” is a bivalent phenyl grouparyl group.

[0031] The terms “heteroaryl” and “heteroar-,” used alone or as part of a larger moiety, e.g., “heteroaralkyl,” or “heteroaralkoxy,” refer to groups having 5 to 10 ring atoms, preferably 5, 6, or 9 ring atoms; having 6, 10, or 14 > electrons shared in a cyclic array; and having, in addition to carbon atoms, from one to five heteroatoms. The term “heteroatom” refers to nitrogen, oxygen, or sulfur, and includes any oxidized form of nitrogen or sulfur, and any quaternized form of a basic nitrogen. Heteroaryl groups include, without limitation, thienyl, furanyl, pyrrolyl, imidazolyl, pyrazolyl, triazolyl, tetrazolyl, oxazolyl, isoxazolyl, oxadiazolyl, thiazolyl, isothiazolyl, thiadiazolyl, pyridyl, pyridazinyl, pyrimidinyl, pyrazinyl, indolizinyl, purinyl, naphthyridinyl, and pteridinyl. The terms “heteroaryl” and “heteroar-”, as used herein, also include groups in which a heteroaromatic ring is fused to one or more aryl, cycloaliphatic, or heterocyclyl rings, where unless otherwise specified, the radical or point of attachment is on the heteroaromatic ring or on one of the rings to which the heteroaromatic ring is fused. Nonlimiting examples include indolyl, isoindolyl, benzothienyl, benzofuranyl, dibenzofuranyl, indazolyl, benzimidazolyl, benzthiazolyl, quinolyl, isoquinolyl, cinnolinyl, phthalazinyl, quinazolinyl, quinoxalinyl, 4 / / quinolizinyl, carbazolyl, acridinyl, phenazinyl, phenothiazinyl, phenoxazinyl, tetrahydroquinolinyl, and tetrahydroisoquinolinyl. A heteroaryl group may be mono- or bicyclic. The term “heteroaryl” may be used interchangeably with the terms “heteroaryl ring,” “heteroaryl group,” or “heteroaromatic,” any of which terms include rings that are optionally substituted. The term “heteroaralkyl” refers to an alkyl group substituted by a heteroaryl, wherein the alkyl and heteroaryl portions independently are optionally substituted.

[0032] The term “heteroarylene” refers to a multivalent heteroaryl group having the appropriate number of open valences to account for groups attached to it. For example, “heteroarylene” is a bivalent heteroaryl group when it has two groups attached to it; “heteroarylene” is a trivalent heteroaryl group when it has three groups attached to it. The term “pyridinylene” refers to a multivalent pyridine radical having the appropriate number of open valences to account for groups attached to it. For example, “pyridinylene” is a bivalent pyridine radical when it has two groups

[0033] As used herein, the terms “heterocycle,” “heterocyclyl,” “heterocyclic radical,” and “heterocyclic ring” are used interchangeably and refer to a stable 5- to 7-membered monocyclic or 7-10-membered bicyclic heterocyclic moiety that is either saturated or partially unsaturated, and having, in addition to carbon atoms, one or more, preferably one to four, heteroatoms, as defined above. When used in reference to a ring atom of a heterocycle, the term "nitrogen" includes a substituted nitrogen. As an example, in a saturated or partially unsaturated ring having 0-3 heteroatoms selected from oxygen, sulfur or nitrogen, the nitrogen may be N (as in 3,4-dihydro- 2 / 7 pyrrolyl), NH (as in pyrrolidinyl), or+NR (as in A substituted pyrrolidinyl).

[0034] A heterocyclic ring can be attached to its pendant group at any heteroatom or carbon atom that results in a stable structure and any of the ring atoms can be optionally substituted. Examples of such saturated or partially unsaturated heterocyclic radicals include, without limitation, tetrahydrofuranyl, tetrahydrothiophenyl pyrrolidinyl, piperidinyl, pyrrolinyl, tetrahydroquinolinyl, tetrahydroisoquinolinyl, decahydroquinolinyl, oxazolidinyl, piperazinyl, dioxanyl, dioxolanyl, diazepinyl, oxazepinyl, thiazepinyl, morpholinyl, 2-oxa-6- azaspiro[3.3]heptane, and quinuclidinyl. The terms “heterocycle,” “heterocyclyl,” “heterocyclyl ring,” “heterocyclic group,” “heterocyclic moiety,” and “heterocyclic radical,” are used interchangeably herein, and also include groups in which a heterocyclyl ring is fused to one or more aryl, heteroaryl, or cycloaliphatic rings, such as indolinyl, 3 / 7-indolyl, chromanyl, phenanthridinyl, or tetrahydroquinolinyl. A heterocyclyl group may be mono- or bicyclic. The term “heterocyclyl alkyl” refers to an alkyl group substituted by a heterocyclyl, wherein the alkyland heterocyclyl portions independently are optionally substituted. The term “oxo-heterocyclyl” refers to a heterocyclyl substituted by an oxo group. The term “heterocyclylene” refers to a multivalent heterocyclyl group having the appropriate number of open valences to account for groups attached to it. For example, “heterocyclylene” is a bivalent heterocyclyl group when it has two groups attached to it; “heterocyclylene” is a trivalent heterocyclyl group when it has three groups attached to it.

[0035] As used herein, the term “partially unsaturated” refers to a ring moiety that includes at least one double or triple bond. The term “partially unsaturated” is intended to encompass rings having multiple sites of unsaturation, but is not intended to include aryl or heteroaryl moieties, as herein defined.

[0036] As described herein, compounds of the invention may contain “optionally substituted” moieties. In general, the term “substituted,” whether preceded by the term “optionally” or not, means that one or more hydrogens of the designated moiety are replaced with a suitable substituent. Unless otherwise indicated, an “optionally substituted” group may have a suitable substituent at each substitutable position of the group, and when more than one position in any given structure may be substituted with more than one substituent selected from a specified group, the substituent may be either the same or different at every position. Combinations of substituents envisioned by this invention are preferably those that result in the formation of stable or chemically feasible compounds. The term “stable,” as used herein, refers to compounds that are not substantially altered when subjected to conditions to allow for their production, detection, and, in certain embodiments, their recovery, purification, and use for one or more of the purposes disclosed herein.

[0037] Each optional substituent on a substitutable carbon is a monovalent substituent independently selected from halogen; –(CH2)0–4R ^; –(CH2)0–4OR ^; -O(CH2)0-4Ro, –O–(CH2)0–4C(O)OR°; –(CH2)0–4CH(OR ^)2; –(CH2)0–4SR ^; –(CH2)0–4Ph, which may be substituted with R°; –(CH2)0–4O(CH2)0–1Ph which may be substituted with R°; –CH=CHPh, which may be substituted with R°; –(CH2)0–4O(CH2)0–1-pyridyl which may be substituted with R°; –NO2; –CN; – N3; -(CH2)0–4N(R ^)2; –(CH2)0–4N(R ^)C(O)R ^; –N(R ^)C(S)R ^; –(CH2)0–4N(R ^)C(O)NR ^2; -N(R ^)C(S)NR ^2; –(CH2)0–4N(R ^)C(O)OR ^; –N(R ^)N(R ^)C(O)R ^; -N(R ^)N(R ^)C(O)NR ^2; -N(R ^)N(R ^)C(O)OR ^; –(CH2)0–4C(O)R ^; –C(S)R ^; –(CH2)0–4C(O)OR ^; –(CH2)0–4C(O)SR ^;-(CH2)o4C(O)OSiR°3; -(CH2)O4OC(O)R°; -OC(0)(CH2)O^SR- SC(S)SR°; -(CH2)O 4SC(O)RO; -(CH2)O4C(O)NRO2; -C(S)NRO2; -C(S)SR°; -SC(S)SR°, -(CH2)O4OC(O)NRO2; -C(O)N(OR°)R°; -C(O)C(O)R°; -C(O)CH2C(O)R°; -C(NOR°)R°; -(CH2)0 4SSR°; -(CH2)04S(O)2R°; -(CH2)O 4S(0)20RO; -(CH2)O-4OS(0)2R°; -S(O)2NRO2; -S(O)(NR°)R°; - S(O)2N=C(NR°2)2; -(CH2)O 4S(O)RO; -N(RO)S(O)2NR°2; -N(RO)S(O)2R°; -N(OR°)R°; - C(NH)NR°2; -P(O)2RO; -P(0)RO2; -0P(0)RO2; -0P(0)(0RO)2; SiR°3; -(Ci4straight or branched alkylene)O-N(R°)2; or -(Ci-4straight or branched alkylene)C(O)O-N(R°)2.

[0038] Each R° is independently hydrogen, Ci-6 aliphatic, -CH2Ph, -0(CH2)o iPh, -CH2-(5-6 membered heteroaryl ring), or a 5-6-membered saturated, partially unsaturated, or aryl ring having 0-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, or, notwithstanding the definition above, two independent occurrences of R°, taken together with their intervening atom(s), form a 3-12-membered saturated, partially unsaturated, or aryl mono- or bicyclic ring having 0- 4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, which may be substituted by a divalent substituent on a saturated carbon atom of R° selected from =0 and =S; or each R° is optionally substituted with a monovalent substituent independently selected from halogen, - (CH2)0 2R*, -(haloR*), -(CH2)0 2OH, -(CH2)o-2OR*, -(CH2)o2CH(OR’)2; -O(haloR’), -CN, -N3, -(CH2)0 2C(O)R*, -(CH2)O 2C(O)OH, -(CH2)O 2C(O)OR*, -(CH2)O 2SR*, -(CH2)O 2SH, -(CH2)O2NH2, -(CH2)O2NHR*, -(CH2)O2NR*2, -NO2, -SiR*3, -OSiR*3, -C(O)SR* -(Ci^t straight or branched alkylene)C(O)OR’, or -SSR*.

[0039] Each R* is independently selected from Ci-4aliphatic, -CH2Ph, -0(CH2)o-iPh, or a 5- 6-membered saturated, partially unsaturated, or aryl ring having 0-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, and wherein each R* is unsubstituted or where preceded by halo is substituted only with one or more halogens; or wherein an optional substituent on a saturated carbon is a divalent substituent independently selected from =0, =S, =NNR*2, =NNHC(O)R*, =NNHC(O)OR*, =NNHS(O)2R*, =NR*, =N0R*, -O(C(R*2))2 3O- or - S(C(R*2))2-3S-, or a divalent substituent bound to vicinal substitutable carbons of an “optionally substituted” group is -O(CR*2)2 3O-, wherein each independent occurrence of R* is selected from hydrogen, Ci-6 aliphatic or an unsubstituted 5-6-membered saturated, partially unsaturated, or aryl ring having 0-4 heteroatoms independently selected from nitrogen, oxygen, or sulfur.

[0040] When R*is C1–6aliphatic, R*is optionally substituted with halogen, – R^, -(haloR^), -OH, –OR^, –O(haloR^), –CN, –C(O)OH, –C(O)OR^, –NH2, –NHR^, –NR^2, or – NO2, wherein each R^is independently selected from C1–4 aliphatic, –CH2Ph, –O(CH2)0–1Ph, or a 5–6–membered saturated, partially unsaturated, or aryl ring having 0–4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, and wherein each R^is unsubstituted or where preceded by halo is substituted only with one or more halogens.

[0041] An optional substituent on a substitutable nitrogen is independently –R†, –NR†2, – C(O)R†, –C(O)OR†, –C(O)C(O)R†, –C(O)CH2C(O)R†, -S(O)2R†, -S(O)2NR†2, –C(S)NR†2, – C(NH)NR†2, or –N(R†)S(O)2R†; wherein each R†is independently hydrogen, C1–6 aliphatic, unsubstituted –OPh, or an unsubstituted 5–6–membered saturated, partially unsaturated, or aryl ring having 0–4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, or, two independent occurrences of R†, taken together with their intervening atom(s) form an unsubstituted 3–12–membered saturated, partially unsaturated, or aryl mono– or bicyclic ring having 0–4 heteroatoms independently selected from nitrogen, oxygen, or sulfur; wherein when R†is C1–6aliphatic, R†is optionally substituted with halogen, –R^, -(haloR^), -OH, –OR^, –O(haloR^), – CN, –C(O)OH, –C(O)OR^, –NH2, –NHR^, –NR^2, or –NO2, wherein each R^is independently selected from C1–4aliphatic, –CH2Ph, –O(CH2)0–1Ph, or a 5–6–membered saturated, partially unsaturated, or aryl ring having 0–4 heteroatoms independently selected from nitrogen, oxygen, or sulfur, and wherein each R^is unsubstituted or where preceded by halo is substituted only with one or more halogens.

[0042] As used herein, the term "pharmaceutically acceptable salt" refers to those salts which are, within the scope of sound medical judgment, suitable for use in contact with the tissues of humans and lower animals without undue toxicity, irritation, allergic response and the like, and are commensurate with a reasonable benefit / risk ratio. Pharmaceutically acceptable salts are well known in the art. For example, S. M. Berge et al., describe pharmaceutically acceptable salts in detail in J. Pharmaceutical Sciences, 1977, 66, 1–19, incorporated herein by reference. Pharmaceutically acceptable salts of the compounds of this invention include those derived from suitable inorganic and organic acids and bases. Examples of pharmaceutically acceptable, nontoxic acid addition salts are salts of an amino group formed with inorganic acids such as hydrochloric acid, hydrobromic acid, phosphoric acid, sulfuric acid and perchloric acid or with organic acids such as acetic acid, oxalic acid, maleic acid, tartaric acid, citric acid, succinic acidor malonic acid or by using other methods used in the art such as ion exchange. Other pharmaceutically acceptable salts include adipate, alginate, ascorbate, aspartate, benzenesulfonate, benzoate, bisulfate, borate, butyrate, camphorate, camphor sulfonate, citrate, cyclopentanepropionate, digluconate, dodecyl sulfate, ethanesulfonate, formate, fumarate, glucoheptonate, glycerophosphate, gluconate, hemisulfate, heptanoate, hexanoate, hydroiodide, 2- hydroxy-ethanesulfonate, lactobionate, lactate, laurate, lauryl sulfate, malate, maleate, malonate, methanesulfonate, 2-naphthalenesulfonate, nicotinate, nitrate, oleate, oxalate, palmitate, pamoate, pectinate, persulfate, 3-phenylpropionate, phosphate, pivalate, propionate, stearate, succinate, sulfate, tartrate, thiocyanate, p-toluenesulfonate, undecanoate, valerate salts, and the like.

[0043] Further, acids which are generally considered suitable for the formation of pharmaceutically useful salts from basic pharmaceutical compounds are discussed, for example, by P. Stahl et al., Camille G. (eds.) Handbook of Pharmaceutical Salts. Properties, Selection and Use. (2002) Zurich: Wiley-VCH; S. Berge et al. , Journal of Pharmaceutical Sciences (1977) 66(1) 1-19; P. Gould, International J. of Pharmaceutics (1986) 33 201-217; Anderson et al, The Practice of Medicinal Chemistry (1996), Academic Press, New York; and in The Orange Book (Food & Drug Administration, Washington, D.C. on their website). These disclosures are incorporated herein by reference.

[0044] Salts derived from appropriate bases include alkali metal, alkaline earth metal, ammonium and N+(Ci^alkyl)4 salts. Representative alkali or alkaline earth metal salts include sodium, lithium, potassium, calcium, magnesium, and the like. Further pharmaceutically acceptable salts include, when appropriate, nontoxic ammonium, quaternary ammonium, and amine cations formed using counterions such as halide, hydroxide, carboxylate, sulfate, phosphate, nitrate, lower alkyl sulfonate and aryl sulfonate.

[0045] Unless otherwise stated, structures depicted herein are also meant to include all isomeric (e.g., enantiomeric, diastereomeric, and geometric (or conformational)) forms of the structure; for example, the R and S configurations for each asymmetric center, Z and E double bond isomers, and Z and E conformational isomers. Therefore, single stereochemical isomers as well as enantiomeric, diastereomeric, and geometric (or conformational) mixtures of the present compounds are within the scope of the invention. Unless otherwise stated, all tautomeric forms of the compounds of the invention are within the scope of the invention. Additionally, unlessotherwise stated, structures depicted herein are also meant to include compounds that differ only in the presence of one or more isotopically enriched atoms. For example, compounds having the present structures including the replacement of hydrogen by deuterium or tritium, or the replacement of a carbon by a13C- or14C-enriched carbon are within the scope of this invention. Such compounds are useful, for example, as analytical tools, as probes in biological assays, or as therapeutic agents in accordance with the present invention.

[0046] Diastereomeric mixtures can be separated into their individual diastereomers on the basis of their physical chemical differences by methods known to those skilled in the art, such as, for example, by chromatography and / or fractional crystallization. Enantiomers can be separated by converting the enantiomeric mixture into a diastereomeric mixture by reaction with an appropriate optically active compound (e.g., chiral auxiliary such as a chiral alcohol or Mosher’s acid chloride), separating the diastereomers and converting (e.g., hydrolyzing) the individual diastereomers to the corresponding pure enantiomers. Alternatively, a particular enantiomer of a compound of the present invention may be prepared by asymmetric synthesis. Still further, where the molecule contains a basic functional group (such as amino) or an acidic functional group (such as carboxylic acid) diastereomeric salts are formed with an appropriate optically-active acid or base, followed by resolution of the diastereomers thus formed by fractional crystallization or chromatographic means known in the art, and subsequent recovery of the pure enantiomers.

[0047] Individual stereoisomers of the compounds of the invention may, for example, be substantially free of other isomers, or may be admixed, for example, as racemates or with all other, or other selected, stereoisomers. Chiral center(s) in a compound of the present invention can have the S or R configuration as defined by the IUPAC 1974 Recommendations. Further, to the extent a compound described herein may exist as an atropisomer (e.g., substituted biaryls), all forms of such atropisomers are considered part of this invention.

[0048] Chemical names, common names, and chemical structures may be used interchangeably to describe the same structure. If a chemical compound is referred to using both a chemical structure and a chemical name, and an ambiguity exists between the structure and the name, the structure predominates. It should also be noted that any carbon as well as heteroatom with unsatisfied valences in the text, schemes, examples and tables herein is assumed to have the sufficient number of hydrogen atom(s) to satisfy the valences.

[0049] The terms “a” and “an” as used herein mean “one or more” and include the plural unless the context is inappropriate.

[0050] The term “alkyl” refers to a saturated straight or branched hydrocarbon, such as a straight or branched group of 1-12, 1-10, or 1-6 carbon atoms, referred to herein as C1-C12 alkyl, C1-C10 alkyl, and Ci-Ce alkyl, respectively. Exemplary alkyl groups include, but are not limited to, methyl, ethyl, propyl, isopropyl, 2-methyl-l -propyl, 2-methyl-2-propyl, 2-methyl-l -butyl, 3- methyl-1 -butyl, 2-methyl-3 -butyl, 2,2-dimethyl-l -propyl, 2-methyl-l -pentyl, 3 -methyl -1 -pentyl, 4-methyl-l -pentyl, 2-methyl-2-pentyl, 3-methyl-2-pentyl, 4-methyl-2-pentyl, 2,2-dimethyl-l- butyl, 3,3-dimethyl-l -butyl, 2-ethyl-l -butyl, butyl, isobutyl, t-butyl, pentyl, isopentyl, neopentyl, hexyl, heptyl, octyl, etc.

[0051] The term “cycloalkyl” refers to a monovalent saturated cyclic, bicyclic, or bridged cyclic (e.g., adamantyl) hydrocarbon group of 3-12, 3-8, 4-8, or 4-6 carbons, referred to herein, e.g., as “C3-C6 cycloalkyl,” derived from a cycloalkane. Exemplary cycloalkyl groups include cyclohexyl, cyclopentyl, cyclobutyl, and cyclopropyl. The term “cycloalkylene” refers to a bivalent cycloalkyl group.

[0052] The term “haloalkyl” refers to an alkyl group that is substituted with at least one halogen. Exemplary haloalkyl groups include -CH2F, -CHF2, -CF3, -CH2CF3, -CF2CF3, and the like. The term “haloalkylene” refers to a bivalent haloalkyl group.

[0053] The term “hydroxyalkyl” refers to an alkyl group that is substituted with at least one hydroxyl. Exemplary hydroxyalkyl groups include -CH2CH2OH, -C(H)(OH)CH3, -CH2C(H)(OH)CH2CH2OH, and the like.

[0054] The terms “alkenyl” and “alkynyl” are art-recognized and refer to unsaturated aliphatic groups analogous in length and possible substitution to the alkyls described above, but that contain at least one double or triple bond respectively.

[0055] The term “carbocyclylene” refers to a multivalent carbocyclyl group having the appropriate number of open valences to account for groups attached to it. For example, “carbocyclylene” is a bivalent carbocyclyl group when it has two groups attached to it; “carbocyclylene” is a trivalent carbocyclyl group when it has three groups attached to it.

[0056] The terms “alkoxyl” or “alkoxy” are art-recognized and refer to an alkyl group, as defined above, having an oxygen radical attached thereto. Representative alkoxyl groups include methoxy, ethoxy, propyloxy, terZ-butoxy and the like. The term “haloalkoxyl” refers to an alkoxyl group that is substituted with at least one halogen. Exemplary haloalkoxyl groups include - OCH2F, -OCHF2, -OCF3, -OCH2CF3, -OCF2CF3, and the like. The term “hydroxyalkoxyl” refers to an alkoxyl group that is substituted with at least one hydroxyl. Exemplary hydroxyalkoxyl groups include -OCH2CH2OH, -OCH2C(H)(OH)CH2CH2OH, and the like. The term “alkoxyl ene” refers to a bivalent alkoxyl group.

[0057] The term “oxo” is art-recognized and refers to a “=O” substituent. For example, a cyclopentane susbsituted with an oxo group is cyclopentanone.

[0058] The symbol “•«««” indicates a point of attachment.

[0059] When a chemical structure containing a ring is depicted with a substituent having a bond that crosses a ring bond, the substituent may be attached at any available position on the ring. For example, the chemical structureencompassesIn the context of a polycyclic fused ring, when a chemical structure containing a polycyclic fused ring is depicted with one or more substituent(s) having a bond that crosses multiple rings, the one or more substituent(s) may be independently attached to any of the rings crossed by the bond. To illustrate, the chemical structureencompasses, for example,

[0060] When any substituent or variable occurs more than one time in any constituent or the compound of the invention, its definition on each occurrence is independent of its definition at every other occurrence, unless otherwise indicated.

[0061] One or more compounds of the invention may exist in unsolvated as well as solvated forms with pharmaceutically acceptable solvents such as water, ethanol, and the like, and it is intended that the invention embrace both solvated and unsolvated forms. “Solvate” means a physical association of a compound of this invention with one or more solvent molecules. This physical association involves varying degrees of ionic and covalent bonding, including hydrogen bonding. In certain instances the solvate will be capable of isolation, for example when one or more solvent molecules are incorporated in the crystal lattice of the crystalline solid. “Solvate” encompasses both solution-phase and isolatable solvates. Non-limiting examples of suitable solvates include ethanolates, methanolates, and the like. “Hydrate” is a solvate wherein the solvent molecule is H2O.

[0062] As used herein, the terms “subject” and “patient” are used interchangeably and refer to organisms to be treated by the methods of the present invention. Such organisms preferably include, but are not limited to, mammals (e.g., murines, simians, equines, bovines, porcines, canines, felines, and the like), and, most preferably, includes humans.

[0063] The term “IC50” is art-recognized and refers to the concentration of a compound that is required to achieve 50% inhibition of the target. The potency of an inhibitor is usually defined by its IC50 value. The lower the IC50 value the greater the potency of the antagonist and the lower the concentration that is required to inhibit the maximum biological response. In certain embodiments, an inhibitor has an IC50 and / or binding constant of less than about 100 μM, less than about 50 μM, less than about 1 μM, less than about 500 nM, less than about 100 nM, less than about 10 nM, or less than about 1 nM.

[0064] As used herein, the terms “inhibitor” or “c-kit inhibitor” are defined as a compound that binds to and / or inhibits c-kit kinase with measurable affinity. In some embodiments, inhibition in the presence of the inhibitor is observed in a dose-dependent manner. In some embodiments, the measured signal (e.g., signaling activity or biological activity) is at least about 5%, at least about 10%, at least about 15%, at least about 20%, at least about 25%, at least about 30%, at least about35%, at least about 40%, at least about 45%, at least about 50%, at least about 55%, at least about60%, at least about 65%, at least about 70%, at least about 75%, at least about 80%, at least about85%, at least about 90%, at least about 95%, at least about 96%, at least about 97%, at least about98%, at least about 99%, or at least about 100% lower than the signal measured with a negative control under comparable conditions.

[0065] The terms “measurable affinity” and “measurably inhibit,” as used herein, means a measurable change or inhibition in c-kit kinase activity between a sample comprising a compound of the present invention, or composition thereof an equivalent sample comprising c-kit kinase, in the absence of said compound, or composition thereof.

[0066] As used herein, the term “effective amount” refers to the amount of a compound sufficient to effect beneficial or desired results (e.g., a therapeutic, ameliorative, inhibitory, or preventative result). An effective amount can be administered in one or more administrations, applications, or dosages and is not intended to be limited to a particular formulation or administration route.

[0067] As used herein, the term “treating” includes any effect, e.g., lessening, reducing, modulating, ameliorating or eliminating, that results in the improvement of the condition, disease, disorder, and the like, or ameliorating a symptom thereof. In some embodiments, treatment can be administered after one or more symptoms have developed. In other embodiments, treatment can be administered in the absence of symptoms. For example, treatment can be administered to a susceptible individual prior to the onset of symptoms (e.g., in light of a history of symptoms and / or in light of genetic or other susceptibility factors). Treatment can also be continued after symptoms have resolved, for example, to prevent or delay their recurrence.

[0068] As used herein, the term “pharmaceutical composition” refers to the combination of an active agent with a carrier, inert or active, making the composition especially suitable for diagnostic or therapeutic use in vivo or ex vivo.

[0069] As used herein, the term “pharmaceutically acceptable carrier” refers to any of the standard pharmaceutical carriers, such as a phosphate buffered saline solution, water, emulsions (e.g., such as an oil / water or water / oil emulsions), and various types of wetting agents. The compositions also can include stabilizers and preservatives. For examples of carriers, stabilizers and adjuvants, see e.g, Martin, Remington’s Pharmaceutical Sciences, 15th Ed., Mack Publ. Co., Easton, PA

[1975] ,

[0070] For therapeutic use, salts of the compounds of the present invention are contemplated as being pharmaceutically acceptable. However, salts of acids and bases that are non- pharmaceutically acceptable may also find use, for example, in the preparation or purification of a pharmaceutically acceptable compound.

[0071] In addition, when a compound of the invention contains both a basic moiety (such as, but not limited to, a pyridine or imidazole) and an acidic moiety (such as, but not limited to, a carboxylic acid) zwitterions (“inner salts”) may be formed. Such acidic and basic salts used within the scope of the invention are pharmaceutically acceptable (i.e., non-toxic, physiologically acceptable) salts. Such salts of the compounds of the invention may be formed, for example, by reacting a compound of the invention with an amount of acid or base, such as an equivalent amount, in a medium such as one in which the salt precipitates or in an aqueous medium followed by lyophilization.

[0072] Throughout the description, where compositions are described as having, including, or comprising specific components, or where processes and methods are described as having, including, or comprising specific steps, it is contemplated that, additionally, there are compositions of the present invention that consist essentially of, or consist of, the recited components, and that there are processes and methods according to the present invention that consist essentially of, or consist of, the recited processing steps.

[0073] As a general matter, compositions specifying a percentage are by weight unless otherwise specified.I. Compounds of the Present Disclosure

[0074] The present disclosure provides compounds and pharmaceutically acceptable salts thereof that may be used in pharmaceutical compositions and therapeutic methods described herein. Exemplary compounds are described in the following sections, along with exemplary procedures for making the compounds.Formula I:

[0075] In some embodiments, the present disclosure provides a compound represented by Formula (I):or a pharmaceutically acceptable salt thereof; wherein:RAis of either of the following structures:each of which is substituted by n occurrences of R3;R3represents independently for each occurrence oxo, halogen, -CN, -NO2, -OR, -OCR3, -SR, -NR2, -S(O)2R, -S(O)2NR2, -S(O)R, -S(O)NR2, -C(R)2OR, -C(O)R, -C(O)OR, - C(O)NR2, -C(O)N(R)OR, -OC(O)R, -OC(O)NR2,N(R)C(O)OR, -N(R)C(O)R, -N(R)C(O)NR2, -N(R)C(NR)NR2, -N(R)NR2, -N(R)S(O)2NR2, - N(R)S(O)2R, -N=S(O)R2, -S(NR)(O)R, -N(R)S(O)R, -N(R)CN, -L2-R5, or an optionally substituted group selected from C1-6 aliphatic, C1-6 haloaliphatic, phenyl, naphthalenyl, a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring; a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur; or a 5-6 membered monocyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; an 8-10 membered bicyclic heteroaryl ring having 1-5 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 5-8 membered saturated or partially unsaturated bridged bicyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 6-11 membered saturated or partially unsaturated spirocyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; or a 6-11 membered saturated or partially unsaturated bicyclic heterocyclic ring having 1-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; each of which is substituted with r instances of R; or:two R3groups on adjacent carbon atoms are taken together with the carbon atoms to which they attach to form an optionally substituted 4-7 membered saturated monocyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur, substituted with r instances of R;L2represents independently for each occurrence a Ci-6 bivalent saturated or unsaturated, straight or branched hydrocarbon chain wherein one, two, or three methylene units of the chain are optionally and independently replaced by -C(R)2-, -N(R)-, -N(R)C(O)-, - C(O)N(R)-, -N(R)S(O)2-, -S(O)2N(R)-, -O-, -C(O)-, -OC(O)-, -C(O)O-, -S-, -S(O)-, -S(O)2- or -Cy-;Cy represents independently for each occurrence phenyl, a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring or a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur;R3represents independently for each occurrence hydrogen, OR, Ci-6 aliphatic, Ci-6 haloaliphatic, or phenyl fused to a 5-6 membered saturated heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur;X is O or S;R1represents independently for each occurrence halogen, -CN, -OR, -NR2, -C(O)R, - C(O)OR, -C(O)NR2, CI-6 alkyl, or Ci-ehaloalkyl;L is a bond or -N(R)-, -N(R)C(O)-, -N(R)C(O)N(R)-, -C(O)N(R)-, -N(R)S(O)2-, -S(O)2N(R)-, -O-, -C(O)-, -OC(O)-, -C(O)O-, -S-, -S(O)-, or -S(O)2-;RBis phenyl, a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring; a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur; or a 5-6 membered monocyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; wherein RBis substituted with q occurrences of R2;R2represents independently for each occurrence halogen, oxo, Ci-6 aliphatic, phenyl, a 3- 7 membered saturated or partially unsaturated monocyclic carbocyclic ring; a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur; or a 5-6 membered monocyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, andsulfur; an 8-10 membered bicyclic heteroaryl ring having 1-5 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 5-10 membered saturated or partially unsaturated bridged bicyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 6-11 membered saturated or partially unsaturated spirocyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; or a 6-11 membered saturated or partially unsaturated bicyclic heterocyclic ring having 1-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur, or L'-R4; wherein R2is substituted with p occurrences of R6;L1represents independently for each occurrence a C1.2 bivalent saturated straight or branched hydrocarbon chain wherein one methylene unit of the chain is optionally and independently replaced by -C(R)2-, -N(R)-, -N(R)C(O)-, -C(O)N(R)-, -N(R)S(O)2- , -S(O)2N(R)-, -O-, -C(O)-, -OC(O)-, -C(O)O-, -S-, -S(O)-, or -S(O)2-;R4represents independently for each occurrence a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring, or a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur;R6represents independently for each occurrence oxo, halogen, -CN, -NO2, -OR, -OCRs, -SR, -NR2, -S(O)2R, -S(O)2NR2, -S(O)R, -S(O)NR2, -C(R)2OR, -C(O)R, -C(O)OR, - C(O)NR2, -C(O)N(R)OR, -OC(O)R, -OC(O)NR2, -N(R)C(O)OR, -N(R)C(O)R, -N(R)C(O)NR2, -N(R)C(NR)NR2, -N(R)NR2, -N(R)S(O)2NR2, -N(R)S(O)2R, -N=S(O)R2, -S(NR)(O)R, -N(R)S(O)R, -N(R)CN, or optionally substituted phenyl;R7is hydrogen or C1-6 alkyl; each R is independently hydrogen, -CN, halogen, or an optionally substituted group selected from Ci-6 aliphatic; C1-6 haloaliphatic; phenyl; naphthalenyl; a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring; a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 5-6 membered monocyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; an 8-10 membered bicyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 7-12 membered saturated or partially unsaturated bicyclic heterocyclic ringhaving 1 -4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 5-8 membered saturated or partially unsaturated bridged bicyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 6-10 membered saturated or partially unsaturated spirocyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 6-11 membered saturated or partially unsaturated bicyclic carbocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur; or: two R groups on the same nitrogen are taken together with the nitrogen to form an optionally substituted 4-7 membered monocyclic saturated, partially unsaturated, or heteroaryl ring having, in addition to the nitrogen, 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; an 8-10 membered bicyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 7-12 membered saturated or partially unsaturated bicyclic heterocyclic ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; m is 0 or 1; n is 0, 1, 2, 3, 4, or 5; p is 0, 1, 2, 3, 4, or 5; and q is 0, 1, 2, 3, 4, or 5.

[0076] In some embodiments, the present invention provides a compound represented byFormula II:or a pharmaceutically acceptable salt thereof; wherein each of RA, X, R1, and m are as defined above and described herein for Formula I.

[0077] The definitions of variables in Formula I or II above encompass multiple chemical groups. The application contemplates embodiments where, for example, (i) the definition of a variable is a single chemical group selected from those chemical groups set forth above, (ii) the definition of a variable is a collection of two or more of the chemical groups selected from thoseset forth above, and iii) the compound is defined by a combination of variables in which the variables are defined by (i) or (ii).

[0078] In certain embodiments, the compound is a compound of Formula I.

[0079] In certain embodiments, the compound is a compound of Formula II.

[0080] The description above describes multiple embodiments relating to compounds of Formula I and II. The patent application specifically contemplates all combinations of the embodiments.

[0081] It has been surprisingly discovered that certain compounds of the present invention do not significantly penetrate the brain or minimally penetrate the brain, wherein the extent of brain penetration is measured by measuring “Kp,” i.e., the ratio of compound concentration in the brain and blood (Cbrain / Cpiasma) as demonstrated by certain assays described herein in Example 30. In some such embodiments, a compound of the present invention is characterized as having a Kp (brain) of less than about 0.7, less than about 0.6, less than about 0.5, less than about 0.4, less than about 0.3, less than about 0.2, or less than about 0.1. In some embodiments, a compound of the present invention is characterized as having a Kp of less than about 0.7. In some embodiments, a compound of the present invention is characterized by having a Kp of less than about 0.6. In some embodiments, a compound of the present invention is characterized by having a Kpof less than about 0.5. In some embodiments, a compound of the present invention is characterized by having a Kpof less than about 0.4. In some embodiments, a compound of the present invention is characterized by having a Kp of less than about 0.3. In some embodiments, a compound of the present invention is characterized by having a Kp of less than about 0.2. In some embodiments, a compound of the present invention is characterized by having a Kp of less than about 0.1. In some embodiments, a compound of the present invention is characterized by having a Kp of less than about 0.09. In some embodiments, a compound of the present invention is characterized by having a Kp of less than about 0.08. In some embodiments, a compound of the present invention is characterized by having a Kp of less than about 0.05. In some embodiments, a compound of the present invention is characterized by having a Kp of less than about 0.04. In some embodiments, a compound of the present invention is characterized by having a Kp of less than about 0.03. In some embodiments, a compound of the present invention is characterized by having a Kp of less than about 0.02. In some embodiments, a compound of the present invention is characterized byhaving a Kpof less than about 0.01 . Various methods of assessing brain exposure are known to those of skill in the art and / or are described herein.

[0082] In some embodiments, for compounds with low Kpvalues, determination offrom the unbound compounds plasma, brain and testes concentrations also supports peripheral restriction of the compounds.

[0083] In some embodiments, it has been surprisingly discovered that compounds of the present invention are Breast Cancer Resistance Protein (BCRP) efflux substrates. The human breast cancer resistance protein (BCRP, gene symbol ABCG2) is an ATP -binding cassette (ABC) efflux transporter. Among normal human tissues, BCRP is highly expressed on the apical membranes of the placental syncytiotrophoblasts, the intestinal epithelium, the liver hepatocytes, the endothelial cells of brain microvessels, testis, and the renal proximal tubular cells, contributing to the absorption, distribution, and elimination of drugs and endogenous compounds as well as tissue protection against xenobiotic exposure. As a result, BCRP has now been recognized by the FDA to be one of the key drug transporters involved in clinically relevant drug disposition.

[0084] Various methods of assessing whether a compound is a BCRP efflux substrate are known to those of skill in the art and / or are described herein, for instance in Example 29. In some embodiments, a compound of the present invention exhibits an efflux ratio (ER) of about 1-fold, indicating substantially no efflux. In some embodiments, a compound of the present invention exhibits an efflux ratio (ER) of at least about 1.5-fold. In some embodiments, a compound of the present invention exhibits an efflux ratio (ER) of at least about 2.0-fold. In some embodiments, a compound of the present invention exhibits an efflux ratio (ER) of at least about 3.5-fold. In some embodiments, a compound of the present invention exhibits an efflux ratio (ER) of at least about 4.0-fold. In some embodiments, a compound of the present invention exhibits an efflux ratio (ER) of at least about 4.5-fold. In some embodiments, a compound of the present invention exhibits an efflux ratio (ER) of at least about 5-fold. In some embodiments, a compound of the present invention exhibits an efflux ratio (ER) of at least about 6-fold. In some embodiments, a compound of the present invention exhibits an efflux ratio (ER) of at least about 7-fold. In some embodiments, a compound of the present invention exhibits an efflux ratio (ER) of at least about 8-fold. In some embodiments, a compound of the present invention exhibits an efflux ratio (ER) of at least about 9-fold. In some embodiments, a compound of the present invention exhibits anefflux ratio (ER) of at least about 10-fold. In some embodiments, a compound of the present invention exhibits an efflux ratio (ER) of at least about 15-fold. In some embodiments, a compound of the present invention exhibits an efflux ratio (ER) of at least about 20-fold. In some embodiments, a compound of the present invention exhibits an efflux ratio (ER) of at least about 25-fold. In some embodiments, a compound of the present invention exhibits an efflux ratio (ER) of at least about 30-fold. In some embodiments, a compound of the present invention exhibits an efflux ratio (ER) of at least about 35-fold. In some embodiments, a compound of the present invention exhibits an efflux ratio (ER) of at least about 40-fold. In some embodiments, a compound of the present invention exhibits an efflux ratio (ER) of at least about 45-fold. In some embodiments, a compound of the present invention exhibits an efflux ratio (ER) of at least about 50-fold.

[0085] In some embodiments, it has been surprisingly discovered that certain compounds of the present invention do not significantly inhibit BCRP.

[0086] Various methods of assessing whether a compound is a BCRP inhibitor are known to those of skill in the art and / or are described herein, for instance in Example 33. In some embodiments, compounds of the present invention have a BCRP inhibition IC50 of about 400 nM, or about 500 nM, or about 600 nM, or about 700 nM, or about 800 nM, or about 900 nM. In some embodiments, compounds of the present invention have a BCRP inhibition IC50 of about ImM, about 2 mM, about 3mM, about 4 mM, about 5 mM, about 6 mM, about 7 mM, about 8 mM, about 9 mM, or about 10 mM. In some embodiments, compounds of the present invention have a BCRP inhibition IC50 of between about 500 nM and 10 mM. In some embodiments, compounds of the present invention have a BCRP inhibition IC50 of between about 500 nM and 5 mM. In some embodiments, compounds of the present invention have a BCRP inhibition IC50 of between about 500 nM and 1 mM. In some embodiments, compounds of the present invention have a BCRP inhibition IC50 of between about 1 mM and 10 mM. In some embodiments, compounds of the present invention have a BCRP inhibition IC50 of between about 1 mM and 5 mM. In some embodiments, compounds of the present invention have a BCRP inhibition IC50 of between about 5 mM and 10 mM. Exemplary compounds of the present invention are described further herein.

[0087] In some embodiments, it has been surprising discovered that compounds of the present invention are P-glycoprotein (PGP) efflux substrates. P-glycoprotein (PGP), an efflux membranetransporter, is also referred to in the art as multi-drug resistance protein 1 ((MDR1), permeability glycoprotein, P-gp, or Pgp, encoded by MDR1 / ABCB1 and belonging to the family of ATP- binding cassette transporters), and is widely distributed throughout the body and responsible for limiting cellular uptake and the distribution of xenobiotics and toxic substances. PGP is one of the most important transporters at the blood-brain barrier (BBB), where it is highly expressed in the vessel walls of the brain capillaries functioning as an efflux pump. PGP is also located throughout the human body in organs or tissues with an excretory and / or barrier function, such as the liver, kidney, placenta, and testes.

[0088] With respect to the placenta, PGP has been found to have a role in the regulation of drug disposition to the fetus and has been extensively studied. Expression of PGP in the placental trophoblast layer has been confirmed at the mRNA and protein levels in all phases of pregnancy. Several in vitro and in vivo studies have demonstrated functional activity of the transporter in matemo-fetal drug transport. PGP is able to actively pump drugs and other xenobiotics from trophoblast cells back to the maternal circulation, thus providing protection to the fetus.

[0089] In some embodiments, compounds of the present invention are efflux substrates of BRCP. In some embodiments, compounds of the present invention are efflux substrates of PGP. In some embodiments, compounds of the present invention are efflux substrates of one or both of BCRP and PGP.

[0090] It has been further surprisingly discovered that certain compounds of the present invention afford lower testes exposure, which may lead to better spermatogonia survival and / or spermatogonia maturation. Various methods of assessing whether a compound affords lower testes exposure are known to those of skill in the art and / or are described herein, for instance in Example 30. By lower testes exposure is meant a compound measured as having a K,> (testes) of less than about 1.0, or less than about 0.9, or less than about 0.8, or less than about 0.7, or less than about 0.6, or less than about 0.5, or less than about 0.4, or less than about 0.3, or less than about 0.2, or less than about 0.1, or less than about 0.09, or less than about 0.08, or less than about 0.07, or less than about 0.06, or less than about 0.05, or less than about 0.04, or 0.03, or less than about 0.02, or less than about 0.01.

[0091] In some embodiments, a compound of the present invention is not an inducer of CYP3A4, as measured by, for instance, Example 31. For instance, in some embodiments, acompound of the present invention when measured as described herein exhibits an induction fold of less than or equal to about 10-fold. In some embodiments, a compound of the present invention when measured as described herein exhibits an induction fold of less than or equal to about 9-fold. In some embodiments, a compound of the present invention when measured as described herein exhibits an induction fold of less than or equal to about 8-fold. In some embodiments, a compound of the present invention when measured as described herein exhibits an induction fold of less than or equal to about 7-fold. In some embodiments, a compound of the present invention when measured as described herein exhibits an induction fold of less than or equal to about 6-fold. In some embodiments, a compound of the present invention when measured as described herein exhibits an induction fold of less than or equal to about 5-fold. In some embodiments, a compound of the present invention when measured as described herein exhibits an induction fold of less than or equal to about 4-fold. In some embodiments, a compound of the present invention when measured as described herein exhibits an induction fold of less than or equal to about 3-fold. In some embodiments, a compound of the present invention when measured as described herein exhibits an induction fold of less than or equal to about 2-fold.

[0092] In some embodiments, a compound of the present invention is not an inducer of CYP1A2, as measured by, for instance, Example 31. For instance, in some embodiments, a compound of the present invention when measured as described herein exhibits an induction fold of less than or equal to about 10-fold. In some embodiments, a compound of the present invention when measured as described herein exhibits an induction fold of less than or equal to about 9-fold. In some embodiments, a compound of the present invention when measured as described herein exhibits an induction fold of less than or equal to about 8-fold. In some embodiments, a compound of the present invention when measured as described herein exhibits an induction fold of less than or equal to about 7-fold. In some embodiments, a compound of the present invention when measured as described herein exhibits an induction fold of less than or equal to about 6-fold. In some embodiments, a compound of the present invention when measured as described herein exhibits an induction fold of less than or equal to about 5-fold. In some embodiments, a compound of the present invention when measured as described herein exhibits an induction fold of less than or equal to about 4-fold. In some embodiments, a compound of the present invention when measured as described herein exhibits an induction fold of less than or equal to about 3-fold. Insome embodiments, a compound of the present invention when measured as described herein exhibits an induction fold of less than or equal to about 2-fold.

[0093] In some embodiments, a compound of the present invention is not an inducer of CYP2C19. For instance, in some embodiments, a compound of the present invention when measured as described herein exhibits an induction fold of less than or equal to about 10-fold. In some embodiments, a compound of the present invention when measured as described herein exhibits an induction fold of less than or equal to about 9-fold. In some embodiments, a compound of the present invention when measured as described herein exhibits an induction fold of less than or equal to about 8-fold. In some embodiments, a compound of the present invention when measured as described herein exhibits an induction fold of less than or equal to about 7-fold. In some embodiments, a compound of the present invention when measured as described herein exhibits an induction fold of less than or equal to about 6-fold. In some embodiments, a compound of the present invention when measured as described herein exhibits an induction fold of less than or equal to about 5-fold. In some embodiments, a compound of the present invention when measured as described herein exhibits an induction fold of less than or equal to about 4-fold. In some embodiments, a compound of the present invention when measured as described herein exhibits an induction fold of less than or equal to about 3 -fold. In some embodiments, a compound of the present invention when measured as described herein exhibits an induction fold of less than or equal to about 2-fold.

[0094] In some embodiments, a compound of Formula I is administered orally, as described further herein. In some embodiments, a compound of Formula I is administered by a means other than oral administration, as described further herein.

[0095] In some embodiments, it has been unexpectedly found that certain compounds of Formula I exhibit improved solubility as compared to c-KIT inhibitors known in the art when measured according to the procedure set forth in Example 32.

[0096] In some embodiments, a compound of Formula II is administered orally, as described further herein. In some embodiments, a compound of Formula II is administered by a means other than oral administration, as described further herein.

[0097] In some embodiments, it has been unexpectedly found that certain compounds of Formula II exhibit improved solubility as compared to c-KIT inhibitors known in the art when measured according to the procedure set forth in Example 32.

[0098] In some embodiments, compounds of the present invention have a solubility greater than 2.0 μM. and less than or equal to 10.0 μM.. In some embodiments, compounds of the present invention have a solubility of about 2.5 μM, about 3.0 μM, about 3.5 μM, about 4.0 μM, about 4.5 μM, about 5.0 μM, about 5.5 μM, about 6.0 μM, about 6.5 μM, about 7.0 μM.. about 7.5 μM, about 8.0 μM, about 9.0 μM, about 9.5 μM, or about 10.0 μM.. In some embodiments, compounds of the present invention have a solubility greater than 10 μM. and less than or equal to 50 μM.. In some embodiments, compounds of the present invention have a solubility of about 15 μM, about 20 μM, about 25 μM, about 30 μM, about 35 μM.. about 40 μM, about 45 μM, or about 50 μM.. In some embodiments, compounds of the present invention have a solubility greater than 50 μM.. In some embodiments, compounds of the present invention have a solubility of about 60 μM, about 70 μM, about 80 μM, about 90 μM, about 100 μM, about 200 μM, about 300 μM, about 400 μM, 500 μM, about 600 μM, about 700 μM, about 800 μM, about 900 μM, about 1000 μM, about 1500 μM. or about 2000 μM...

[0099] In some embodiments, when L is a bond and RBisX is S. In some embodiments, when

[0100] As described above and herein, in some embodiments, R1represents independently for each occurrence halogen, -CN, -OR, -NR2, -C(O)R, -C(O)OR, -C(O)NR2, C1-6 alkyl, or C1-6 haloalkyl. In some embodiments, R1represents independently for each occurrence halogen. In some embodiments, R1represents independently for each occurrence fluoro, chloro, or bromo. In some embodiments, R1represents independently for each occurrence -CN. In some embodiments, R1represents independently for each occurrence -OR. In some embodiments, R1represents independently for each occurrence -OCH3. In some embodiments, R1represents independently for each occurrence -NR2. In some embodiments, R1represents independently for each occurrence -NH2. In some embodiments, R1represents independently for each occurrence -C(O)R. In some embodiments, R1represents independently for each occurrence -C(O)CH3. In some embodiments,R1represents independently for each occurrence -C(O)OR. In some embodiments, R1represents independently for each occurrence -C(0)0CH3. In some embodiments, R1represents independently for each occurrence -C(0)NR2. In some embodiments, R1represents independently for each occurrence -C(0)NH2. In some embodiments, R1represents independently for each occurrence -C(0)NHCH3. In some embodiments, R1represents independently for each occurrence -C(O)N(CH3)2. In some embodiments, R1represents independently for each occurrence Ci-6 alkyl or Ci-6 haloalkyl. In some embodiments, R1represents independently for each occurrence Ci-6 alkyl. In some such embodiments, R1represents independently for each occurrence methyl. In some embodiments, R1represents independently for each occurrence Ci-6 haloalkyl. In some such embodiments, R1represents independently for each occurrence -CF3, -CF2H, or -CFH2. In some embodiments, at least one R1is fluoro. In some embodiments, at least one R1is chloro. In some embodiments, at least one R1is bromo. In some embodiments, at least one R1is -CN. In some embodiments, at least one R1is -OR. In some such embodiments, at least one R1is -OMe. In some embodiments, at least one R1is methyl. In some embodiments, at least one R1is -CF3. In some embodiments, at least one R1is -CF2H. In some embodiments, at least one R1is -CFH2.

[0101] In some embodiments, R1is halogen, -CN, -OR, -NR2, C1-6 alkyl, or Ci-6 haloalkyl. In some embodiments, R1is halogen. In some embodiments, R1is fluoro, chloro, or bromo. In some embodiments, R1is -CN. In some embodiments, R1is -OR. In some embodiments, R1is -NR2. In some embodiments, R1is -NH2. In some embodiments, R1is Ci-6 alkyl or Ci-6 haloalkyl. In some embodiments, R1is Ci-6 alkyl. In some such embodiments, R1is methyl. In some embodiments, R1is C 1-6 haloalkyl. In some such embodiments, R1is -CF3, -CF2H, or -CFH2.

[0102] In some embodiments, R1is as depicted in Table 1, below.

[0103] In some embodiments, R1is as described above and herein, wherein m is 0 or 1. In some such embodiments, m is 0. In some such embodiments, m is 1.

[0104] As described above and herein, R2represents independently for each occurrence halogen, oxo, Ci-6 aliphatic, phenyl, a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring; a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur; or a 5-6 membered monocyclic heteroaryl ring having 1-4 heteroatoms independently selected fromnitrogen, oxygen, and sulfur; an 8-10 membered bicyclic heteroaryl ring having 1-5 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 5-10 membered saturated or partially unsaturated bridged bicyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 6-11 membered saturated or partially unsaturated spirocyclic ring having 0- 3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; or a 6-11 membered saturated or partially unsaturated bicyclic heterocyclic ring having 1-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur, or L'-R4; wherein R2is substituted with p occurrences ofR6.

[0105] In some embodiments, R2represents independently for each occurrence halogen. In some embodiments, R2represents independently for each occurrence chloro flouro, or bromo. In some embodiments, R2represents independently for each occurrence chloro or flouro.

[0106] In some embodiments, R2represents independently for each occurrence Ci-6 aliphatic. In some such embodiments, R2represents independently for each occurrence Ci-6 alkyl. In some such embodiments, R2represents independently for each occurrence methyl, ethyl, or propyl.

[0107] In some embodiments, R2represents independently for each occurrence a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring. In some embodiments, R2represents independently for each occurrence a 3-membered saturated monocyclic carbocyclic ring. In some embodiments, R2represents independently for each occurrence a 4-membered saturated monocyclic carbocyclic ring. In some embodiments, R2represents independently for each occurrence a 5-membered saturated monocyclic carbocyclic ring. In some embodiments, R2represents independently for each occurrence a 6-membered saturated monocyclic carbocyclic ring. In some embodiments, R2represents independently for each occurrence a 7-membered saturated monocyclic carbocyclic ring.

[0108] In some embodiments, R2represents independently for each occurrence a 3-4 membered saturated monocyclic carbocyclic ring substituted with 0-2 occurrences of R6. In some embodiments, R2represents independently for each occurrence a 3 membered saturated monocyclic carbocyclic ring substituted with 0-2 occurrences of R6. In some embodiments, R2represents independently for each occurrence a 4 membered saturated monocyclic carbocyclic ring substituted with 0-2 occurrences of R6. In some embodiments, R2represents independently for each occurrence a 3-4 membered saturated monocyclic carbocyclic ring substituted with 1-2occurrences of R6. In some such embodiments, at least one R6is fluoro. In some such embodiments, two R6are fluoro. In some such embodiments, at least one R6is methyl. In some such embodiments, at least one R6is -CN.

[0109] In some embodiments, R2represents independently for each occurrence a 5 membered saturated monocyclic carbocyclic ring substituted with 0-2 occurrences of R6. In some embodiments, R2represents independently for each occurrence a 5 membered saturated monocyclic carbocyclic ring substituted with 1-2 occurrences of R6. In some such embodiments, at least one R6is fluoro. In some such embodiments, two R6are fluoro. In some such embodiments, at least one R6is methyl. In some such embodiments, at least one R6is -CN.

[0110] In some embodiments, R2represents independently for each occurrence a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2represents independently for each occurrence a 3 membered saturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2represents independently for each occurrence a 4 membered saturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2represents independently for each occurrence a 4 membered saturated monocyclic heterocyclic ring having 1 heteroatom independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2represents independently for each occurrence a 4 membered saturated monocyclic heterocyclic ring having 1 heteroatom independently selected from nitrogen. In some embodiments, R2represents independently for each occurrence a 5 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2represents independently for each occurrence a 6 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2represents independently for each occurrence a 7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur.

[0111] In some embodiments, R2represents independently for each occurrence a 4-5 membered saturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected fromnitrogen, oxygen, and sulfur substituted with 0-2 occurrences of R6. In some embodiments, R2represents independently for each occurrence a 4-5 membered saturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur substituted with 1-2 occurrences of R6. In some such embodiments, at least one R6is fluoro. In some such embodiments, two R6are fluoro. In some such embodiments, at least one R6is methyl. In some such embodiments, at least one R6is -CN.

[0112] In some embodiments, R2represents independently for each occurrence a 5-6 membered monocyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2represents independently for each occurrence a 5 membered monocyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2represents independently for each occurrence a 6 membered monocyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur.

[0113] In some embodiments, R2represents independently for each occurrence an 8-10 membered bicyclic heteroaryl ring having 1-5 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2represents independently for each occurrence an 8- 10 membered bicyclic heteroaryl ring having 1-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2represents independently for each occurrence an 8 membered bicyclic heteroaryl ring having 1 -5 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2represents independently for each occurrence a 9 membered bicyclic heteroaryl ring having 1-5 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2represents independently for each occurrence a 10 membered bicyclic heteroaryl ring having 1-5 heteroatoms independently selected from nitrogen, oxygen, and sulfur.

[0114] In some embodiments, R2represents independently for each occurrence a 5-10 membered saturated or partially unsaturated bridged bicyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2represents independently for each occurrence a 5-10 membered saturated or partially unsaturated bridged bicyclic ring having 1-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2represents independently for each occurrence a 5-10 membered saturatedbridged bicyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2represents independently for each occurrence a 5-10 membered partially unsaturated bridged bicyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2represents independently for each occurrence a 5-10 membered saturated or partially unsaturated bridged bicyclic ring having 0 heteroatoms. In some embodiments, R2represents independently for each occurrence a 5-10 membered saturated or partially unsaturated bridged bicyclic ring having one heteroatom independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2represents independently for each occurrence a 5-10 membered saturated or partially unsaturated bridged bicyclic ring having two heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2represents independently for each occurrence a 5-10 membered saturated or partially unsaturated bridged bicyclic ring having three heteroatoms independently selected from nitrogen, oxygen, and sulfur.

[0115] In some embodiments, R2represents independently for each occurrence a 6-11 membered saturated or partially unsaturated spirocyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2is a 6-11 membered saturated or partially unsaturated spirocyclic ring having 0 heteroatoms. In some embodiments, R2represents independently for each occurrence a 6-11 membered saturated or partially unsaturated spirocyclic ring having 1-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur.

[0116] In some embodiments, R2represents independently for each occurrence a 6-11 membered saturated or partially unsaturated bicyclic heterocyclic ring having 1-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur.

[0117] In some embodiments, R2represents independently for each occurrence L1-R4.

[0118] In some embodiments, R2is C1-6 aliphatic. In some such embodiments, R2is C1-6 alkyl. In some such embodiments, R2is methyl, ethyl, or propyl. In some embodiments, R2is - CH2CH(OH)CH3.

[0119] In some embodiments, R2is halogen. In some embodiments, R2is flouro or chloro. In some embodiments, R2is flouro.

[0120] In some embodiments, R2is oxo. In some embodiments, R2is phenyl.

[0121] In some embodiments, R2is a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring. In some embodiments, R2is a 3-membered saturated monocyclic carbocyclic ring. In some embodiments, R2is a 4-membered saturated monocyclic carbocyclic ring. In some embodiments, R2is a 5-membered saturated monocyclic carbocyclic ring. In some embodiments, R2is a 6-membered saturated monocyclic carbocyclic ring. In some embodiments, R2is a 7-membered saturated monocyclic carbocyclic ring. In some embodiments, R2is a 3-4 membered saturated monocyclic carbocyclic ring.

[0122] In some embodiments, R2is a 3-4 membered saturated monocyclic carbocyclic ring substituted with 0-2 occurrences of R6. In some embodiments, R2is a 3 membered saturated monocyclic carbocyclic ring substituted with 0-2 occurrences of R6. In some embodiments, R2is a 4 membered saturated monocyclic carbocyclic ring substituted with 0-2 occurrences of R6. In some embodiments, R2is a 3-4 membered saturated monocyclic carbocyclic ring substituted with 1-2 occurrences of R6. In some such embodiments, at least one R6is fluoro. In some such embodiments, two R6are fluoro. In some such embodiments, at least one R6is methyl. In some such embodiments, at least one R6is -CN.

[0123] In some embodiments, R2is a 5 membered saturated monocyclic carbocyclic ring substituted with 0-2 occurrences of R6. In some embodiments, R2is a 5 membered saturated monocyclic carbocyclic ring substituted with 1-2 occurrences of R6. In some such embodiments, at least one R6is fluoro. In some such embodiments, two R6are fluoro. In some such embodiments, at least one R6is methyl. In some such embodiments, at least one R6is -CN.

[0124] In some embodiments, R2is a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2is a 3 membered saturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2is a 4 membered saturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2is a 4 membered saturated monocyclic heterocyclic ring having 1 heteroatom independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2is a 4 membered saturated monocyclic heterocyclic ring having 1 heteroatom independently selected from nitrogen. In someembodiments, R2is a 5 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2is a 6 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2is a 7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur.

[0125] In some embodiments, R2is a 4-5 membered saturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur substituted with 0-2 occurrences of R6. In some embodiments, R2is a 4-5 membered monocyclic heterocyclic ring having 1 nitrogen atom. In some embodiments, R2is a 4-5 membered saturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur substituted with 1-2 occurrences of R6. In some such embodiments, at least one R6is fluoro. In some such embodiments, two R6are fluoro. In some such embodiments, at least one R6is methyl. In some such embodiments, at least one R6is -CN.

[0126] In some embodiments, R2is a 5-6 membered monocyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2is a 5 membered monocyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2is a 6 membered monocyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur.

[0127] In some embodiments, R2is an 8-10 membered bicyclic heteroaryl ring having 1-5 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2is an 8-10 membered bicyclic heteroaryl ring having 1-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2is an 8 membered bicyclic heteroaryl ring having 1-5 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2is a 9 membered bicyclic heteroaryl ring having 1-5 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2is a 10 membered bicyclic heteroaryl ring having 1-5 heteroatoms independently selected from nitrogen, oxygen, and sulfur.

[0128] In some embodiments, R2is a 5-10 membered saturated or partially unsaturated bridged bicyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2is a 5-10 membered saturated or partially unsaturated bridged bicyclic ringhaving 1 -3 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2is a 5-10 membered saturated bridged bicyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2is a 5-10 membered partially unsaturated bridged bicyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2is a 5-10 membered saturated or partially unsaturated bridged bicyclic ring having 0 heteroatoms. In some embodiments, R2is a 5-10 membered saturated or partially unsaturated bridged bicyclic ring having one heteroatom independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2is a 5-10 membered saturated or partially unsaturated bridged bicyclic ring having two heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2is a 5-10 membered saturated or partially unsaturated bridged bicyclic ring having three heteroatoms independently selected from nitrogen, oxygen, and sulfur.

[0129] In some embodiments, R2is a 6-11 membered saturated or partially unsaturated spirocyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2is a 6-11 membered saturated or partially unsaturated spirocyclic ring having 0 heteroatoms. In some embodiments, R2is a 6-11 membered saturated or partially unsaturated spirocyclic ring having 1-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur.

[0130] In some embodiments, R2is a 6-1 1 membered saturated or partially unsaturated bicyclic heterocyclic ring having 1-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur.

[0131] In some embodiments, R2is I?-R4.

[0132] As described above and herein, each L1represents independently for each occurrence a Ci-2 bivalent saturated or unsaturated, straight or branched hydrocarbon chain wherein one methylene unit of the chain is optionally and independently replaced by -C(R)2-, -N(R)-, - N(R)C(O)-, -C(O)N(R)-, -N(R)S(O)2-, -S(O)2N(R)-, -O-, -C(O)-, -OC(O)-, -C(O)O-, -S-, -S(O)-, or -S(O)2-. In some embodiments, L1is a Ci-2bivalent saturated or unsaturated, straight or branched hydrocarbon chain wherein one methylene unit of the chain is optionally and independently replaced by -C(R)2-, -N(R)-, -N(R)C(O)-, -C(O)N(R)-, -N(R)S(O)2-, -S(O)2N(R)- , -O-, -C(O)-, -OC(O)-, -C(O)O-, -S-, -S(O)-, or -S(O)2-. As described above and defined herein,L is a bond or -N(R)-, -N(R)C(O)-, -N(R)C(O)N(R)-, -C(O)N(R)-, -N(R)S(O)2-, -S(O)2N(R)-, - O-, -C(O)-, -OC(O)-, -C(O)O-, -S-, -S(O)-, or -S(O)2- In some embodiments, L is a bond. In some embodiments, L is -N(R)-, -N(R)C(O)-, -N(R)C(O)N(R)-, -C(O)N(R)-, -N(R)S(O)2- , -S(O)2N(R)-, -O-, -C(O)-, -OC(O)-, -C(O)O-, -S-, -S(O)-, or -S(O)2-.

[0133] In some embodiments, L1is -O-, -C(O)-, -OC(O)-, or -C(O)O-.

[0134] As described above and defined herein, R4represents independently for each occurrence a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring, or a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R4represents independently for each occurrence a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring. In some embodiments, R4represents independently for each occurrence a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur.

[0135] In some embodiments, R4is a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring, or a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R4is a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring. In some embodiments, R4is a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur.

[0136] As described above and herein, R6represents independently for each occurrence oxo, halogen, -CN, -NO2, -OR, -OCR3, -SR, -NR2, -S(O)2R, -S(O)2NR2, -S(O)R, -S(O)NR2, - C(R)2OR, -C(O)R, -C(O)OR, -C(O)NR2, -C(O)N(R)OR, -OC(O)R, -OC(O)NR2, - N(R)C(O)OR, -N(R)C(O)R, -N(R)C(O)NR2, -N(R)C(NR)NR2, -N(R)NR2, -N(R)S(O)2NR2, - N(R)S(O)2R, -N=S(O)R2, -S(NR)(O)R, -N(R)S(O)R, -N(R)CN, or optionally substituted phenyl.

[0137] In some embodiments, R6represents independently for each occurrence oxo, halogen, -CN, -NO2, -OR, -OCR3, -SR, -NR2, -S(O)2R, -S(O)2NR2, -S(O)R, -S(O)NR2, - C(R)2OR, -C(O)R, -C(O)OR, -C(O)NR2, -C(O)N(R)OR, -OC(O)R, -OC(O)NR2, - N(R)C(O)OR, -N(R)C(O)R, -N(R)C(O)NR2, -N(R)C(NR)NR2, -N(R)NR2, -N(R)S(O)2NR2, - N(R)S(O)2R, -N=S(O)R2, -S(NR)(O)R, -N(R)S(O)R, or -N(R)CN.

[0138] In some embodiments, R6represents independently for each occurrence halogen, -CN, -OR, or -S(O)2R. In some embodiments, R6represents independently for each occurrence fluoro, -CN, or -OH.

[0139] In some embodiments, at least one R6is halogen. In some embodiments, at least one R6is fluoro. In some embodiments, at least two R6are fluoro. In some embodiments, at least one R6is methyl. In some embodiments, at least one R6is cyano.

[0140] As described above and herein, R7is hydrogen or C1-3 alkyl. In some embodiments, R7is hydrogen. In some embodiments, R7is C1-3 alkyl. In some embodiments, R7is methyl. In some embodiments, R7is as depicted in Table 1, below.

[0141] In some embodiments, R2is selected from:

[0143] In some embodiments, R2is selected from:

[0144] In some embodiments, R2is selected from:

[0145] In some embodiments, R2is as described above and herein, wherein R2is substituted with p occurrences of R6. In some such embodiments, p is 0. In some such embodiments, p is 1. In some such embodiments, p is 2. In some such embodiments, p is 3. In some such embodiments, p is 4. In some such embodiments, p is 5.

[0146] In some embodiments, R2is as depicted in Table 1, below.

[0147] As described above and herein, RAis of either of the following structures:each of which is substituted by n occurrences of R3.

[0148] In some embodiments, RAis. In some embodiments, RAis

[0149] In some embodiments, RAis any of those depicted in Table 1 below.

[0150] As described above and herein, each RAis substituted by n occurrences of R3. In some embodiments, n is 0. In some embodiments, n is 1. In some embodiments, n is 2. In some embodiments, n is 3. In some embodiments, n is 4. In some embodiments, n is 5.

[0151] As descibed above and herein RBis phenyl, a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring; a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur; or a 5-6 membered monocyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; wherein RBis substituted with q occurrences of R2.

[0152] In some embodiments, RBis phenyl. In some embodiments, RBis a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring substituted with q occurrences of R2. In some embodiments, RBis a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur substituted with q occurrences of R2. In some embodiments, RBis a 5-6 membered monocyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur substituted with q occurrences of R2.

[0153] In some embodiments, RBis selected from:

[0154] As described above and herein, R3represents independently for each occurrence oxo, halogen, -CN, -NO2, -OR, -OCR3, -SR, -NR2, -S(O)2R, -S(O)2NR2, -S(O)R, -S(O)NR2, - C(R)2OR, -C(O)R, -C(O)OR, -C(O)NR2, -C(O)N(R)OR, -OC(O)R, -OC(O)NR2, - N(R)C(O)OR, -N(R)C(O)R, -N(R)C(O)NR2, -N(R)C(NR)NR2, -N(R)NR2, -N(R)S(O)2NR2, - N(R)S(O)2R, -N=S(O)R2, -S(NR)(O)R, -N(R)S(O)R, -N(R)CN, -L2-R5, or an optionally substituted group selected from C1-6 aliphatic, C1-6 haloaliphatic, phenyl, naphthalenyl, a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring; a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur; or a 5-6 membered monocyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; an 8-10 membered bicyclic heteroaryl ring having 1-5 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 5-8 membered saturated or partially unsaturated bridged bicyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 6-11 membered saturated or partially unsaturated spirocyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; or a 6-11 membered saturated or partially unsaturated bicyclic heterocyclic ring having 1-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; each of which is substituted with r instances of R; or: two R3groups on adjacent carbon atoms are taken together with the carbon atoms to which they attach to form an optionally substituted 4-7 membered saturated monocyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur, each of which is substituted with r instance of R.

[0155] In some embodiments, R3represents independently for each occurrence oxo, halogen, -CN, -NO2, -OR, -OCR3, -SR, -NR2, -S(O)2R, -S(O)2NR2, -S(O)R, -S(O)NR2, - C(R)2OR, -C(O)R, -C(O)OR, -C(O)NR2, -C(O)N(R)OR, -OC(O)R, -OC(O)NR2, - N(R)C(O)OR, -N(R)C(O)R, -N(R)C(O)NR2, -N(R)C(NR)NR2, -N(R)NR2, -N(R)S(O)2NR2, - N(R)S(O)2R, -N=S(O)R2, -S(NR)(O)R, -N(R)S(O)R, -N(R)CN, or -L2-R5.

[0156] In some embodiments, R3represents independently for each occurrence halogen. In some embodiments, R3is halogen. In some embodiments, R3is -CN. In some embodiments, at least one R3is fluoro. In some embodiments, at least one R3is chloro. In some embodiments, at least one R3is bromo. In some embodiments, at least one R3is -CN. In some embodiments, at least one R3is -OR. In some embodiments, wherein at least one R3is -OR, wherein R is C1-6alkyl. In some embodiments, at least one R3is -OR, wherein R is methyl, ethyl, or propyl. In some embodiments, at least one R3is -OR, wherein R is methyl. In some embodiments, at least one R3is -OR, wherein R is ethyl. In some embodiments, at least one R3is -OR, wherein R is propyl. In some embodiments, at least one R3is -OCR3, wherein at least one R is fluoro. In some embodiments, at least one R3is -NR2. In some embodiments, wherein at least one R3is -NR2, at least one R is hydrogen. In some embodiments, wherein at least one R3is -NR2, at least one R is methyl or ethyl. In some embodiments, wherein at least one R3is -NR2, at least one R is optionally substituted phenyl. In some embodiments, wherein at least one R3is -NR2, the two R groups on the same nitrogen are taken together with the nitrogen to form an optionally substituted 4-7 membered monocyclic saturated ring having 1-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, at least one R3is - N(R)S(O)2R. In some such embodiments, each R is independently hydrogen, C1-6 alkyl, C3-6 cycloalkyl, naphthalenyl, or a 5-membered heteroaryl ring having one, two, or three heteroatoms independently selected from nitrogen, oxygen, or sulfur.

[0157] In some embodiments, at least one R3is -L2-R5. In some such embodiments, one, two, or three methylene units of L2are independently replaced by -O- or -Cy-. In some such embodiments, one, two, or three methylene units of L2are independently replaced by -N(R)- or - Cy-.

[0158] In some embodiments, at least one R3is a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some such embodiments, at least one R3is oxetane.

[0159] In some embodiments, at least one R3is -CF3, -CF2H, or -CFH2.

[0160] In some embodiments, R3represents independently for each occurrence C1-6 aliphatic or Ci-6 haloaliphatic.

[0161] In some embodiments, R3represents independently for each occurrence phenyl or naphthalenyl.

[0162] In some embodiments, R3represents independently for each occurrence a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring.

[0163] In some embodiments, R3represents independently for each occurrence a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur.

[0164] In some embodiments, R3represents independently for each occurrence a 5-6 membered monocyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur.

[0165] In some embodiments, R3represents independently for each occurrence an 8-10 membered bicyclic heteroaryl ring having 1-5 heteroatoms independently selected from nitrogen, oxygen, and sulfur.

[0166] In some embodiments, R3represents independently for each occurrence a 5-8 membered saturated or partially unsaturated bridged bicyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur.

[0167] In some embodiments, R3represents independently for each occurrence a 6-11 membered saturated or partially unsaturated spirocyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur.

[0168] In some embodiments, R3represents independently for each occurrence or a 6-11 membered saturated or partially unsaturated bicyclic heterocyclic ring having 1-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur.

[0169] In some embodiments, two R3groups on adjacent carbon atoms are taken together with the carbon atoms to which they attach to form an optionally substituted 4-7 membered saturated monocyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, two R3groups on adjacent carbon atoms are taken together with the carbon atoms to which they attach to form an optionally substituted 4-7 membered saturated monocyclic ring having 1-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, two R3groups on adjacent carbon atoms are taken together with the carbon atoms to which they attach to form an optionally substituted 5 membered saturated monocyclic ring having 1-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, two R3groups on adjacent carbon atoms are taken together with the carbon atomsto which they attach to form an optionally substituted 4-7 membered saturated monocyclic ring having one heteroatom independently selected from oxygen.

[0170] In some embodiments, R3represents independently for each occurrence -L2-R5.

[0171] As described above and herein, each L2represents independently for each occurrence a Ci-6 bivalent saturated or unsaturated, straight or branched hydrocarbon chain wherein one, two, or three methylene units of the chain are optionally and independently replaced by -C(R)2-, -N(R)- , -N(R)C(O)-, -C(O)N(R)-, -N(R)S(O)2-, -S(O)2N(R)-, -O-, -C(O)-, -OC(O)-, -C(O)O-, -S-, -S(O)- , -S(O)2- or -Cy-. In some embodiments, each L2represents independently for each occurrence a Ci-6 bivalent saturated straight or branched hydrocarbon chain wherein one, two, or three methylene units of the chain are optionally and independently replaced by -C(R)2-, -N(R)-, - N(R)C(O)-, -C(O)N(R)-, -N(R)S(O)2-, -S(O)2N(R)-, -O-, -C(O)-, -OC(O)-, -C(O)O-, -S-, -S(O)-, -S(O)2- or -Cy-.

[0172] As described above and herein, -Cy- represents independently for each occurrence phenyl, a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring or a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur.

[0173] In some embodiments, -Cy- represents independently for each occurrence phenyl.

[0174] In some embodiments, -Cy- represents independently for each occurrence a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring or a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, -Cy- represents independently for each occurrence a 3-7 membered saturated monocyclic carbocyclic ring. In some embodiments, -Cy- represents independently for each occurrence a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur.

[0175] As described above and herein, R5represents independently for each occurrence hydrogen, OR, Ci-6 aliphatic, Ci-6 haloaliphatic, or phenyl fused to a 5-6 membered saturated heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R5represents independently for each occurrence hydrogen. In someembodiments, R5represents independently for each occurrence OR. In some such embodiments, R5represents independently for each occurrence OH or OMe. In some embodiments, R5represents independently for each occurrence Ci-6 aliphatic or Ci-6 haloaliphatic. In some embodiments, R?represents independently for each occurrence phenyl fused to a 5-6 membered saturated heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur.[00176J In some embodiments, each R3group is independently substituted with r instances of R. In some embodiments, r is 0. In some embodiments, r is 1. In some embodiments, r is 2. In some embodiments, r is 3. In some embodiments, r is 4. In some embodiments, r is 5.

[0177] In some embodiments, R3is independently for each occurrence selected from:

[0178] In some embodiments, R3is -OMe or -OiPr.

[0179] In some embodiments, R3is as depicted in Table 1 below.

[0180] In some embodiments X is O. In some embodiments, X is S.

[0181] As defined above and herein, R is independently for each occurrence, hydrogen, -CN, halogen, or an optionally substituted group selected from Ci-6 aliphatic; Ci-6 haloaliphatic; phenyl; naphthalenyl; a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring; a 3- 7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 5-6 membered monocyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; an 8-10 membered bicyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 7-12 membered saturated or partially unsaturated bicyclic heterocyclic ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 5-8 membered saturated or partially unsaturated bridged bicyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 6-10 membered saturated or partially unsaturated spirocyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 6-11 membered saturated or partially unsaturated bicyclic carbocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur; or: two R groups on the same nitrogen are taken together with the nitrogen to form an optionally substituted 4-7 membered monocyclic saturated, partially unsaturated, or heteroaryl ring having, in addition to the nitrogen, 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; an 8-10 membered bicyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 7-12 membered saturated or partially unsaturated bicyclicheterocyclic ring having 1 -4 heteroatoms independently selected from nitrogen, oxygen, and sulfur.

[0182] In some embodiments, R is independently for each occurrence hydrogen, -CN, halogen, or an optionally substituted Ci-6 aliphatic. In some embodiments, R is independently for each occurrence hydrogen. In some embodiments, R is fluoro. In some embodiments, R is independently for each occurrence an optionally substituted Ci-6 alkyl. In some such embodiments, R is methyl.

[0183] In some embodiments, R is independently for each occurrence an optionally substituted group selected from phenyl or naphthalenyl. In some embodiments, R is Ci-6 haloaliphatic.

[0184] In some embodiments, R is independently for each occurrence an optionally substituted group selected from a a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring; a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 5-6 membered monocyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; an 8-10 membered bicyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 7-12 membered saturated or partially unsaturated bicyclic heterocyclic ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 5-8 membered saturated or partially unsaturated bridged bicyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 6-10 membered saturated or partially unsaturated spirocyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 6-11 membered saturated or partially unsaturated bicyclic carbocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur.

[0185] In some embodiments, two R groups on the same nitrogen are taken together with the nitrogen to form an optionally substituted 4-7 membered monocyclic saturated, partially unsaturated, or heteroaryl ring having, in addition to the nitrogen, 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; an 8-10 membered bicyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 7-12 membered saturated or partially unsaturated bicyclic heterocyclic ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur.

[0186] In some embodiments, a compound of the present disclosure is represented by any of the following or a pharmaceutically acceptable salt thereof:I-c I-d wherein RA, R1, X, L, and RBare as defined above and described herein.

[0187] In some embodiments, a compound of the present disclosure is represented by the following or a pharmaceutically acceptable salt thereof:I-e wherein RA, R1, X, L, and RBare as defined above and described herein.

[0188] In some embodiments, a compound of the present disclosure is represented by either of the following or a pharmaceutically acceptable salt thereof:wherein RA, R1, L, and RBare as defined above and described herein.

[0189] In some embodiments, a compound of the present disclosure is represented by any of the following or a pharmaceutically acceptable salt thereofwherein R1, R3, L, and RBare as defined above and described herein. In some such embodiments,R3is -OiPr, -CH2O(CH2)2OH, or -CH2OCH2C(CH3)2OH, and R2is selected from F A- /

[0190] In some embodiments, a compound of the present disclosure is represented by the following, or a pharmaceutically acceptable salt thereof:I-m wherein R1, R2, and RAare as defined above and described herein.

[0191] In some embodiments, a compound is of any of formulae I-a - I-m above, wherein n is 0. In some embodiments, a compound is of any of formulae I-a - I-m above, wherein n is i.Formula 1-1:

[0192] In some embodiments, the present disclosure provides a compound represented by Formula (1-1):(1-1) or a pharmaceutically acceptable salt thereof; wherein:RAis of either of the following structures:each of which is substituted by n occurrences of R3;R3represents independently for each occurrence oxo, halogen, -CN, -NO2, -OR, -OCR3, -SR, -NR2, -S(O)2R, -S(O)2NR2, -S(O)R, -S(O)NR2, -C(R)2OR, -C(O)R, -C(O)OR, - C(O)NR2, -C(O)N(R)OR, -OC(O)R, -OC(O)NR2,N(R)C(O)OR, -N(R)C(O)R, -N(R)C(O)NR2, -N(R)C(NR)NR2, –N(R)NR2, -N(R)S(O)2NR2, – N(R)S(O)2R, –N=S(O)R2, –S(NR)(O)R, –N(R)S(O)R, –N(R)CN, -L2-R5, or an optionally substituted group selected from C1-6 aliphatic, C1-6 haloaliphatic, phenyl, naphthalenyl, a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring; a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur; or a 5-6 membered monocyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; an 8-10 membered bicyclic heteroaryl ring having 1-5 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 5-8 membered saturated or partially unsaturated bridged bicyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 6-11 membered saturated or partially unsaturated spirocyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; or a 6-11 membered saturated or partially unsaturated bicyclic heterocyclic ring having 1-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; each of which is substituted with r instances of R; or: two R3groups on adjacent carbon atoms are taken together with the carbon atoms to which they attach to form an optionally substituted 4-7 membered saturated monocyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur, substituted with r instances of R; L2represents independently for each occurrence a C1-6bivalent saturated or unsaturated, straight or branched hydrocarbon chain wherein one, two, or three methylene units of the chain are optionally and independently replaced by –C(R)2-, –N(R)-, -N(R)C(O)-, - C(O)N(R)-, -N(R)S(O)2-, -S(O)2N(R)-, -O-, -C(O)-, -OC(O)-, -C(O)O-, -S-, -S(O)-, –S(O)2- or -Cy-; Cy represents independently for each occurrence phenyl, a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring or a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur; R5represents independently for each occurrence hydrogen, OR, C1-6 aliphatic, C1-6 haloaliphatic, or phenyl fused to a 5-6 membered saturated heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur;X is O or S;R1represents independently for each occurrence halogen, -CN, -OR, -NR2, -C(O)R, - C(O)OR, -C(0)NR2, CI-6 alkyl, or Ci-ehaloalkyl;L is a bond or -N(R)-, -N(R)C(O)-, -N(R)C(O)N(R)-, -C(O)N(R)-, -N(R)S(O)2- , -S(O)2N(R)-, -O-, -C(O)-, -OC(O)-, -C(O)O-, -S-, -S(O)-, or -S(O)2-;RBis phenyl, a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring; a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur; or a 5-6 membered monocyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; wherein RBis substituted with q occurrences of R2;R2represents independently for each occurrence halogen, oxo, Ci-6 aliphatic, phenyl, a 3- 7 membered saturated or partially unsaturated monocyclic carbocyclic ring; a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur; or a 5-6 membered monocyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; an 8-10 membered bicyclic heteroaryl ring having 1-5 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 5-10 membered saturated or partially unsaturated bridged bicyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 6-11 membered saturated or partially unsaturated spirocyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; or a 6-11 membered saturated or partially unsaturated bicyclic heterocyclic ring having 1-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur, or L'-R1; wherein R2is substituted with p occurrences of R6;L1represents independently for each occurrence a C1.2 bivalent saturated straight or branched hydrocarbon chain wherein one methylene unit of the chain is optionally and independently replaced by -C(R)2-, -N(R)-, -N(R)C(O)-, -C(O)N(R)-, -N(R)S(O)2- , -S(O)2N(R)-, -O-, -C(O)-, -OC(O)-, -C(O)O-, -S-, -S(O)-, or -S(O)2-;R4represents independently for each occurrence a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring, or a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur;R6represents independently for each occurrence oxo, halogen, -CN, -NO2, -OR, -OCR3, -SR, -NR2, -S(O)2R, -S(O)2NR2, -S(O)R, -S(O)NR2, -C(R)2OR, -C(O)R, -C(O)OR, - C(O)NR2, -C(O)N(R)OR, -OC(O)R, -OC(O)NR2, -N(R)C(O)OR, -N(R)C(O)R, -N(R)C(O)NR2, -N(R)C(NR)NR2, -N(R)NR2, -N(R)S(O)2NR2, -N(R)S(O)2R, -N=S(O)R2, -S(NR)(O)R, -N(R)S(O)R, -N(R)CN, or optionally substituted phenyl; each R is independently hydrogen, -CN, halogen, or an optionally substituted group selected from C1-6 aliphatic; phenyl; naphthalenyl; a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring; a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 5-6 membered monocyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; an 8-10 membered bicyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 7-12 membered saturated or partially unsaturated bicyclic heterocyclic ring having 1- 4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 5-8 membered saturated or partially unsaturated bridged bicyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 6-10 membered saturated or partially unsaturated spirocyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 6-11 membered saturated or partially unsaturated bicyclic carbocyclic ring having 1- 2 heteroatoms independently selected from nitrogen, oxygen, and sulfur; or: two R groups on the same nitrogen are taken together with the nitrogen to form an optionally substituted 4-7 membered monocyclic saturated, partially unsaturated, or heteroaryl ring having, in addition to the nitrogen, 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; an 8-10 membered bicyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 7-12 membered saturated or partially unsaturated bicyclic heterocyclic ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; m is 0, 1, 2, 3, or 4; n is 0, 1, 2, 3, 4, or 5; p is 0, 1, 2, 3, 4, or 5; and q is 0, 1, 2, 3, 4, or 5.

[0193] In some embodiments, the present invention provides a compound represented byFormula II- 1 :(II-l) or a pharmaceutically acceptable salt thereof; wherein each of RA, X, R1, and m are as defined above and described herein for Formula 1-1.

[0194] The definitions of variables in Formula 1-1 or II-l above encompass multiple chemical groups. The application contemplates embodiments where, for example, (i) the definition of a variable is a single chemical group selected from those chemical groups set forth above, (ii) the definition of a variable is a collection of two or more of the chemical groups selected from those set forth above, and iii) the compound is defined by a combination of variables in which the variables are defined by (i) or (ii).

[0195] In certain embodiments, the compound is a compound of Formula 1-1.

[0196] In certain embodiments, the compound is a compound of Formula II-l.

[0197] The description above describes multiple embodiments relating to compounds of Formula 1-1 and II-l. The patent application specifically contemplates all combinations of the embodiments.

[0198] It has been surprisingly discovered that certain compounds of the present invention do not significantly penetrate the brain or minimally penetrate the brain, wherein the extent of brain penetration is measured by measuring “Kp,” i.e., the ratio of compound concentration in the brain and blood (Cbrain / Cpiasma) as demonstrated by certain assays described herein in Example 30. In some such embodiments, a compound of the present invention is characterized as having a K / ;(brain) of less than about 0.7, less than about 0.6, less than about 0.5, less than about 0.4, less than about 0.3, less than about 0.2, or less than about 0.1. In some embodiments, a compound of the present invention is characterized as having a Kpof less than about 0.7. In some embodiments, a compound of the present invention is characterized by having a Kpof less than about 0.6. In some embodiments, a compound of the present invention is characterized by having a I<;> of less than about 0.5. In some embodiments, a compound of the present invention is characterized by havinga I<;> of less than about 0.4. In some embodiments, a compound of the present invention is characterized by having a Kpof less than about 0.3. In some embodiments, a compound of the present invention is characterized by having a Kpof less than about 0.2. In some embodiments, a compound of the present invention is characterized by having a K / ;of less than about 0.1. In some embodiments, a compound of the present invention is characterized by having a KPof less than about 0.09. In some embodiments, a compound of the present invention is characterized by having a Kpof less than about 0.08. In some embodiments, a compound of the present invention is characterized by having a Kpof less than about 0.05. In some embodiments, a compound of the present invention is characterized by having a Kpof less than about 0.04. In some embodiments, a compound of the present invention is characterized by having a Kpof less than about 0.03. In some embodiments, a compound of the present invention is characterized by having a Kp of less than about 0.02. In some embodiments, a compound of the present invention is characterized by having a Kp of less than about 0.01. Various methods of assessing brain exposure are known to those of skill in the art and / or are described herein.

[0199] In some embodiments, for compounds with low Kp values, determination of Kp„„ from the unbound compounds plasma, brain and testes concentrations also supports peripheral restriction of the compounds.

[0200] In some embodiments, it has been surprisingly discovered that compounds of the present invention are Breast Cancer Resistance Protein (BCRP) efflux substrates. The human breast cancer resistance protein (BCRP, gene symbol ABCG2) is an ATP-binding cassette (ABC) efflux transporter. Among normal human tissues, BCRP is highly expressed on the apical membranes of the placental syncytiotrophoblasts, the intestinal epithelium, the liver hepatocytes, the endothelial cells of brain microvessels, testis, and the renal proximal tubular cells, contributing to the absorption, distribution, and elimination of drugs and endogenous compounds as well as tissue protection against xenobiotic exposure. As a result, BCRP has now been recognized by the FDA to be one of the key drug transporters involved in clinically relevant drug disposition.

[0201] Various methods of assessing whether a compound is a BCRP efflux substrate are known to those of skill in the art and / or are described herein, for instance in Example 29. In some embodiments, a compound of the present invention exhibits an efflux ratio (ER) of about 1-fold, indicating substantially no efflux. In some embodiments, a compound of the present inventionexhibits an efflux ratio (ER) of at least about 1 .5-fold. In some embodiments, a compound of the present invention exhibits an efflux ratio (ER) of at least about 2.0-fold. In some embodiments, a compound of the present invention exhibits an efflux ratio (ER) of at least about 3.5-fold. In some embodiments, a compound of the present invention exhibits an efflux ratio (ER) of at least about 4.0-fold. In some embodiments, a compound of the present invention exhibits an efflux ratio (ER) of at least about 4.5-fold. In some embodiments, a compound of the present invention exhibits an efflux ratio (ER) of at least about 5-fold. In some embodiments, a compound of the present invention exhibits an efflux ratio (ER) of at least about 6-fold. In some embodiments, a compound of the present invention exhibits an efflux ratio (ER) of at least about 7-fold. In some embodiments, a compound of the present invention exhibits an efflux ratio (ER) of at least about 8-fold. In some embodiments, a compound of the present invention exhibits an efflux ratio (ER) of at least about 9-fold. In some embodiments, a compound of the present invention exhibits an efflux ratio (ER) of at least about 10-fold. In some embodiments, a compound of the present invention exhibits an efflux ratio (ER) of at least about 15-fold. In some embodiments, a compound of the present invention exhibits an efflux ratio (ER) of at least about 20-fold. In some embodiments, a compound of the present invention exhibits an efflux ratio (ER) of at least about 25-fold. In some embodiments, a compound of the present invention exhibits an efflux ratio (ER) of at least about 30-fold. In some embodiments, a compound of the present invention exhibits an efflux ratio (ER) of at least about 35-fold. In some embodiments, a compound of the present invention exhibits an efflux ratio (ER) of at least about 40-fold. In some embodiments, a compound of the present invention exhibits an efflux ratio (ER) of at least about 45-fold. In some embodiments, a compound of the present invention exhibits an efflux ratio (ER) of at least about 50-fold.

[0202] In some embodiments, it has been surprisingly discovered that certain compounds of the present invention do not significantly inhibit BCRP.

[0203] Various methods of assessing whether a compound is a BCRP inhibitor are known to those of skill in the art and / or are described herein, for instance in Example 33. In some embodiments, compounds of the present invention have a BCRP inhibition IC50 of about 400 nM, or about 500 nM, or about 600 nM, or about 700 nM, or about 800 nM, or about 900 nM. In some embodiments, compounds of the present invention have a BCRP inhibition IC50 of about ImM, about 2 mM, about 3mM, about 4 mM, about 5 mM, about 6 mM, about 7 mM, about 8 mM, about9 mM, or about 10 mM. Tn some embodiments, compounds of the present invention have a BCRP inhibition IC50 of between about 500 nM and 10 mM. In some embodiments, compounds of the present invention have a BCRP inhibition IC50 of between about 500 nM and 5 mM. In some embodiments, compounds of the present invention have a BCRP inhibition IC50 of between about 500 nM and 1 mM. In some embodiments, compounds of the present invention have a BCRP inhibition IC50 of between about 1 mM and 10 mM. In some embodiments, compounds of the present invention have a BCRP inhibition IC50 of between about 1 mM and 5 mM. In some embodiments, compounds of the present invention have a BCRP inhibition IC50 of between about 5 mM and 10 mM. Exemplary compounds of the present invention are described further herein.

[0204] In some embodiments, it has been surprising discovered that compounds of the present invention are P-glycoprotein (PGP) efflux substrates. P-glycoprotein (PGP), an efflux membrane transporter, is also referred to in the art as multi-drug resistance protein 1 ((MDR1), permeability glycoprotein, P-gp, or Pgp, encoded by MDR1 / ABCB1 and belonging to the family of ATP- binding cassette transporters), and is widely distributed throughout the body and responsible for limiting cellular uptake and the distribution of xenobiotics and toxic substances. PGP is one of the most important transporters at the blood-brain barrier (BBB), where it is highly expressed in the vessel walls of the brain capillaries functioning as an efflux pump. PGP is also located throughout the human body in organs or tissues with an excretory and / or barrier function, such as the liver, kidney, placenta, and testes.

[0205] With respect to the placenta, PGP has been found to have a role in the regulation of drug disposition to the fetus and has been extensively studied. Expression of PGP in the placental trophoblast layer has been confirmed at the mRNA and protein levels in all phases of pregnancy. Several in vitro and in vivo studies have demonstrated functional activity of the transporter in matemo-fetal drug transport. PGP is able to actively pump drugs and other xenobiotics from trophoblast cells back to the maternal circulation, thus providing protection to the fetus.

[0206] In some embodiments, compounds of the present invention are efflux substrates of BRCP. In some embodiments, compounds of the present invention are efflux substrates of PGP. In some embodiments, compounds of the present invention are efflux substrates of one or both of BCRP and PGP.

[0207] It has been further surprisingly discovered that certain compounds of the present invention afford lower testes exposure, which may lead to better spermatogonia survival and / or spermatogonia maturation. Various methods of assessing whether a compound affords lower testes exposure are known to those of skill in the art and / or are described herein, for instance in Example 30. By lower testes exposure is meant a compound measured as having a K,, (testes) of less than about 1.0, or less than about 0.9, or less than about 0.8, or less than about 0.7, or less than about 0.6, or less than about 0.5, or less than about 0.4, or less than about 0.3, or less than about 0.2, or less than about 0.1, or less than about 0.09, or less than about 0.08, or less than about 0.07, or less than about 0.06, or less than about 0.05, or less than about 0.04, or 0.03, or less than about 0.02, or less than about 0.01.

[0208] In some embodiments, a compound of the present invention is not an inducer of CYP3A4, as measured by, for instance, Example 31. For instance, in some embodiments, a compound of the present invention when measured as described herein exhibits an induction fold of less than or equal to about 10-fold. In some embodiments, a compound of the present invention when measured as described herein exhibits an induction fold of less than or equal to about 9-fold. In some embodiments, a compound of the present invention when measured as described herein exhibits an induction fold of less than or equal to about 8-fold. In some embodiments, a compound of the present invention when measured as described herein exhibits an induction fold of less than or equal to about 7-fold. In some embodiments, a compound of the present invention when measured as described herein exhibits an induction fold of less than or equal to about 6-fold. In some embodiments, a compound of the present invention when measured as described herein exhibits an induction fold of less than or equal to about 5-fold. In some embodiments, a compound of the present invention when measured as described herein exhibits an induction fold of less than or equal to about 4-fold. In some embodiments, a compound of the present invention when measured as described herein exhibits an induction fold of less than or equal to about 3-fold. In some embodiments, a compound of the present invention when measured as described herein exhibits an induction fold of less than or equal to about 2-fold.

[0209] In some embodiments, a compound of the present invention is not an inducer of CYP1A2, as measured by, for instance, Example 31. For instance, in some embodiments, a compound of the present invention when measured as described herein exhibits an induction fold of less than or equal to about 10-fold. In some embodiments, a compound of the present inventionwhen measured as described herein exhibits an induction fold of less than or equal to about 9-fold. In some embodiments, a compound of the present invention when measured as described herein exhibits an induction fold of less than or equal to about 8-fold. In some embodiments, a compound of the present invention when measured as described herein exhibits an induction fold of less than or equal to about 7-fold. In some embodiments, a compound of the present invention when measured as described herein exhibits an induction fold of less than or equal to about 6-fold. In some embodiments, a compound of the present invention when measured as described herein exhibits an induction fold of less than or equal to about 5-fold. In some embodiments, a compound of the present invention when measured as described herein exhibits an induction fold of less than or equal to about 4-fold. In some embodiments, a compound of the present invention when measured as described herein exhibits an induction fold of less than or equal to about 3-fold. In some embodiments, a compound of the present invention when measured as described herein exhibits an induction fold of less than or equal to about 2-fold.

[0210] In some embodiments, a compound of the present invention is not an inducer of CYP2C19. For instance, in some embodiments, a compound of the present invention when measured as described herein exhibits an induction fold of less than or equal to about 10-fold. In some embodiments, a compound of the present invention when measured as described herein exhibits an induction fold of less than or equal to about 9-fold. In some embodiments, a compound of the present invention when measured as described herein exhibits an induction fold of less than or equal to about 8-fold. In some embodiments, a compound of the present invention when measured as described herein exhibits an induction fold of less than or equal to about 7-fold. In some embodiments, a compound of the present invention when measured as described herein exhibits an induction fold of less than or equal to about 6-fold. In some embodiments, a compound of the present invention when measured as described herein exhibits an induction fold of less than or equal to about 5-fold. In some embodiments, a compound of the present invention when measured as described herein exhibits an induction fold of less than or equal to about 4-fold. In some embodiments, a compound of the present invention when measured as described herein exhibits an induction fold of less than or equal to about 3 -fold. In some embodiments, a compound of the present invention when measured as described herein exhibits an induction fold of less than or equal to about 2-fold.

[0211] In some embodiments, a compound of Formula 1-1 is administered orally, as described further herein. In some embodiments, a compound of Formula 1-1 is administered by a means other than oral administration, as described further herein.

[0212] In some embodiments, it has been unexpectedly found that certain compounds of Formula 1-1 exhibit improved solubility as compared to c-KIT inhibitors known in the art when measured according to the procedure set forth in Example 32.

[0213] In some embodiments, a compound of Formula II- 1 is administered orally, as described further herein. In some embodiments, a compound of Formula II-l is administered by a means other than oral administration, as described further herein.

[0214] In some embodiments, it has been unexpectedly found that certain compounds of Formula II- 1 exhibit improved solubility as compared to c-KIT inhibitors known in the art when measured according to the procedure set forth in Example 32.

[0215] In some embodiments, compounds of the present invention have a solubility greater than 2.0 μM. and less than or equal to 10.0 μM.. In some embodiments, compounds of the present invention have a solubility of about 2.5 μM, about 3.0 μM, about 3.5 μM, about 4.0 μM, about 4.5 μM, about 5.0 μM, about 5.5 μM, about 6.0 μM, about 6.5 μM, about 7.0 μM, about 7.5 μM, about 8.0 μM, about 9.0 μM, about 9.5 μM, or about 10.0 μM.. In some embodiments, compounds of the present invention have a solubility greater than 10 μM. and less than or equal to 50 μM.. In some embodiments, compounds of the present invention have a solubility of about 15 μM, about 20 μM, about 25 μM, about 30 μM, about 35 μM, about 40 μM, about 45 μM, or about 50 μM.. In some embodiments, compounds of the present invention have a solubility greater than 50 μM.. In some embodiments, compounds of the present invention have a solubility of about 60 μM, about 70 μM, about 80 μM, about 90 μM, about 100 μM, about 200 μM, about 300 μM, about 400 μM, 500 μM, about 600 μM, about 700 μM, about 800 μM, about 900 μM, about 1000 μM, about 1500 μM. or about 2000 μM..[00216J In some embodiments, when L is a bond and RBis X is S. In someembodiments, when RBis X is S.

[0217] As described above and herein, in some embodiments, R1represents independently for each occurrence halogen, -CN, -OR, -NR2, -C(O)R, -C(O)OR, -C(O)NR2, C1-6 alkyl, or C1-6 haloalkyl. In some embodiments, R1represents independently for each occurrence halogen. In some embodiments, R1represents independently for each occurrence fluoro, chloro, or bromo. In some embodiments, R1represents independently for each occurrence -CN. In some embodiments, R1represents independently for each occurrence -OR. In some embodiments, R1represents independently for each occurrence -OCH3. In some embodiments, R1represents independently for each occurrence -NR2. In some embodiments, R1represents independently for each occurrence -NH2. In some embodiments, R1represents independently for each occurrence -C(O)R. In some embodiments, R1represents independently for each occurrence -C(O)CH3. In some embodiments, R1represents independently for each occurrence -C(O)OR. In some embodiments, R1represents independently for each occurrence -C(O)OCH3. In some embodiments, R1represents independently for each occurrence -C(O)NR2. In some embodiments, R1represents independently for each occurrence -C(O)NH2. In some embodiments, R1represents independently for each occurrence -C(O)NHCH3. In some embodiments, R1represents independently for each occurrence -C(O)N(CH3)2. In some embodiments, R1represents independently for each occurrence C1-6 alkyl or C1-6 haloalkyl. In some embodiments, R1represents independently for each occurrence Cue alkyl. In some such embodiments, R1represents independently for each occurrence methyl. In some embodiments, R1represents independently for each occurrence C1-6 haloalkyl. In some such embodiments, R1represents independently for each occurrence -CF3, -CF2H, or -CFH2. In some embodiments, at least one R1is fluoro. In some embodiments, at least one R1is chloro. In some embodiments, at least one R1is bromo. In some embodiments, at least one R1is -CN. In some embodiments, at least one R1is -OR. In some such embodiments, at least one R1is -OMe. In some embodiments, at least one R1is methyl. In some embodiments, at least one R1is -CF3. In some embodiments, at least one R1is -CF2H. In some embodiments, at least one R1is -CFH2.

[0218] In some embodiments, R1is halogen, -CN, -OR, -NR2, C1-6alkyl, or C1-6haloalkyl. In some embodiments, R1is halogen. In some embodiments, R1is fluoro, chloro, or bromo. In some embodiments, R1is -CN. In some embodiments, R1is -OR. In some embodiments, R1is -NR2. In some embodiments, R1is -NH2. In some embodiments, R1is C1-6alkyl or C1-6haloalkyl. In some embodiments, R1is C1-6 alkyl. In some such embodiments, R1is methyl. In some embodiments, R1is C1-6 haloalkyl. In some such embodiments, R1is -CF3, -CF2H, or -CFH2.

[0219] In some embodiments, R1is as depicted in Table 1, below.

[0220] In some embodiments, R1is as described above and herein, wherein m is 0, 1, 2, 3, or 4. In some such embodiments, m is 0. In some such embodiments, m is 1. In some such embodiments, m is 2. In some such embodiments, m is 3. In some such embodiments, m is 4.

[0221] As described above and herein, R2represents independently for each occurrence halogen, oxo, C1-6 aliphatic, phenyl, a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring; a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur; or a 5-6 membered monocyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; an 8-10 membered bicyclic heteroaryl ring having 1-5 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 5-10 membered saturated or partially unsaturated bridged bicyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 6-11 membered saturated or partially unsaturated spirocyclic ring having 0- 3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; or a 6-11 membered saturated or partially unsaturated bicyclic heterocyclic ring having 1-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur, or L1-R4; wherein R2is substituted with p occurrences of R6.

[0222] In some embodiments, R2represents independently for each occurrence halogen. In some embodiments, R2represents independently for each occurrence chloro flouro, or bromo. In some embodiments, R2represents independently for each occurrence chloro or flouro.

[0223] In some embodiments, R2represents independently for each occurrence C1-6aliphatic. In some such embodiments, R2represents independently for each occurrence C1-6 alkyl. In some such embodiments, R2represents independently for each occurrence methyl, ethyl, or propyl.

[0224] In some embodiments, R2represents independently for each occurrence a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring. In some embodiments, R2represents independently for each occurrence a 3-membered saturated monocyclic carbocyclic ring. In some embodiments, R2represents independently for each occurrence a 4-membered saturated monocyclic carbocyclic ring. In some embodiments, R2represents independently for each occurrence a 5-membered saturated monocyclic carbocyclic ring. In some embodiments, R2represents independently for each occurrence a 6-membered saturated monocyclic carbocyclic ring. In some embodiments, R2represents independently for each occurrence a 7-membered saturated monocyclic carbocyclic ring.

[0225] In some embodiments, R2represents independently for each occurrence a 3-4 membered saturated monocyclic carbocyclic ring substituted with 0-2 occurrences of R6. In some embodiments, R2represents independently for each occurrence a 3 membered saturated monocyclic carbocyclic ring substituted with 0-2 occurrences of R6. In some embodiments, R2represents independently for each occurrence a 4 membered saturated monocyclic carbocyclic ring substituted with 0-2 occurrences of R6. In some embodiments, R2represents independently for each occurrence a 3-4 membered saturated monocyclic carbocyclic ring substituted with 1-2 occurrences of R6. In some such embodiments, at least one R6is fluoro. In some such embodiments, two R6are fluoro. In some such embodiments, at least one R6is methyl. In some such embodiments, at least one R6is -CN.

[0226] In some embodiments, R2represents independently for each occurrence a 5 membered saturated monocyclic carbocyclic ring substituted with 0-2 occurrences of R6. In some embodiments, R2represents independently for each occurrence a 5 membered saturated monocyclic carbocyclic ring substituted with 1-2 occurrences of R6. In some such embodiments, at least one R6is fluoro. In some such embodiments, two R6are fluoro. In some such embodiments, at least one R6is methyl. In some such embodiments, at least one R6is -CN.

[0227] In some embodiments, R2represents independently for each occurrence a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2represents independently for each occurrence a 3 membered saturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments,R2represents independently for each occurrence a 4 membered saturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2represents independently for each occurrence a 4 membered saturated monocyclic heterocyclic ring having 1 heteroatom independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2represents independently for each occurrence a 4 membered saturated monocyclic heterocyclic ring having 1 heteroatom independently selected from nitrogen. In some embodiments, R2represents independently for each occurrence a 5 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2represents independently for each occurrence a 6 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2represents independently for each occurrence a 7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur.

[0228] In some embodiments, R2represents independently for each occurrence a 4-5 membered saturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur substituted with 0-2 occurrences of R6. In some embodiments, R2represents independently for each occurrence a 4-5 membered saturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur substituted with 1-2 occurrences of R6. In some such embodiments, at least one R6is fluoro. In some such embodiments, two R6are fluoro. In some such embodiments, at least one R6is methyl. In some such embodiments, at least one R6is -CN.

[0229] In some embodiments, R2represents independently for each occurrence a 5-6 membered monocyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2represents independently for each occurrence a 5 membered monocyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2represents independently for each occurrence a 6 membered monocyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur.

[0230] In some embodiments, R2represents independently for each occurrence an 8-10 membered bicyclic heteroaryl ring having 1-5 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2represents independently for each occurrence an 8- 10 membered bicyclic heteroaryl ring having 1-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2represents independently for each occurrence an 8 membered bicyclic heteroaryl ring having 1-5 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2represents independently for each occurrence a 9 membered bicyclic heteroaryl ring having 1-5 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2represents independently for each occurrence a 10 membered bicyclic heteroaryl ring having 1-5 heteroatoms independently selected from nitrogen, oxygen, and sulfur.

[0231] In some embodiments, R2represents independently for each occurrence a 5-10 membered saturated or partially unsaturated bridged bicyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2represents independently for each occurrence a 5-10 membered saturated or partially unsaturated bridged bicyclic ring having 1-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2represents independently for each occurrence a 5-10 membered saturated bridged bicyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2represents independently for each occurrence a 5-10 membered partially unsaturated bridged bicyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2represents independently for each occurrence a 5-10 membered saturated or partially unsaturated bridged bicyclic ring having 0 heteroatoms. In some embodiments, R2represents independently for each occurrence a 5-10 membered saturated or partially unsaturated bridged bicyclic ring having one heteroatom independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2represents independently for each occurrence a 5-10 membered saturated or partially unsaturated bridged bicyclic ring having two heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2represents independently for each occurrence a 5-10 membered saturated or partially unsaturated bridged bicyclic ring having three heteroatoms independently selected from nitrogen, oxygen, and sulfur.

[0232] In some embodiments, R2represents independently for each occurrence a 6-11 membered saturated or partially unsaturated spirocyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2is a 6-11 membered saturated or partially unsaturated spirocyclic ring having 0 heteroatoms. In some embodiments, R2represents independently for each occurrence a 6-11 membered saturated or partially unsaturated spirocyclic ring having 1-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur.

[0233] In some embodiments, R2represents independently for each occurrence a 6-11 membered saturated or partially unsaturated bicyclic heterocyclic ring having 1-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur.

[0234] In some embodiments, R2represents independently for each occurrence Lx-R4.

[0235] In some embodiments, R2is Ci-6 aliphatic. In some such embodiments, R2is Ci-6 alkyl. In some such embodiments, R2is methyl, ethyl, or propyl. In some embodiments, R2is - CH2CH(OH)CH3.

[0236] In some embodiments, R2is halogen. In some embodiments, R2is flouro or chloro. In some embodiments, R2is flouro.

[0237] In some embodiments, R2is oxo. In some embodiments, R2is phenyl.

[0238] In some embodiments, R2is a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring. In some embodiments, R2is a 3-membered saturated monocyclic carbocyclic ring. In some embodiments, R2is a 4-membered saturated monocyclic carbocyclic ring. In some embodiments, R2is a 5-membered saturated monocyclic carbocyclic ring. In some embodiments, R2is a 6-membered saturated monocyclic carbocyclic ring. In some embodiments, R2is a 7-membered saturated monocyclic carbocyclic ring. In some embodiments, R2is a 3-4 membered saturated monocyclic carbocyclic ring.

[0239] In some embodiments, R2is a 3-4 membered saturated monocyclic carbocyclic ring substituted with 0-2 occurrences of R6. In some embodiments, R2is a 3 membered saturated monocyclic carbocyclic ring substituted with 0-2 occurrences of R6. In some embodiments, R2is a 4 membered saturated monocyclic carbocyclic ring substituted with 0-2 occurrences of R6. In some embodiments, R2is a 3-4 membered saturated monocyclic carbocyclic ring substituted with1-2 occurrences of R6. In some such embodiments, at least one R6is fluoro. In some such embodiments, two R6are fluoro. In some such embodiments, at least one R6is methyl. In some such embodiments, at least one R6is -CN.

[0240] In some embodiments, R2is a 5 membered saturated monocyclic carbocyclic ring substituted with 0-2 occurrences of R6. In some embodiments, R2is a 5 membered saturated monocyclic carbocyclic ring substituted with 1-2 occurrences of R6In some such embodiments, at least one R6is fluoro. In some such embodiments, two R6are fluoro. In some such embodiments, at least one R6is methyl. In some such embodiments, at least one R6is -CN.

[0241] In some embodiments, R2is a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2is a 3 membered saturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2is a 4 membered saturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2is a 4 membered saturated monocyclic heterocyclic ring having 1 heteroatom independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2is a 4 membered saturated monocyclic heterocyclic ring having 1 heteroatom independently selected from nitrogen. In some embodiments, R2is a 5 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1 -2 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2is a 6 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2is a 7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur.

[0242] In some embodiments, R2is a 4-5 membered saturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur substituted with 0-2 occurrences of R6. In some embodiments, R2is a 4-5 membered monocyclic heterocyclic ring having 1 nitrogen atom. In some embodiments, R2is a 4-5 membered saturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur substituted with 1-2 occurrences of R6. In some such embodiments, at least one R6is fluoro. Insome such embodiments, two R6are fluoro. In some such embodiments, at least one R6is methyl. In some such embodiments, at least one R6is -CN.

[0243] In some embodiments, R2is a 5-6 membered monocyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2is a 5 membered monocyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2is a 6 membered monocyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur.

[0244] In some embodiments, R2is an 8-10 membered bicyclic heteroaryl ring having 1-5 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2is an 8-10 membered bicyclic heteroaryl ring having 1-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2is an 8 membered bicyclic heteroaryl ring having 1-5 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2is a 9 membered bicyclic heteroaryl ring having 1-5 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2is a 10 membered bicyclic heteroaryl ring having 1-5 heteroatoms independently selected from nitrogen, oxygen, and sulfur.

[0245] In some embodiments, R2is a 5-10 membered saturated or partially unsaturated bridged bicyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2is a 5-10 membered saturated or partially unsaturated bridged bicyclic ring having 1-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2is a 5-10 membered saturated bridged bicyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2is a 5-10 membered partially unsaturated bridged bicyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2is a 5-10 membered saturated or partially unsaturated bridged bicyclic ring having 0 heteroatoms. In some embodiments, R2is a 5-10 membered saturated or partially unsaturated bridged bicyclic ring having one heteroatom independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2is a 5-10 membered saturated or partially unsaturated bridged bicyclic ring having two heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2is a 5-10 membered saturated or partially unsaturated bridged bicyclic ring having three heteroatoms independently selected from nitrogen, oxygen, and sulfur.

[0246] In some embodiments, R2is a 6-11 membered saturated or partially unsaturated spirocyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R2is a 6-11 membered saturated or partially unsaturated spirocyclic ring having 0 heteroatoms. In some embodiments, R2is a 6-11 membered saturated or partially unsaturated spirocyclic ring having 1-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur.[00247J In some embodiments, R2is a 6-11 membered saturated or partially unsaturated bicyclic heterocyclic ring having 1-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur.

[0248] In some embodiments, R2is I?-R4.

[0249] As described above and herein, each L1represents independently for each occurrence a Ci-2 bivalent saturated or unsaturated, straight or branched hydrocarbon chain wherein one methylene unit of the chain is optionally and independently replaced by -C(R)2-, -N(R)-, - N(R)C(O)-, -C(O)N(R)-, -N(R)S(O)2-, -S(O)2N(R)-, -O-, -C(O)-, -OC(O)-, -C(O)O-, -S-, -S(O)-, or - S(O)2-. In some embodiments, L1is a C1-2 bivalent saturated or unsaturated, straight or branched hydrocarbon chain wherein one methylene unit of the chain is optionally and independently replaced by -C(R)2-, -N(R)-, -N(R)C(O)-, -C(O)N(R)-, -N(R)S(O)2-, -S(O)2N(R)- , -O-, -C(O)-, -OC(O)-, -C(O)O-, -S-, -S(O)-, or -S(O)2-. As described above and defined herein, L is a bond or -N(R)-, -N(R)C(O)-, -N(R)C(O)N(R)-, -C(O)N(R)-, -N(R)S(O)2-, -S(O)2N(R)-, - O-, -C(O)-, -OC(O)-, -C(O)O-, -S-, -S(O)-, or -S(O)2-. In some embodiments, L is a bond. In some embodiments, L is -N(R)-, -N(R)C(O)-, -N(R)C(O)N(R)-, -C(O)N(R)-, -N(R)S(O)2- , -S(O)2N(R)-, -O-, -C(O)-, -OC(O)-, -C(O)O-, -S-, -S(O)-, or -S(O)2-.

[0250] In some embodiments, L1is -O-, -C(O)-, -OC(O)-, or -C(O)O-.

[0251] As described above and defined herein, R4represents independently for each occurrence a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring, or a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R4represents independently for each occurrence a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring. In some embodiments, R4represents independently for each occurrence a 3-7membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur.

[0252] In some embodiments, R4is a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring, or a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R4is a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring. In some embodiments, R4is a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur.

[0253] As described above and herein, R6represents independently for each occurrence oxo, halogen, -CN, -NO2, -OR, -OCR3, -SR, -NR2, -S(O)2R, -S(O)2NR2, -S(O)R, -S(O)NR2, - C(R)2OR, -C(O)R, -C(O)OR, -C(O)NR2, -C(O)N(R)OR, -OC(O)R, -OC(O)NR2, - N(R)C(O)OR, -N(R)C(O)R, -N(R)C(O)NR2, -N(R)C(NR)NR2, -N(R)NR2, -N(R)S(O)2NR2, - N(R)S(O)2R, -N=S(O)R2, -S(NR)(O)R, -N(R)S(O)R, -N(R)CN, or optionally substituted phenyl.

[0254] In some embodiments, R6represents independently for each occurrence oxo, halogen, -CN, -NO2, -OR, -OCR3, -SR, -NR2, -S(O)2R, -S(O)2NR2, -S(O)R, -S(O)NR2, - C(R)2OR, -C(O)R, -C(O)OR, -C(O)NR2, -C(O)N(R)OR, -OC(O)R, -OC(O)NR2, - N(R)C(O)OR, -N(R)C(O)R, -N(R)C(O)NR2, -N(R)C(NR)NR2, N(R)NR2, -N(R)S(O)2NR2, N(R)S(O)2R, -N=S(O)R2, -S(NR)(O)R, -N(R)S(O)R, or -N(R)CN.

[0255] In some embodiments, R6represents independently for each occurrence halogen, -CN, -OR, or -S(O)2R. In some embodiments, R6represents independently for each occurrence fluoro, -CN, or -OH.

[0256] In some embodiments, at least one R6is halogen. In some embodiments, at least one R6is fluoro. In some embodiments, at least two R6are fluoro. In some embodiments, at least one R6is methyl. In some embodiments, at least one R6is cyano.

[0257] In some embodiments, R2is selected from:

[0259] In some embodiments, R2is selected from:

[0260] In some embodiments, R2is selected from:

[0261] In some embodiments, R2is as described above and herein, wherein R2is substituted with p occurrences of R6. In some such embodiments, p is 0. In some such embodiments, p is 1. In some such embodiments, p is 2. In some such embodiments, p is 3. In some such embodiments, p is 4. In some such embodiments, p is 5.

[0262] In some embodiments, R2is as depicted in Table 1, below.

[0263] As described above and herein, RAis of either of the following structures:each of which is substituted by n occurrences of R3.

[0264] In some embodiments, RAisIn some embodiments, RAis

[0265] In some embodiments, RAis any of those depicted in Table 1 below.

[0266] As described above and herein, each RAis substituted by n occurrences of R3. In some embodiments, n is 0. In some embodiments, n is 1. In some embodiments, n is 2. In some embodiments, n is 3. In some embodiments, n is 4. In some embodiments, n is 5.

[0267] As descibed above and herein RBis phenyl, a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring; a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur; or a 5-6 membered monocyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; wherein RBis substituted with q occurrences of R2.

[0268] In some embodiments, RBis phenyl. In some embodiments, RBis a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring substituted with q occurrences of R2. In some embodiments, RBis a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfursubstituted with q occurrences of R2. In some embodiments, RBis a 5-6 membered monocyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur substituted with q occurrences of R2.

[0269] In some embodiments, RBis selected from:

[0270] As described above and herein, R3represents independently for each occurrence oxo, halogen, CN, -NO2, -OR, -OCR3, -SR, -NR2, -S(O)2R, -S(O)2NR2, -S(O)R, -S(O)NR2, - C(R)2OR, -C(O)R, -C(O)OR, -C(O)NR2, -C(O)N(R)OR, -OC(O)R, -OC(O)NR2, - N(R)C(O)OR, -N(R)C(O)R, -N(R)C(O)NR2, -N(R)C(NR)NR2, -N(R)NR2, -N(R)S(O)2NR2, - N(R)S(O)2R, -N=S(O)R2, -S(NR)(O)R, -N(R)S(O)R, -N(R)CN, -L2-R5, or an optionally substituted group selected from C1-6 aliphatic, C1-6 haloaliphatic, phenyl, naphthalenyl, a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring; a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur; or a 5-6 membered monocyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; an 8-10 membered bicyclic heteroaryl ring having 1-5 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 5-8 membered saturated or partially unsaturated bridged bicyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 6-11 membered saturated or partially unsaturated spirocyclic ring having 0-3 heteroatomsindependently selected from nitrogen, oxygen, and sulfur; or a 6-1 1 membered saturated or partially unsaturated bicyclic heterocyclic ring having 1-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; each of which is substituted with r instances of R; or: two R3groups on adjacent carbon atoms are taken together with the carbon atoms to which they attach to form an optionally substituted 4-7 membered saturated monocyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur, each of which is substituted with r instance of R.

[0271] In some embodiments, R3represents independently for each occurrence oxo, halogen, -CN, -NO2, -OR, -OCR3, -SR, -NR2, -S(O)2R, -S(O)2NR2, -S(O)R, -S(O)NR2, - C(R)2OR, -C(O)R, -C(O)OR, -C(O)NR2, -C(O)N(R)OR, -OC(O)R, -OC(O)NR2, - N(R)C(O)OR, -N(R)C(O)R, -N(R)C(O)NR2, -N(R)C(NR)NR2, -N(R)NR2, -N(R)S(O)2NR2, - N(R)S(O)2R, -N=S(O)R2, -S(NR)(O)R, -N(R)S(O)R, -N(R)CN, or -L2-R5.

[0272] In some embodiments, R3represents independently for each occurrence halogen. In some embodiments, R3is halogen. In some embodiments, R3is -CN. In some embodiments, at least one R3is fluoro. In some embodiments, at least one R3is chloro. In some embodiments, at least one R3is bromo. In some embodiments, at least one R3is -CN. In some embodiments, at least one R3is -OR. In some embodiments, wherein at least one R3is -OR, wherein R is Ci-6 alkyl. In some embodiments, at least one R3is -OR, wherein R is methyl, ethyl, or propyl. In some embodiments, at least one R3is -OR, wherein R is methyl. In some embodiments, at least one R3is -OR, wherein R is ethyl. In some embodiments, at least one R3is -OR, wherein R is propyl. In some embodiments, at least one R3is -OCRs, wherein at least one R is fluoro. In some embodiments, at least one R3is -NR2. In some embodiments, wherein at least one R3is -NR2, at least one R is hydrogen. In some embodiments, wherein at least one R3is -NR2, at least one R is methyl or ethyl. In some embodiments, wherein at least one R3is -NR2, at least one R is optionally substituted phenyl. In some embodiments, wherein at least one R3is -NR2,the two R groups on the same nitrogen are taken together with the nitrogen to form an optionally substituted 4-7 membered monocyclic saturated ring having 1-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, at least one R3is - N(R)S(O)2R. In some such embodiments, each R is independently hydrogen, C1-6 alkyl, C3-6 cycloalkyl, naphthalenyl, or a 5-membered heteroaryl ring having one, two, or three heteroatoms independently selected from nitrogen, oxygen, or sulfur.

[0273] In some embodiments, at least one R3is -L2-R5In some such embodiments, one, two, or three methylene units of L2are independently replaced by -O- or -Cy-. In some such embodiments, one, two, or three methylene units of L2are independently replaced by -N(R)- or - Cy-.

[0274] In some embodiments, at least one R3is a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some such embodiments, at least one R3is oxetane.

[0275] In some embodiments, at least one R3is -CF3, -CF2H, or -CFH2.

[0276] In some embodiments, R3represents independently for each occurrence C1-6 aliphatic or C1-6 haloaliphatic.

[0277] In some embodiments, R3represents independently for each occurrence phenyl or naphthal enyl.

[0278] In some embodiments, R3represents independently for each occurrence a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring.

[0279] In some embodiments, R3represents independently for each occurrence a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur.

[0280] In some embodiments, R3represents independently for each occurrence a 5-6 membered monocyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur.

[0281] In some embodiments, R3represents independently for each occurrence an 8-10 membered bicyclic heteroaryl ring having 1-5 heteroatoms independently selected from nitrogen, oxygen, and sulfur.

[0282] In some embodiments, R3represents independently for each occurrence a 5-8 membered saturated or partially unsaturated bridged bicyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur.

[0283] In some embodiments, R3represents independently for each occurrence a 6-11 membered saturated or partially unsaturated spirocyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur.

[0284] In some embodiments, R3represents independently for each occurrence or a 6-11 membered saturated or partially unsaturated bicyclic heterocyclic ring having 1-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur.

[0285] In some embodiments, two R3groups on adjacent carbon atoms are taken together with the carbon atoms to which they attach to form an optionally substituted 4-7 membered saturated monocyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, two R3groups on adjacent carbon atoms are taken together with the carbon atoms to which they attach to form an optionally substituted 4-7 membered saturated monocyclic ring having 1-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, two R3groups on adjacent carbon atoms are taken together with the carbon atoms to which they attach to form an optionally substituted 5 membered saturated monocyclic ring having 1-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, two R3groups on adjacent carbon atoms are taken together with the carbon atoms to which they attach to form an optionally substituted 4-7 membered saturated monocyclic ring having one heteroatom independently selected from oxygen.

[0286] In some embodiments, R3represents independently for each occurrence -L2-R5.

[0287] As described above and herein, each L2represents independently for each occurrence a Ci-6 bivalent saturated or unsaturated, straight or branched hydrocarbon chain wherein one, two, or three methylene units of the chain are optionally and independently replaced by -C(R)2-, -N(R)- , -N(R)C(O)-, -C(O)N(R)-, -N(R)S(O)2-, -S(O)2N(R)-, -O-, -C(O)-, -OC(O)-, -C(O)O-, -S-, -S(O)- , -S(O)2- or -Cy-. In some embodiments, each L2represents independently for each occurrence a Ci-6 bivalent saturated straight or branched hydrocarbon chain wherein one, two, or three methylene units of the chain are optionally and independently replaced by -C(R)2-, -N(R)-, - N(R)C(O)-, -C(O)N(R)-, -N(R)S(O)2-, -S(O)2N(R)-, -O-, -C(O)-, -OC(O)-, -C(O)O-, -S-, -S(O)-, -S(O)2- or -Cy-.

[0288] As described above and herein, -Cy- represents independently for each occurrence phenyl, a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring or a 3-7membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur.

[0289] In some embodiments, -Cy- represents independently for each occurrence phenyl.

[0290] In some embodiments, -Cy- represents independently for each occurrence a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring or a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, -Cy- represents independently for each occurrence a 3-7 membered saturated monocyclic carbocyclic ring. In some embodiments, -Cy- represents independently for each occurrence a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur.

[0291] As described above and herein, R5represents independently for each occurrence hydrogen, OR, C1-6 aliphatic, C1-6 haloaliphatic, or phenyl fused to a 5-6 membered saturated heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, R5represents independently for each occurrence hydrogen. In some embodiments, R5represents independently for each occurrence OR. In some such embodiments, R5represents independently for each occurrence OH or OMe. In some embodiments, R5represents independently for each occurrence C1-6 aliphatic or C1-6 haloaliphatic. In some embodiments, R5represents independently for each occurrence phenyl fused to a 5-6 membered saturated heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur.

[0292] In some embodiments, each R3group is independently substituted with r instances of R. In some embodiments, r is 0. In some embodiments, r is 1. In some embodiments, r is 2. In some embodiments, r is 3. In some embodiments, r is 4. In some embodiments, r is 5.

[0293] In some embodiments, R3is independently for each occurrence selected from:O H SNHO O ,

[0294] In some embodiments, R is -OMe or -OiPr.

[0295] In some embodiments, R3is as depicted in Table 1 below.

[0296] In some embodiments X is O. In some embodiments, X is S.

[0297] As defined above and herein, R is independently for each occurrence, hydrogen, -CN, halogen, or an optionally substituted group selected from C1-6aliphatic; phenyl; naphthalenyl; a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring; a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 5-6 membered monocyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; an 8-10 membered bicyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 7-12 membered saturated or partially unsaturated bicyclic heterocyclic ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 5-8 membered saturated or partially unsaturated bridged bicyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 6-10 membered saturated or partially unsaturated spirocyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 6-11 membered saturated or partially unsaturated bicyclic carbocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur; or: two R groups on the same nitrogen are taken together with the nitrogen to form an optionally substituted 4-7 membered monocyclic saturated, partially unsaturated, or heteroaryl ring having, in addition to the nitrogen, 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; an 8-10 membered bicyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 7-12 membered saturated or partially unsaturated bicyclic heterocyclic ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur.

[0298] In some embodiments, R is independently for each occurrence hydrogen, -CN, halogen, or an optionally substituted Ci-6 aliphatic. In some embodiments, R is independently for each occurrence hydrogen. In some embodiments, R is fluoro. In some embodiments, R is independently for each occurrence an optionally substituted Ci-6 alkyl. In some such embodiments, R is methyl.

[0299] In some embodiments, R is independently for each occurrence an optionally substituted group selected from phenyl or naphthal enyl.

[0300] In some embodiments, R is independently for each occurrence an optionally substituted group selected from a a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring; a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 5-6 memberedmonocyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; an 8-10 membered bicyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 7-12 membered saturated or partially unsaturated bicyclic heterocyclic ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 5-8 membered saturated or partially unsaturated bridged bicyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 6-10 membered saturated or partially unsaturated spirocyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 6-11 membered saturated or partially unsaturated bicyclic carbocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur.

[0301] In some embodiments, two R groups on the same nitrogen are taken together with the nitrogen to form an optionally substituted 4-7 membered monocyclic saturated, partially unsaturated, or heteroaryl ring having, in addition to the nitrogen, 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; an 8-10 membered bicyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 7-12 membered saturated or partially unsaturated bicyclic heterocyclic ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur.

[0302] In some embodiments, a compound of the present disclosure is represented by any of the following or a pharmaceutically acceptable salt thereof:I-c-1 I-d-1 wherein RA, R1, X, L, and RBare as defined above and described herein.

[0303] In some embodiments, a compound of the present disclosure is represented by the following or a pharmaceutically acceptable salt thereofI-e-1 wherein RA, R1, X, L, and RBare as defined above and described herein.

[0304] In some embodiments, a compound of the present disclosure is represented by either of the following or a pharmaceutically acceptable salt thereofI-f-1 I-g-1 wherein RA, R1, L, and RBare as defined above and described herein.

[0305] In some embodiments, a compound of the present disclosure is represented by any of the following or a pharmaceutically acceptable salt thereofI-k-1 1-1-1 wherein R1, R3, L, and RBare as defined above and described herein. In some such embodiments,A'" / selected from F

[0306] In some embodiments, a compound of the present disclosure is represented by the following, or a pharmaceutically acceptable salt thereof:I-m-1 wherein R1, R2, and RAare as defined above and described herein.In some embodiments, a compound is of any of formulae I-a-1 - I-m-1 above, wherein n is 0. In some embodiments, a compound is of any of formulae I-a-1 - I-m-1 above, wherein n is 1.

[0307] In certain embodiments, the compound is a compound in Table 1. In certain embodiments, the compound is a compound in Table 1, or a pharmaceutically acceptable salt thereof. In certain embodiments, the compound is a compound selected from Compound II- 1 to II- 70 of Table 1, below, or a pharmaceutically acceptable salt thereof. In certain embodiments, the compound is a compound selected from Compound II- 1 to 11-70 of Table 1.TABLE 1.ʼnllII. Therapeutic ApplicationsC-Kit Kinase Mediated Diseases and Disorders

[0308] It is contemplated that compounds described herein, such those of Formula I, provide therapeutic benefits to subjects suffering from a c-kit kinase-mediated disease, disorder or condition. Accordingly, one aspect of the invention provides a method of treating a disorder associated with c-kit kinase in a subject. The method comprises administering a therapeutically effective amount of a compound described herein, such as a compound of Formula I, to a subject in need thereof to treat the disorder. In certain embodiments, the compound is a compound of any of Formulae I, II, I-a, I-b, I-c, I-d, I-e, I-f, I-g, I-h, I-i, I-j, I-k, 1-1, or I-m defined by one of the embodiments described above.

[0309] It is contemplated that compounds described herein, such those of Formula 1-1, provide therapeutic benefits to subjects suffering from a c-kit kinase-mediated disease, disorder or condition. Accordingly, one aspect of the invention provides a method of treating a disorder associated with c-kit kinase in a subject. The method comprises administering a therapeutically effective amount of a compound described herein, such as a compound of Formula 1-1, to a subject in need thereof to treat the disorder. In certain embodiments, the compound is a compound of any of Formulae 1-1, 11-1, I-a-1, I-b- 1, 1-c-1, 1-d-1, 1-e-1, 1-f-1, 1-g-1, 1-h-1, 1-i-1, 1- j-1, I-k- 1 , 1-1-1, or I-m-1 defined by one of the embodiments described above.

[0310] In some embodiments, the c-kit kinase-mediated disease, disorder or condition is associated with wild-type c-kit kinase. In some embodiments, the c-kit kinase-mediated disease, disorder or condition is associated with mutant c-kit kinase.

[0311] In some embodiments, the kit mutation is selected from D419, D816Y, D816F, N822, V559, K558Q, I517P, Duplication 572-573, V559A, V559D, W557R, V560G, L576P, K642E, D820V, V560G, D52N, D816V, D816, V825A, E490K, W557R, V559A, V560Del, V560G, K642E, V654A, D816H, D820E, A829P, T417, Y418, D419, A502, K5091, V530I, F552C, A533D, V560, ITD, V559D, K704, N705, S715, 1748T, L773S, V8251, and D816N.

[0312] Non-limiting examples of the c-kit kinase-mediated disease include Acute Myeloid Leukemia, Mastocytosis, AMI-HMCI-cell line, GIST, Melanoma, Myeloproliferative Disease, Renal Cell Carcinoma, Papillary renal carcinoma, Sinonasal NK / Tcell Lymphoma, ThymicCarcinoma, Acute Lymphoblastic leukemia, Germ cell tumor, Acute Myelogenous Leukemia, and Extranodal NK / T cell lymphoma.

[0313] The method may be further characterized according to the c-kit kinase mediated disease or disorder that is to be treated in the patient. In some embodiments, the c-kit kinase mediated disease or disorder is a mast-cell associated disease, a respiratory disease, an inflammatory disorder, an autoimmune disorder, a metabolic disease, a fibrotic disease, a dermatological disease, an allergic disease, a cardiovascular disease, or a neurological disorder. In some embodiments, the c-kit kinase mediated disease or disorder is a mast-cell associated disease. In some embodiments, the c-kit kinase mediated disease or disorder is an inflammatory disorder. In some embodiments, the c-kit kinase mediated disease or disorder is an autoimmune disorder. In some embodiments, the c-kit kinase mediated disease or disorder is a metabolic disease. In some embodiments, the c-kit kinase mediated disease or disorder is a fibrotic disease. In some embodiments, the c-kit kinase mediated disease or disorder is a dermatological disease. In some embodiments, the c-kit kinase mediated disease or disorder is an allergic disease. In some embodiments, the c-kit kinase mediated disease or disorder is a cardiovascular disease. In some embodiments, the c-kit kinase mediated disease or disorder is a neurological disorder.

[0314] In some embodiments, the disease or disorder is asthma, allergic rhinitis, pulmonary arterial hypertension (PAH), primary pulmonary hypertension (PPH), pulmonary fibrosis, hepatic fibrosis, cardiac fibrosis, scleroderma, irritable bowel syndrome (IBS), inflammatory bowel disease (IBD), urticaria, dermatosis, atopic dermatitis, allergic contact dermatitis, rheumatoid arthritis, multiple sclerosis, melanoma, a gastrointestinal stromal tumor, a mast cell tumor, mastocytosis, anaphylactic syndrome, food allergy, chronic rhinosinusitis, type I diabetes, type II diabetes, systemic sclerosis, allergic keratoconjunctivitis, vernal keratoconjunctivitis, Crohn’s disease, or systemic and cutaneous lupus erythematosus and dermatomyositis. In some embodiments, the disease or disorder is asthma. In some embodiments, the disease or disorder is allergic rhinitis. In some embodiments, the disease or disorder is pulmonary arterial hypertension (PAH). In some embodiments, the disease or disorder is primary pulmonary hypertension (PPH). In some embodiments, the disease or disorder is pulmonary fibrosis. In some embodiments, the disease or disorder is hepatic fibrosis. In some embodiments, the disease or disorder is cardiac fibrosis. In some embodiments, the disease or disorder is scleroderma. In some embodiments, the disease or disorder is irritable bowel syndrome (IBS). In someembodiments, the disease or disorder is inflammatory bowel disease (IBD). In some embodiments, the disease or disorder is urticaria. In some embodiments, the disease or disorder is dermatosis. In some embodiments, the disease or disorder is atopic dermatitis. In some embodiments, the disease or disorder is allergic contact dermatitis. In some embodiments, the disease or disorder is rheumatoid arthritis. In some embodiments, the disease or disorder is multiple sclerosis. In some embodiments, the disease or disorder is melanoma. In some embodiments, the disease or disorder is a gastrointestinal stromal tumor. In some embodiments, the disease or disorder is a mast cell tumor. In some embodiments, the disease or disorder is mastocytosis. In some embodiments, the disease or disorder is anaphylactic syndrome. In some embodiments, the disease or disorder is food allergy. In some embodiments, the disease or disorder is chronic rhinosinusitis. In some embodiments, the disease or disorder is type I diabetes. In some embodiments, the disease or disorder is type II diabetes. In some embodiments, the disease or disorder is systemic sclerosis. In some embodiments, the disease or disorder is allergic keratoconjunctivitis. In some embodiments, the disease or disorder is vernal keratoconjunctivitis. In some embodiments, the disease or disorder is Crohn’s disease. In some embodiments, the disease or disorder is systemic and cutaneous lupus erythematosus and dermatomyositis.

[0315] In some embodiments, the c-kit mediated disease or disorder is urticaria.

[0316] In some embodiments, the disease or disorder is mast cell gastrointestinal disease, prurigo nodularis, allergic conjunctivitis, eosinophilic esophagitis, mast cell activation syndrome, eosinophilic gastritis and / or eosinophilic duodenitis (EG / EoD), ulcerative colitis, eosinophilic gastritis (EG), or eosinophilic colitis (EC). In some embodiments, the disease or disorder is mast cell gastrointestinal disease. In some embodiments, the disease or disorder is prurigo nodularis. In some embodiments, the disease or disorder is allergic conjunctivitis. In some such embodiments, the allergic conjunctivitis is seasonal conjunctivitis. In some such embodiments, the allergic conjunctivitis is perennial conjunctivitis. In some embodiments, the disease or disorder is eosinophilic esophagitis. In some embodiments, the disease or disorder is mast cell activation syndrome. In some embodiments, the disease or disorder is eosinophilic gastritis and / or eosinophilic duodenitis (EG / EoD). In some embodiments, the disease or disorder is ulcerative colitis.

[0317] In some embodiments, the present invention provides a method for treating a c-kit kinase mediated disorder comprising the step of administering to a patient in need thereof a therapeutically effective compound of the present invention, or pharmaceutically acceptable composition thereof.

[0318] In some aspects and embodiments, provided herein are methods of treating, reducing the severity of, delaying the onset of, or inhibiting the progress of a disease or disorder, or one or more symptoms thereof of a disease or disorder characterized by or associated with increased c- kit kinase, comprising the step of administering to a patient in need thereof a therapeutically effective amount of a compound of the present invention, or pharmaceutically acceptable composition thereof. In some aspects and embodiments, provided herein are methods of treating, reducing the severity of, delaying the onset of, or inhibiting the progress of a disease or disorder, or one or more symptoms thereof of a disease or disorder in which inhibition of c-kit kinase activity is beneficial, comprising the step of administering to a patient in need thereof a therapeutically effective amount of a compound of the present invention, or pharmaceutically acceptable composition thereof.

[0319] As used herein, the terms "increased," "elevated," or "enhanced," are used interchangeably and encompass any measurable increase in a biological function and / or biological activity and / or a concentration. For example, an increase can be by at least about 10%, about 15%, about 20%, about 25%, about 30%, about 35%, about 40%, about 45%, about 50%, about 55%, about 60%, about 65%, about 70%, about 75%, about 80%, about 85%, about 90%, about 95%, about 96%, about 97%, about 98%, about 99%, about 100%, about 2-fold, about 3- fold, about 4-fold, about 5-fold, about 6-fold, about 7-fold, about 8-fold, about 9-fold, about 10- fold, about 20-fold, about 25-fold, about 50-fold, about 100-fold, or higher, relative to a control or baseline amount of a function, or activity, or concentration.

[0320] In certain embodiments, the subject is a human. In certain embodiments, the subject is an adult human. In certain embodiments, the subject is a pediatric human. In certain embodiments, the subject is a companion animal. In certain embodiments, the subject is a canine, feline, or equine.

[0321] Another aspect of the invention provides for the use of a compound described herein (such as a compound of Formula I, or other compounds in Section I) in the manufacture of amedicament. In certain embodiments, the medicament is for treating a disorder described herein, such as a c-kit kinase mediated disorder.

[0322] Another aspect of the invention provides for the use of a compound described herein (such as a compound of Formula I, or other compounds in Section I) for treating a medical disorder, such as a medical disorder described herein (for example, a c-kit kinase mediated disorder).

[0323] Another aspect of the invention provides for the use of a compound described herein (such as a compound of Formula 1-1, or other compounds in Section I) in the manufacture of a medicament. In certain embodiments, the medicament is for treating a disorder described herein, such as a c-kit kinase mediated disorder.

[0324] Another aspect of the invention provides for the use of a compound described herein (such as a compound of Formula 1-1, or other compounds in Section I) for treating a medical disorder, such as a medical disorder described herein (for example, a c-kit kinase mediated disorder).II. Pharmaceutical Compositions and Dosing Considerations

[0325] As used herein, the terms “combination,” “combined,” and related terms refer to the simultaneous or sequential administration of therapeutic agents in accordance with this disclosure. For example, a described compound may be administered with another therapeutic agent simultaneously or sequentially in separate unit dosage forms or together in a single unit dosage form. Accordingly, the present disclosure provides a single unit dosage form comprising a described compound, an additional therapeutic agent, and a pharmaceutically acceptable carrier, adjuvant, or vehicle. Two or more agents are typically considered to be administered “in combination” when a patient or individual is simultaneously exposed to both agents. In many embodiments, two or more agents are considered to be administered “in combination” when a patient or individual simultaneously shows therapeutically relevant levels of the agents in a particular target tissue or sample (e.g., in brain, in serum, etc.).

[0326] When the compounds of this disclosure are administered in combination therapies with other agents, they may be administered sequentially or concurrently to the patient. Alternatively, pharmaceutical or prophylactic compositions according to this disclosure may comprise a combination of a compound of Formula I and another therapeutic or prophylacticagent. Alternatively, pharmaceutical or prophylactic compositions according to this disclosure may comprise a combination of a compound of Formula 1-1 and another therapeutic or prophylactic agent. Additional therapeutic agents that are normally administered to treat a particular disease or condition may be referred to as “agents appropriate for the disease, or condition, being treated.”

[0327] In some embodiments, the subject method includes administering a therapeutically effective amount of one or more additional active agents. By combination therapy is meant that a c-kit inhibiting compound can be used in a combination with another therapeutic agent to treat a single disease or condition. In particular embodiments, a compound of the present disclosure is administered concurrently with the administration of another therapeutic agent, which can be administered as a component of a composition including the compound of the present disclosure or as a component of a different composition.

[0328] The subject compounds can be administered in combination with other therapeutic agents in a variety of therapeutic applications. Therapeutic applications of interest for combination therapy include those applications in which activity of a target c-kit kinase is the cause or a compounding factor in disease progression. As such, the subject compounds find use in combination therapies in which the inhibition of a target c-kit kinase in the subject is desired. The compounds utilized in the compositions and methods of this disclosure may also be modified by appending appropriate functionalities to enhance selective biological properties. Such modifications are known in the art and include those, which increase biological penetration into a given biological system (e.g., blood, lymphatic system, or central nervous system), increase oral availability, increase solubility to allow administration by injection, alter metabolism and / or alter rate of excretion.

[0329] The term “treatment” is used interchangeably herein with the term “therapeutic method” and refers to both 1) therapeutic treatments or measures that cure, slow down, lessen symptoms of, and / or halt progression of a diagnosed pathologic conditions, disease or disorder, and 2) and prophylactic / preventative measures. Those in need of treatment may include individuals already having a particular medical disease or disorder as well as those who may ultimately acquire the disorder (i.e., those at risk or needing preventive measures).

[0330] The term “subject” as used herein refers to any individual or patient to which the subject methods are performed. Generally, the subject is human, although as will be appreciated by those in the art, the subject may be an animal.

[0331] The terms “therapeutically effective amount”, “effective dose”, “therapeutically effective dose”, “effective amount,” or the like refer to the amount of a subject compound that will elicit the biological or medical response in a tissue, system, animal or human that is being sought by administering said compound. Generally, the response is either amelioration of symptoms in a patient or a desired biological outcome. In some embodiments, such amount should be sufficient to inhibit a c-kit kinase.

[0332] Unless specified otherwise, the term “about” refers to within ±10% of the stated value. The invention encompasses embodiments where the value is within ±9%, ±8%, ±7%, ±6%, ±5%, ±4%, ±3%, ±2%, or ±1% of the stated value.

[0333] In some embodiments, an effective amount of a c-kit inhibiting compound is an amount that ranges from about 50 ng / ml to 50 pg / ml (e.g., from about 50 ng / ml to 40 pg / ml, from about 30 ng / ml to 20 pg / ml, from about 50 ng / ml to 10 μg / ml, from about 50 ng / ml to 1 μg / ml, from about 50 ng / ml to 800 ng / ml, from about 50 ng / ml to 700 ng / ml, from about 50 ng / ml to 600 ng / ml, from about 50 ng / ml to 500 ng / ml, from about 50 ng / ml to 400 ng / ml, from about 60 ng / ml to 400 ng / ml, from about 70 ng / ml to 300 ng / ml, from about 60 ng / ml to 100 ng / ml, from about 65 ng / ml to 85 ng / ml, from about 70 ng / ml to 90 ng / ml, from about 200 ng / ml to 900 ng / ml, from about 200 ng / ml to 800 ng / ml, from about 200 ng / ml to 700 ng / ml, from about 200 ng / ml to 600 ng / ml, from about 200 ng / ml to 500 ng / ml, from about 200 ng / ml to 400 ng / ml, or from about 200 ng / ml to about ng / ml).

[0334] In some embodiments, an effective amount of a c-kit inhibiting compound is an amount that ranges from about 10 pg to 100 mg, e.g., from about 10 pg to 50 pg, from about 50 pg to 150 pg, from about 150 pg to 250 pg, from about 250 pg to 500 pg, from about 500 pg to 750 pg, from about 750 pg to 1 ng, from about 1 ng to 10 ng, from about 10 ng to 50 ng, from about 50 ng to 150 ng, from about 150 ng to 250 ng, from about 250 ng to 500 ng, from about 500 ng to 750 ng, from about 750 ng to 1 mg, from about 1 pg to 10 pg, from about 10 pg to 50 pg, from about 50 pg to 150 pg, from about 150 pg to 250 pg, from about 250 pg to 500 pg, from about 500 pg to 750 pg, from about 750 pg to 1 mg, from about 1 mg to 50 mg, from about 1 mg to 100 mg, or from about 50 mg to 100 mg. The amount can be a single dose amount or can be atotal daily amount. The total daily amount can range from about 10 pg to 100 mg, or can range from about 100 mg to 500 mg, or can range from about 500 mg to 1000 mg.

[0335] Also disclosed herein are pharmaceutical compositions including compounds as disclosed herein e.g., compounds of Formula I and pharmaceutically acceptable salts thereof. Also disclosed herein are pharmaceutical compositions including compounds as disclosed herein e.g., compounds of Formula 1-1 and pharmaceutically acceptable salts thereof.

[0336] The term “pharmaceutically acceptable carrier” refers to a non-toxic carrier that may be administered to a patient, together with a compound of this disclosure, and which does not destroy the pharmacological activity thereof. Pharmaceutically acceptable carriers that may be used in these compositions include, but are not limited to, ion exchangers, alumina, aluminum stearate, lecithin, serum proteins such as human serum albumin, buffer substances such as phosphates, glycine, sorbic acid, potassium sorbate, partial glyceride mixtures of saturated vegetable fatty acids, water, salts or electrolytes such as protamine sulfate, disodium hydrogen phosphate, potassium hydrogen phosphate, sodium chloride, zinc salts, colloidal silica, magnesium trisilicate, polyvinyl pyrrolidone, cellulose-based substances, polyethylene glycol, sodium carboxymethylcellulose, polyacrylates, waxes, polyethylene-polyoxypropylene-block polymers, polyethylene glycol and wool fat.

[0337] In pharmaceutical compositions comprising only the compounds described herein as the active component, methods for administering these compositions may additionally comprise the step of administering to the subject an additional agent or therapy. Such therapies include, but are not limited to, an anemia therapy, a diabetes therapy, a hypertension therapy, a cholesterol therapy, neuropharmacologic drugs, drugs modulating cardiovascular function, drugs modulating inflammation, immune function, production of blood cells, hormones and antagonists, drugs affecting gastrointestinal function, chemotherapeutics of microbial diseases, and / or chemotherapeutics of neoplastic disease. Other pharmacological therapies can include any other drug or biologic found in any drug class. For example, other drug classes can comprise allergy / cold / ENT therapies, analgesics, anesthetics, anti-inflammatories, antimicrobials, antivirals, asthma / pulmonary therapies, cardiovascular therapies, dermatology therapies, endocrine / metabolic therapies, gastrointestinal therapies, cancer therapies, immunology therapies, neurologic therapies, ophthalmic therapies, psychiatric therapies or rheumatologic therapies. Other examples of agents or therapies that can be administered withthe compounds described herein include a matrix metalloprotease inhibitor, a lipoxygenase inhibitor, a cytokine antagonist, an immunosuppressant, a cytokine, a growth factor, an immunomodulator, a prostaglandin or an anti-vascular hyperproliferation compound.

[0338] The term “therapeutically effective amount” as used herein refers to the amount of active compound or pharmaceutical agent that elicits the biological or medicinal response in a tissue, system, animal, individual or human that is being sought by a researcher, veterinarian, medical doctor or other clinician, which includes one or more of the following: (1) Preventing the disease; for example, preventing a disease, condition or disorder in an individual that may be predisposed to the disease, condition or disorder but does not yet experience or display the pathology or symptomatology of the disease, (2) Inhibiting the disease; for example, inhibiting a disease, condition or disorder in an individual that is experiencing or displaying the pathology or symptomatology of the disease, condition or disorder (i.e., arresting further development of the pathology and / or symptomatology), and (3) Ameliorating the disease; for example, ameliorating a disease, condition or disorder in an individual that is experiencing or displaying the pathology or symptomatology of the disease, condition or disorder (i.e., reversing the pathology and / or symptomatology).Pharmaceutically Acceptable Compositions

[0339] The compounds and compositions, according to the method of the present disclosure, are administered using any amount and any route of administration effective for treating or lessening the severity of a disorder provided above. The exact amount required will vary from subject to subject, depending on the species, age, and general condition of the subject, the severity of the infection, the particular agent, its mode of administration, and the like. Compounds of the disclosure are preferably formulated in dosage unit form for ease of administration and uniformity of dosage. The expression “dosage unit form” as used herein refers to a physically discrete unit of agent appropriate for the patient to be treated. It will be understood, however, that the total daily usage of the compounds and compositions of the present disclosure will be decided by the attending physician within the scope of sound medical judgment. The specific effective dose level for any particular patient or organism will depend upon a variety of factors including the disorder being treated and the severity of the disorder; the activity of the specific compound employed; the specific compositionemployed; the age, body weight, general health, sex and diet of the patient; the time of administration, route of administration, and rate of excretion of the specific compound employed; the duration of the treatment; drugs used in combination or coincidental with the specific compound employed, and like factors well known in the medical arts.

[0340] Pharmaceutically acceptable compositions of this disclosure can be administered to humans and other animals orally, rectally, parenterally, intraci sternally, intravaginally, intraperitoneally, topically (as by powders, ointments, or drops), bucally, as an oral or nasal spray, or the like, depending on the severity of the infection being treated. In certain embodiments, the compounds of the disclosure are administered orally or parenterally at dosage levels of about 0.01 mg / kg to about 50 mg / kg and preferably from about 1 mg / kg to about 25 mg / kg, of subject body weight per day, one or more times a day, to obtain the desired therapeutic effect.

[0341] Liquid dosage forms for oral administration include, but are not limited to, pharmaceutically acceptable emulsions, microemulsions, solutions, suspensions, syrups and elixirs. In addition to the active compounds, the liquid dosage forms may contain inert diluents commonly used in the art such as, for example, water or other solvents, solubilizing agents and emulsifiers such as ethyl alcohol, isopropyl alcohol, ethyl carbonate, ethyl acetate, benzyl alcohol, benzyl benzoate, propylene glycol, 1,3 -butylene glycol, dimethyl formamide, oils (in particular, cottonseed, groundnut, corn, germ, olive, castor, and sesame oils), glycerol, tetrahydrofurfuryl alcohol, polyethylene glycols and fatty acid esters of sorbitan, and mixtures thereof. Besides inert diluents, the oral compositions can also include adjuvants such as wetting agents, emulsifying and suspending agents, sweetening, flavoring, and perfuming agents.

[0342] Injectable preparations, for example, sterile injectable aqueous or oleaginous suspensions may be formulated according to the known art using suitable dispersing or wetting agents and suspending agents. The sterile injectable preparation may also be a sterile injectable solution, suspension or emulsion in a nontoxic parenterally acceptable diluent or solvent, for example, as a solution in 1,3 -butanediol. Among the acceptable vehicles and solvents that may be employed are water, Ringer's solution, U.S.P. and isotonic sodium chloride solution. In addition, sterile, fixed oils are conventionally employed as a solvent or suspending medium. Forthis purpose any bland fixed oil can be employed including synthetic mono- or diglycerides. In addition, fatty acids such as oleic acid are used in the preparation of injectables.

[0343] Injectable formulations can be sterilized, for example, by filtration through a bacterial- retaining filter, or by incorporating sterilizing agents in the form of sterile solid compositions which can be dissolved or dispersed in sterile water or other sterile injectable medium prior to use.

[0344] In order to prolong the effect of a compound of the present disclosure, it is often desirable to slow the absorption of the compound from subcutaneous or intramuscular injection. This may be accomplished by the use of a liquid suspension of crystalline or amorphous material with poor water solubility. The rate of absorption of the compound then depends upon its rate of dissolution that, in turn, may depend upon crystal size and crystalline form. Alternatively, delayed absorption of a parenterally administered compound form is accomplished by dissolving or suspending the compound in an oil vehicle. Injectable depot forms are made by forming microencapsule matrices of the compound in biodegradable polymers such as polylactidepolyglycolide. Depending upon the ratio of compound to polymer and the nature of the particular polymer employed, the rate of compound release can be controlled. Examples of other biodegradable polymers include poly(orthoesters) and poly(anhydrides). Depot injectable formulations are also prepared by entrapping the compound in liposomes or microemulsions that are compatible with body tissues.

[0345] Compositions for rectal or vaginal administration are preferably suppositories which can be prepared by mixing the compounds of this disclosure with suitable non-irritating excipients or carriers such as cocoa butter, polyethylene glycol or a suppository wax which are solid at ambient temperature but liquid at body temperature and therefore melt in the rectum or vaginal cavity and release the active compound.

[0346] Solid dosage forms for oral administration include capsules, tablets, pills, powders, and granules. In such solid dosage forms, the active compound is mixed with at least one inert, pharmaceutically acceptable excipient or carrier such as sodium citrate or dicalcium phosphate and / or a) fillers or extenders such as starches, lactose, sucrose, glucose, mannitol, and silicic acid, b) binders such as, for example, carboxymethylcellulose, alginates, gelatin, polyvinylpyrrolidinone, sucrose, and acacia, c) humectants such as glycerol, d) disintegrating agents such as agar — agar, calcium carbonate, potato or tapioca starch, alginic acid, certainsilicates, and sodium carbonate, e) solution retarding agents such as paraffin, f absorption accelerators such as quaternary ammonium compounds, g) wetting agents such as, for example, cetyl alcohol and glycerol monostearate, h) absorbents such as kaolin and bentonite clay, and i) lubricants such as talc, calcium stearate, magnesium stearate, solid polyethylene glycols, sodium lauryl sulfate, and mixtures thereof. In the case of capsules, tablets and pills, the dosage form may also comprise buffering agents.

[0347] Solid compositions of a similar type may also be employed as fillers in soft and hard-filled gelatin capsules using such excipients as lactose or milk sugar as well as high molecular weight polyethylene glycols and the like. The solid dosage forms of tablets, dragees, capsules, pills, and granules can be prepared with coatings and shells such as enteric coatings and other coatings well known in the pharmaceutical formulating art. They may optionally contain opacifying agents and can also be of a composition that they release the active ingredient(s) only, or preferentially, in a certain part of the intestinal tract, optionally, in a delayed manner. Examples of embedding compositions that can be used include polymeric substances and waxes. Solid compositions of a similar type may also be employed as fillers in soft and hard-filled gelatin capsules using such excipients as lactose or milk sugar as well as high molecular weight pol ethylene glycols and the like.

[0348] The active compounds can also be in micro-encapsulated form with one or more excipients as noted above. The solid dosage forms of tablets, dragees, capsules, pills, and granules can be prepared with coatings and shells such as enteric coatings, release controlling coatings and other coatings well known in the pharmaceutical formulating art. In such solid dosage forms the active compound may be admixed with at least one inert diluent such as sucrose, lactose or starch. Such dosage forms may also comprise, as is normal practice, additional substances other than inert diluents, e.g., tableting lubricants and other tableting aids such a magnesium stearate and microcrystalline cellulose. In the case of capsules, tablets and pills, the dosage forms may also comprise buffering agents. They may optionally contain opacifying agents and can also be of a composition that they release the active ingredient(s) only, or preferentially, in a certain part of the intestinal tract, optionally, in a delayed manner. Examples of embedding compositions that can be used include polymeric substances and waxes.

[0349] Dosage forms for topical or transdermal administration of a compound of this disclosure include ointments, pastes, creams, lotions, gels, powders, solutions, sprays, inhalants or patches. The active component is admixed under sterile conditions with a pharmaceutically acceptable carrier and any needed preservatives or buffers as may be required. Ophthalmic formulation, ear drops, and eye drops are also contemplated as being within the scope of this disclosure. Additionally, the present disclosure contemplates the use of transdermal patches, which have the added advantage of providing controlled delivery of a compound to the body. Such dosage forms can be made by dissolving or dispensing the compound in the proper medium. Absorption enhancers can also be used to increase the flux of the compound across the skin. The rate can be controlled by either providing a rate controlling membrane or by dispersing the compound in a polymer matrix or gel.

[0350] All features of each of the aspects of the disclosure apply to all other aspects mutatis mutandis. Each of the references referred to herein, including but not limited to patents, patent applications and journal articles, is incorporated by reference herein as though fully set forth in its entirety.

[0351] In order that the disclosure described herein may be more fully understood, the following examples are set forth. It should be understood that these examples are for illustrative purposes only and are not to be construed as limiting this disclosure in any manner.ENUMERATED EMBODIMENTS

[0352] Embodiment 1. A compound represented by Formula 1-1 :(1-1) or a pharmaceutically acceptable salt thereof; wherein:RAis of either of the following structures:each of which is substituted by n occurrences of R3;R3represents independently for each occurrence oxo, halogen, -CN, -NO2, -OR, -OCR3, -SR, -NR2, -S(O)2R, -S(O)2NR2, -S(O)R, -S(O)NR2, -C(R)2OR, -C(O)R, -C(O)OR, -C(O)NR2, -C(O)N(R)OR, -OC(O)R, -OC(O)NR2, -N(R)C(O)OR, -N(R)C(O)R, -N(R)C(O)NR2, -N(R)C(NR)NR2, -N(R)NR2, -N(R)S(O)2NR2, -N(R)S(O)2R, -N=S(O)R2, -S(NR)(O)R, - N(R)S(O)R, -N(R)CN, -L2-R5, or an optionally substituted group selected from C1-6 aliphatic, C1-6 haloaliphatic, phenyl, naphthalenyl, a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring; a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur; or a 5-6 membered monocyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; an 8-10 membered bicyclic heteroaryl ring having 1- 5 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 5-8 membered saturated or partially unsaturated bridged bicyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 6-11 membered saturated or partially unsaturated spirocyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; or a 6-11 membered saturated or partially unsaturated bicyclic heterocyclic ring having 1- 3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; each of which is substituted with r instances of R; or: two R3groups on adjacent carbon atoms are taken together with the carbon atoms to which they attach to form an optionally substituted 4-7 membered saturated monocyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur, substituted with r instances of R;L2represents independently for each occurrence a C1-6 bivalent saturated or unsaturated, straight or branched hydrocarbon chain wherein one, two, or three methylene units of the chain are optionally and independently replaced by -C(R)2-, -N(R)-, -N(R)C(O)-, - C(O)N(R)-, -N(R)S(O)2-, -S(O)2N(R)-, -O-, -C(O)-, -OC(O)-, -C(O)O-, -S-, -S(O)-, -S(O)2- or - Cy-;Cy represents independently for each occurrence phenyl, a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring or a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur;R5represents independently for each occurrence hydrogen, OR, Ci-6 aliphatic, Ci-6 haloaliphatic, or phenyl fused to a 5-6 membered saturated heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur;X is O or S;R1represents independently for each occurrence halogen, -CN, -OR, -NR2, -C(O)R, -C(O)OR, - C(0)NR2, C1-6 alkyl, or C 1-6 haloalky 1;L is a bond or -N(R)-, -N(R)C(O)-, -N(R)C(O)N(R)-, -C(O)N(R)-, -N(R)S(O)2-, -S(O)2N(R)-, - O-, -C(O)-, -OC(O)-, -C(O)O-, -S-, -S(O)-, or-S(O)2-;RBis phenyl, a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring; a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur; or a 5-6 membered monocyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; wherein RBis substituted with q occurrences of R2;R2represents independently for each occurrence halogen, oxo, Ci-6 aliphatic, phenyl, a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring; a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur; or a 5-6 membered monocyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; an 8-10 membered bicyclic heteroaryl ring having 1-5 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 5-10 membered saturated or partially unsaturated bridged bicyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 6-11 membered saturated or partially unsaturated spirocyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; or a 6-11 membered saturated or partially unsaturated bicyclic heterocyclic ring having 1-3 heteroatomsindependently selected from nitrogen, oxygen, and sulfur, or I.'-R4; wherein R2is substituted with p occurrences of R6;L1represents independently for each occurrence a Ci-2bivalent saturated straight or branched hydrocarbon chain wherein one methylene unit of the chain is optionally and independently replaced by -C(R)2-, -N(R)-, -N(R)C(O)-, -C(O)N(R)-, -N(R)S(O)2-, -S(O)2N(R)-, -O-, -C(O)-, - OC(O)-, -C(O)O-, -S-, -S(O)-, or-S(O)2-;R4represents independently for each occurrence a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring, or a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur;R6represents independently for each occurrence oxo, halogen, -CN, -NO2, -OR, -OCRs, -SR, -NR2, -S(O)2R, -S(O)2NR2, -S(O)R, -S(O)NR2, -C(R)2OR, -C(O)R, -C(O)OR, -C(O)NR2, -C(O)N(R)OR, -OC(O)R, -OC(O)NR2, -N(R)C(O)OR, -N(R)C(O)R, -N(R)C(O)NR2, -N(R)C(NR)NR2, -N(R)NR2, -N(R)S(O)2NR2, -N(R)S(O)2R, -N=S(O)R2, -S(NR)(O)R, - N(R)S(O)R, -N(R)CN, or optionally substituted phenyl; each R is independently hydrogen, -CN, halogen, or an optionally substituted group selected from Ci-6 aliphatic; phenyl; naphthalenyl; a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring; a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 5-6 membered monocyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; an 8-10 membered bicyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 7-12 membered saturated or partially unsaturated bicyclic heterocyclic ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 5-8 membered saturated or partially unsaturated bridged bicyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 6-10 membered saturated or partially unsaturated spirocyclic ring having 0- 3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 6-11 membered saturated or partially unsaturated bicyclic carbocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur; or:two R groups on the same nitrogen are taken together with the nitrogen to form an optionally substituted 4-7 membered monocyclic saturated, partially unsaturated, or heteroaryl ring having, in addition to the nitrogen, 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; an 8-10 membered bicyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 7-12 membered saturated or partially unsaturated bicyclic heterocyclic ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; m is 0, 1, 2, 3, or 4; n is 0, 1, 2, 3, 4, or 5; p is 0, 1, 2, 3, 4, or 5; and q is 0, 1, 2, 3, 4, or 5.

[0353] Embodiment 2. The compound of embodiment 1, wherein the compound is a compound of Formula 1-1.

[0354] Embodiment 3. The compound of either of embodiments 1-2 wherein when L is a bond

[0355] Embodiment 4. The compound of either of embodiment 1 or 2, wherein X is O.

[0356] Embodiment 5. The compound of either of embodiment 1 or 2, wherein X is S.

[0357] Embodiment 6. The compound of any one of embodiments 1-5, wherein R1is halogen.

[0358] Embodiment 7. The compound of any one of embodiments 1-5, wherein R1is Ci-6 alkyl.

[0359] Embodiment 8. The compound of any one of embodiments 1-5, wherein R1is methyl.

[0360] Embodiment 9. The compound of any one of embodiments 1-5, wherein R1is Ci-6 haloalkyl.

[0361] Embodiment 10. The compound of any one of embodiments 1-5, wherein R1is -OR, - NR2, -C(O)R, -C(O)OR, -or C(O)NR2.

[0362] Embodiment 11 . The compound of embodiment 10, wherein R1is -OH, -OCH3, -NH2, -N(CH3)2, -C(O)CH3, -C(O)OCH3, -C(O)NH2, -C(O)NHCH3, or -C(O)N(CH3)2.

[0363] Embodiment 12. The compound of any one of embodiments 1-5, wherein m is 0.

[0364] Embodiment 13. The compound of any one of embodiments 1-11, wherein m is 1.

[0365] Embodiment 14. The compound of any one of embodiments 1-11, wherein the compound is represented by the following or a pharmaceutically acceptable salt thereof:

[0366] Embodiment 15. The compound of any one of embodiments 1-11, wherein the compound is represented by the following or a pharmaceutically acceptable salt thereof:

[0367] Embodiment 16. The compound of embodiment 1, wherein the compound is represented by either of the following or a pharmaceutically acceptable salt thereof:I-f-1 I-g-1.

[0368] Embodiment 17. The compound of embodiment 1, wherein the compound is represented by one of the following or a pharmaceutically acceptable salt thereof:

[0369] Embodiment 18. The compound of any one of embodiments 1-14, wherein n is 0.

[0370] Embodiment 19. The compound of any one of embodiments 1-14, wherein n is 1.

[0371] Embodiment 20. The compound of any one of embodiments 1-14, wherein n is 2.

[0372] Embodiment 21 . The compound of any one of embodiments 1-14, wherein n is 3.

[0373] Embodiment 22. The compound of any one of embodiments 1-14, wherein n is 4.

[0374] Embodiment 23. The compound of any one of embodiments 1-14, wherein n is 5.

[0375] Embodiment 24. The compound of any one of embodiments 1-2 or 4-23, wherein RBis selected from:

[0376] Embodiment 25. The compound of any one of embodiments 1-20 or 19-24, wherein at least one R3is halogen.

[0377] Embodiment 26. The compound of any one of embodiments 1-20 or 19-24, wherein at least one R3is bromo.

[0378] Embodiment 27. The compound of any one of embodiments 1-20 or 19-24, wherein at least one R3is -CN.

[0379] Embodiment 28. The compound of any one of embodiments 1-27, wherein at least one R2is Ci-6 alkyl.

[0380] Embodiment 29. The compound of any one of embodiments 1-27, wherein at least one R2is a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring.

[0381] Embodiment 30. The compound of embodiment 29, wherein at least one R2is a 3-4 membered saturated monocyclic carbocyclic ring.

[0382] Embodiment 31. The compound of any one of embodiments 1-27, wherein at least one R2is a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur.

[0383] Embodiment 32. The compound of embodiment 31, wherein at least one R2is a 4-5 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1 nitrogen atom.

[0384] Embodiment 33. The compound of any one of embodiments 1-27, wherein at least one R2is L’-R4

[0385] Embodiment 34. The compound of embodiment 33, wherein L1is a C1-2 bivalent saturated straight or branched hydrocarbon chain wherein one methylene unit of the chain is optionally and independently replaced by -C(R)2-, -N(R)-, -O-, -C(O)-, -OC(O)-, -C(O)O-, -S-, - S(O)-, or -S(O)2-.

[0386] Embodiment 35. The compound of embodiment 33, wherein R4is a 3-6 membered saturated or partially unsaturated monocyclic carbocyclic ring.

[0387] Embodiment 36. The compound of embodiment 33, wherein R4is a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur.

[0388] Embodiment 37. The compound of any one of embodiments 1-36, wherein R6represents independently for each occurrence oxo, halogen, -CN, -OR, -OCR3, -SR, -NR2, or -S(O)2R.

[0389] Embodiment 38. The compound of any one of embodiments 1-37, wherein R6represents independently for each occurrence halogen, -CN, -OR, or -S(O)2R.

[0390] Embodiment 39. The compound of any one of embodiments 1-437, wherein R6represents independently for each occurrence fluoro, -CN, or -OH.

[0391] Embodiment 40. The compound of any one of embodiments 1-27, wherein each R2is independently selected from:

[0392] Embodiment 41. The compound embodiment 40, wherein each R2is independently selected fromwherein each of RA, X, R1, and m are as defined above in embodiment 1.

[0394] Embodiment 43. The compound of any one of those depicted in Table 1 herein, or a pharmaceutically acceptable salt thereof.

[0395] Embodiment 44. A pharmaceutical composition comprising a compound of any one of embodiments 1-43 and a pharmaceutically acceptable carrier.

[0396] Embodiment 45. A method of inhibiting the activity of a c-kit kinase in a patient, comprising administering to said patient a compound of any one of embodiments 1-43.

[0397] Embodiment 46. A method of treating a c-kit kinase mediated disease or disorder in a patient, comprising administering to said patient a compound of any one of embodiments 1-43.

[0398] Embodiment 47. The method according to embodiment 46, wherein the c-kit kinase mediated disease or disorder is a mast-cell associated disease, a respiratory disease, an inflammatory disorder, an autoimmune disorder, a metabolic disease, a fibrotic disease, a dermatological disease, an allergic disease, a cardiovascular disease, or a neurological disorder.

[0399] Embodiment 48. The method according to embodiment 46, wherein the c-kit kinase mediated disease or disorder is asthma, allergic rhinitis, pulmonary arterial hypertension (PAH), primary pulmonary hypertension (PPH), pulmonary fibrosis, hepatic fibrosis, cardiac fibrosis, scleroderma, irritable bowel syndrome (IBS), inflammatory bowel disease (IBD), urticaria, dermatosis, atopic dermatitis, allergic contact dermatitis, rheumatoid arthritis, multiple sclerosis, melanoma, a gastrointestinal stromal tumor, a mast cell tumor, mastocytosis, anaphylactic syndrome, food allergy, chronic rhinosinusitis, type I diabetes, type II diabetes, systemic sclerosis, allergic keratoconjunctivitis, vernal keratoconjunctivitis, Crohn’s disease, or systemic and cutaneous lupus erythematosus and dermatomyositis.

[0400] Embodiment 49. The method according to embodiment 46, wherein the c-kit kinase mediated disease or disorder is mast cell gastrointestinal disease, prurigo nodularis, allergic conjunctivitis, eosinophilic esophagitis, mast cell activation syndrome, eosinophilic gastritis and / or eosinophilic duodenitis (EG / EoD), ulcerative colitis, eosinophilic gastritis (EG), or eosinophilic colitis (EC).

[0401] Embodiment 50. The method of embodiment 46, wherein the c-kit kinase mediated disease or disorder is urticaria.

[0402] Embodiment 51. The method of any one of embodiments 46-50, wherein the patient is a human.EXAMPLES

[0403] The invention now being generally described, will be more readily understood by reference to the following examples, which are included merely for purposes of illustration of certain aspects and embodiments of the present invention, and are not intended to limit the invention. Starting materials described herein can be obtained from commercial sources or may be readily prepared from commercially available materials using transformations known to those of skill in the art.

[0404] Abbreviations used in the Examples are described below. Any abbreviations not described are intended to convey their generally accepted meaning.Abbreviations

[0405] Compounds containing one or more stereocenters are a mixture of stereoisomers, unless otherwise stated or described (for example, with use of dashed or wedged bonds denoting stereochemistry). Generally, enhanced stereochemical representation introduces three types of identifiers that can be attached to a stereogenic center. A stereochemical group label is composed from an identifier and a group number. Each stereogenic center marked with wedge bonds belongs to one (and only one) stereochemical group. Grouping allows to specify relative relationships among stereogenic centers.

[0406] ABS denotes a stereogenic center where the absolute configuration is known. As used herein, “or” denotes a stereogenic center where the relative configuration is known, but the absolute configuration is not known. The structure represents one stereoisomer that is either thestructure as drawn (R,S) or the epimer in which the stereogenic centers have the opposite configuration (S,R). One of skill in the art would understand that if a single stereogenic center is present, the designation “or” represents a single isomer for which the absolute configuration is not known. In some such instances, two compounds may be depicted identically with “or” at the single stereogenic center, one of which has a single stereogenic center which is in the R configuration, the other of which is in the S configuration. The designations “and”are used interchangeably and denote a mixture of stereoisomers. It can be a pair of enantiomers or all the diastereomers.

[0407] All starting materials and solvents were obtained either from commercial sources or prepared according to the literature. Unless otherwise stated all reactions were stirred. Organic solutions were routinely dried over anhydrous magnesium sulfate or other drying agent.EXAMPLE 1 - Synthesis of Compounds

[0408] The compounds of Table 1 were synthesized by one of the Schemes below.Synthesis of compound 3:

[0409] To a stirred solution of acid 1 (1.0 eq) in dry DCM (0.1 M) was cooled to 0°C and oxalyl chloride (2 eq) was added drop wise and followed by dry DMF and stirred at RT for 1.5 h and reaction mixture was concentrated under vacuum to obtain crude material. The obtained crude material was added to a stirred solution of aniline 2 (1.1 eq) in pyridine (20 mL) at 0°C. The resulting reaction mixture was stirred at RT for 2 h. Progress of the reaction was monitored by TLC. After completion of the reaction, the reaction mixture was diluted with water (20 mL) and extracted with EtOAc (3 x 20 mL). The organic layer dried over Na2SO4, concentrated to obtain crude material. The obtained crude material was purified by column chromatography(SiOs, hexane: EtOAc, 2:3) to afford intermediate compound 3 in a 43-65% yield as an off-white solid.Synthesis of final compound 4:

[0410] To a stirred solution of compound 3 (1 eq) in toluene (0.1 M mL) was added Lawessons reagent (1.2 eq) at RT, in a microwave compatible vial. The resulting reaction mixture was irradiated in microwave reactor at 150°C for 1 h. Progress of the reaction was monitored by TLC analysis. After completion of the reaction, the reaction mixture was diluted with water (50 mL) and extracted with EtOAc (2 x 50 mL). The organic layer dried over Na2SO4, concentrated to obtain crude material. The obtained crude material was first purified by column chromatography (SiCL, hexane:EtOAc, 2:3) The impure material further re-purified by prep-HPLC purification. Prep fractions were lyophilized to afford the desired thioamide in a 5- 39% yield as off-white solid.2. Synthetic scheme B:Synthesis of intermediate 3:

[0411] To a stirred solution of 3-amino-4-methylbenzonitrile 1 (1 eq), imidazo[l,2- a]pyridine-3 -carboxylic acid 2 (1 .05 eq), DMAP (1 .3 eq) in DMF (0.1 M) was added pyridine (3 eq) into the reaction mixture at RT. After 10 min EDC.HC1 (3 eq) was added (reaction mixture does not turn to a clear solution, looks like thick precipitate). The reaction mixture was heated to60°C for 16 h. Upon heating, it slowly turned to clear brown solution. The reaction was monitored by TLC and LCMS. If SM was still observed an additional equivalent of EDC.HC1 was added to the reaction mixture and allowed to stir for an additional 8 h at 60°C. After completion of the reaction, the reaction mixture was poured drop-wise to ice-cold water (1.5 L) and stirred for 30 min. The resulting solid was fdtered, washed with water (200 mb) and hexane (500 mL) and dried under reduced pressure to afford intermediate 3 as off-white solid in a greater than 90% yield.Synthesis of intermediate 4:

[0412] To a stirred solution of compound 3 (1 eq) in toluene (0.1 M) was added Lawessons reagent (1.2 eq) at RT, in a microwave compatible vial. The resulting reaction mixture was irradiated in microwave reactor at 150°C for 1 h. Progress of the reaction was monitored by TLC analysis. After completion of the reaction, the reaction mixture was diluted with water (50 mL) and extracted with EtOAc (2 x 50 mL). The organic layer dried over Na2SC>4, concentrated to obtain crude material. The obtained crude material was first purified by column chromatography (SiC>2, hexane:EtOAc, 2:3) The impure material further re-purified by prep-HPLC Purification. Prep fractions were lyophilized to afford thioamide 4 in a 5-39% yield as off-white solid.Synthesis of intermediate 5:

[0413] To a stirred solution of intermediate 3 (1 eq) in IPA (0.35 M) was added DIPEA (2 eq) and hydroxylamine hydrochloride (2 eq) sequentially at RT. The reaction mixture was then heated to 60°C for 16 h. Progress of the reaction was monitored by TLC and LCMS. After completion of the reaction, the reaction mixture was cooled to RT. The resulting solid were collected by vacuum filtration, washed with 50% IPA & Water, dried and triturated in EtOAc at 60°C for 4 h. The obtained solid was filtered and dried under vacuum to afford carboxamide 5 in a 30-43% yield as an off-white solid.Synthesis of compound 7:

[0414] To stirred solution of carboxylic acid 6 (1 eq) in NMP (0.03 M) was added 1'- Carbonyldiimidazole (1 eq) at RT and allowed to stirred for 20 min. After 20 min, intermediate 5 (0.5 eq) was added and the reaction mixture was stirred for 30 min at RT. The reaction mixture was subjected to microwave irradiation at 125°C in a microwave reactor for 15-20 min. Progressof the reaction was monitored by TLC and LCMS. The reaction mixture was poured into ice water. The precipitate obtained was filtered and dried under reduced pressure to get crude. The obtained crude material was purified by prep-HPLC Purification. Prep fractions were lyophilized to afford desired final compound 7 in a 20-80% yield.3. Synthetic scheme C:Synthesis of intermediate 2:

[0415] To a solution of Ri-substituted nitrile 1 (1 eq) in EtOH (0.2 M) was added hydroxylamine (4 eq) and stirred at 60°C for 3 h. The reaction mixture was concentrated in vacuo to give carboxamidine 2 (18.0% yield) as crude yellow oil. The crude was carried forward without purification.Synthesis of common intermediate 4:

[0416] To a solution of benzoic acid 3 (1 eq) in NMP (0.03 M) was added CDI (1.2 eq) and stirred at 25°C for 0.5 h. Carboxamidine 2 (1 eq) was added and stirred at 25°C for an additional 0.5 h. The reaction mixture was subjected to microwave irradiation at 125°C for 15-20 min.Progress of the reaction was monitored by TLC and LCMS. The reaction mixture was poured into ice water. The precipitate obtained was filtered and dried under reduced pressure to obtain crude solid. The reaction mixture was diluted with water (10 ml), extracted with EtOAc (10 ml x3). The combined organic layers were washed with brine (10 ml x 2), dried over Na2SO4, filtered and concentrated in vacuo to give a residue. The residue was purified by column chromatography (PE:EtOAc, 3 : 1) to give aniline 4 in a 40-95% yield as yellow solid.Synthesis of compound 6:

[0417] To a stirred solution of aniline 4 (1 eq), carboxylic acid 2 (1.05 eq), DMAP (1.3 eq) in DMF (0.1 M) was added pyridine (3 eq) into the reaction mixture at RT. After 10 min EDC.HC1 (3 eq) was added. The reaction mixture was heated to 60°C for 16 h. Upon heating, it slowly turned to clear brown solution. The reaction was monitored by TLC and LCMS. If SM was still observed an additional equivalent of EDC.HC1 was added to the reaction mixture and allowed to stir for an additional 8 h at 60°C. After completion of the reaction, the reaction mixture was poured drop-wise to ice-cold water (1.5 L) and stirred for 30 min. The resulting solid was filtered, washed with water (200 mL) and hexane (500 mL) and dried under reduced pressure to afford intermediate as off-white solid in a greater than 35-60% yield.4. Synthetic scheme D:

[0418] To a stirred solution 3 -bromo- 1 -methyl- IH-pyrazole 2 or related aryl bromide (1 eq) in 1,4 dioxane:water (4: 1; 8.0 mL) were added K2CO3 (2 eq) (3-amino-4-methylphenyl) boronic acid 1 (1 eq) and degassed with argon for 10 min then Pd(dppf)Ch (0.1 eq) was added and reaction mixture was stirred at 90°C for 16 h. Progress of the reaction was monitored by TLC. After completion of the reaction, reaction mixture was quenched with ice-water and extracted with EtOAc. Organic layer was separated and washed with brine (10 mL), filtered, dried over Na2SO4 and concentrated under reduced pressure to afford 2-methyl-5-(l-methyl-lH-pyrazol-3- yl)aniline 3 in a 25-60% yield as brown solid.Synthesis of final compound 5.

[0419] To a stirred solution of carboxylic acid, 4 (1 eq) in DMF (5 mL) was added DIPEA (2 eq) at 0°C followed by HATU (2 eq) at same temperature and stirred for 10 min. Then added aniline 3 (1.1 eq) to the reaction mixture and left to stir at ambient temperature for 16 h. Progress of the reaction was monitored by TLC. After completion of the reaction, the reaction mixture was quenched with ice-water and a solid was precipitated. The solid was filtered and washed with water and dried under vacuum to get crude. The crude was purified by prep-HPLC purification. Prep fractions were lyophilized to afford the desired final compound in a 25-60% yield as off-white solid.5. Synthetic scheme E:Synthesis of final compound 3.

[0420] In a microwave vial was added intermediate 1 (1 eq), 4-methyl-lH-pyrazole 2 or related heterocycle (5 eq), CS2CO3 (2 eq) and Cui (0.01 eq) in NMP (5 mL) at RT and reaction mixture was stirred at 180°C for 2 h in microwave reactor. Progress of the reaction was monitored by TLC. After completion of the reaction, the reaction mixture diluted with EtOAc and extracted with water, organic layer dried over Na?SO4 and concentrated under vacuum to get crude. The obtained crude material was purified by column chromatography (DCM:MeOH, 99: 1) to afford final compound 3 in a 30-70% yield as off-white solid.6. General synthetic scheme F:Synthesis of intermediate 3.

[0421] To a stirred solution of 2-methyl-5-nitroaniline 2 (1 eq) and carboxylic acid 1 (1.0 eq) in DMF (10 mL) was added pyridine (2.5 eq) dropwise, followed by DMAP (1.1 eq) and stirred for 10 min. Then EDC1 (2 eq) was added to the reaction mixture and gradually warmed at 70°C for 16 h. Progress of the reaction was monitored by TLC. After completion of the reaction, the reaction mixture was poured into ice-water and the solid precipitated out. Precipitated solid was filtered through Buchner funnel, dried under reduced pressure to afford carboxamide 3 in a 30- 55% yield as an off-brown solid.Synthesis of intermediate 4.

[0422] To a stirred solution of intermediate 3 (1 eq) in EtOH:water (2:1, 0.2 M), was added Fe (5 eq), NH4CI (5 eq) slowly added at RT solution was stirred for 2 h at 100°C stirring.Progress of the reaction was monitored by TLC analysis. After completion of the reaction, the reaction mixture diluted with DCM extracted with saturated NaHCO?, organic layer dried over Na2SO4 and concentrated under vacuum to get crude. The obtained crude material was purified by purified by column chromatography (DCM:MeOH, 85: 15) to afford intermediate aniline 4 in a 60-90% yield as off-white solid.Synthesis of final compounds 6.To a stirred solution of carboxamide 4 (1 eq), cyclobutanamine or desired amine (2 eq) in THF (5 mL) was added TEA (4 eq), and Triphosgene (1 eq) at 0°C, catalytic DMF sequentially added and reaction mixture was stirred for 2 days. Progress of the reaction was monitored by TLC. After completion of the reaction, the reaction mixture diluted with DCM extracted with saturated NaHCOs, organic layer dried over Na2SC>4 and concentrated under vacuum to get crude. The crude was purified by prep-HPLC purification. Prep fractions were lyophilized under lyopholizer to afford the final urea as off-white solid in a 45-60% yield.7. General synthetic scheme G:Synthesis of final compound 3.

[0423] To a stirred solution of acid 1 (1.0 eq) in dry DCM (0.1 M) was cooled to 0°C and oxalyl chloride (2 eq) was added drop wise and followed by dry DMF and stirred at RT for 1.5 h and reaction mixture was concentrated under vacuum to obtain crude material. The obtained crude material was added to a stirred solution of aniline 2 (1.1 eq) in pyridine (20 mL) at 0°C. The resulting reaction mixture was stirred at RT for 2 h. Progress of the reaction was monitored by TLC. After completion of the reaction, the reaction mixture was diluted with water (20 mL) and extracted with EtOAc (3 x 20 mL). The organic layer dried over Na2SC>4, concentrated to obtain crude material. The obtained crude material was purified by column chromatography (SiCL, hexane: EtOAc, 2:3) to afford intermediate compound 3 in a 60-68% yield as an off-white solid.EXAMPLE 2 - Preparation of N-(2-chloro-5-(3-((lR,2S)-2-fluorocyclopropyl)-l,2,4- oxadiazol-5-yl)phenyl)-7-((2-hydroxy-2-methylpropoxy)methyl)imidazo[l,2-a]pyridine-3- carboxamide (11-71)

[0424] To a stirred solution of ethyl 7-[(2-hydroxy-2-methyl-propoxy)methyl]imidazo[l,2- a]pyridine-3 -carboxylate (346 mg, 1.0 eq) and 2-chloro-5-[3-[(lR,2S)-2-fluorocyclopropyl]-l,2,4-oxadiazol-5-yl]aniline (300 mg, 1 .0 eq) in toluene (5 mL) was added trimethylaluminium in toluene (2 M, 2.5 eq) at 0°C. The reaction mixture was warmed to 80 °C. After 12 h, the reaction mixture was quenched with saturated aqueous NH4CI (5 mL), extracted with di chloromethane (200 mL), and fdtered. The fdtrate was washed with brine (100 mL x 3), then the organic phase was dried over ISfeSCL, filtered and concentrated in vacuo. The residue was purified by prep-HPLC (column: Phenom enex Luna Cl 8 150*25mm* lOum; mobile phase: [water(formic acid)-acetonitrile]; gradients 5%-65% B over 10 min) to give N-[2-chloro-5-[3- [(lR,2S)-2-fluorocyclopropyl]-l,2,4-oxadiazol-5-yl]phenyl]-7-[(2-hydroxy-2-methyl- propoxy)methyl]imidazo[l,2-a]pyridine-3-carboxamide (11-71, 325 mg, 98.9% purity) as a white solid. ' H NMR (400 MHz, DMSO4) 8 10.25 (s, 1H), 9.39 (d, J= 7.2 Hz, 1H), 8.61 (s, 1H), 8.36 (d, J= 2.0 Hz, 1H), 7.95 (dd, J = 2.0, 8.4 Hz, 1H), 7.84 (d, J = 8.4 Hz, 1H), 7.74 (s, 1H), 7.15 (dd, J = 1.6, 7.2 Hz, 1H), 5.28 - 4.98 (m, 1H), 4.66 (s, 2H), 4.45 (s, 1H), 3.28 (s, 2H), 2.80 (m, 1H), 1.79 (m, 1H), 1.45 - 1.35 (m, 1H), 1.14 (s, 6H); MS (ESI): m / z for C25H25N5O6CIF [M+H]1500.2.EXAMPLE 3 - Preparation of N-(2-chloro-5-(3-((lR,2S)-2-fluorocyclopropyI)-l,2,4- oxadiazol-5-yl)phenyl)-7-((2-hydroxyethoxy)methyl)imidazo[l,2-a]pyridine-3-carboxamide (11-72)

[0425] Step 1: To a stirred solution of (1R,2S)-2-fluorocyclopropanecarboxamide (5 g, 1.0 eq) in dichloromethane (80 mL) was added methoxycarbonyl-(triethylammonio)sulfonyl-azanide (13.87 g, 1.2 eq), at 25°C. After 16 hours, the reaction mixture was concentrated in vacuum, diluted with ethyl acetate (100 mL), washed with brine (50 mL x 2), dried over Na2SO4, filtered, and concentrated in vacuo below 30 °C to give (1R,2S)-2-fluorocyclopropanecarbonitrile (3.5 g, crude) as brown oil.1H NMR (400 MHz, DMSO-d6) δ 5.42 - 5.16 (m, 1H), 2.41 (m, 1H), 1.72 - 1.58 (m, 1H), 1.50 - 1.37 (m, 1H).

[0426] Step 2: To a stirred solution of (1R,2S)-2-fluorocyclopropanecarbonitrile (3.5 g, 1.0 eq) in ethanol (30 mL) was added hydroxylamine (10.87 g, 50% purity, 4.0 eq), and the reaction mixture warmed to 80°C. After 3 hours, the reaction mixture was concentrated in vacuum below 35°C to give a residue. The residue was further lyophilized to give (1R,2S)-2-fluoro-N'-hydroxy- cyclopropanecarboxamidine (3 g, crude) as a yellow oil.1H NMR (400 MHz, DMSO-d6) δ 9.16 - 8.94 (m, 1H), 5.74 (s, 2H), 4.88 - 4.63 (m, 1H), 1.87 (m, 1H), 1.32 - 1.13 (m, 1H), 1.12 - 0.97 (m, 1H).

[0427] Step 3: To a solution of 3-amino-4-chloro-benzoic acid (4.07 g, 1.0 eq) in NMP (50 mL) was added CDI (4.61 g, 1.2 eq), the mixture was stirred at 25°C for 0.5 hours, then (1R,2S)- 2-fluoro-N'-hydroxy-cyclopropanecarboxamidine (2.8 g, 1.0 eq) was added, the reaction mixture was heated to 120°C. After 3 h, the reaction mixture was cooled, diluted with ethyl acetate (300 mL), washed with brine (100 mL x 4), and the organic layer dried (Na2SO4), filtered andconcentrated in vacuo. The residue was purified by column chromatography (silica gel, petroleum ether:ethyl acetate = 20:1 to 3:1) to give 2-chloro-5-[3-[(1R,2S)-2-fluorocyclopropyl]- 1,2,4-oxadiazol-5-yl]aniline (3 g, 97% purity) as a yellow solid.1H NMR (400 MHz, DMSO-d6) δ 7.50 (d, J = 2.0 Hz, 1H), 7.41 (d, J = 8.4 Hz, 1H), 7.18 (dd, J = 2.0, 8.4 Hz, 1H), 5.82 (s, 2H), 5.20 - 4.98 (m, 1H), 2.74 (m, 1H), 1.85 - 1.69 (m, 1H), 1.42 - 1.29 (m, 1H).

[0428] Step 4: To a stirred solution of 2-chloro-5-[3-[(1R,2S)-2-fluorocyclopropyl]-1,2,4- oxadiazol-5-yl]aniline (500 mg, 1.0 eq) and ethyl 7-(2-tetrahydropyran-2- yloxyethoxymethyl)imidazo[1,2-a]pyridine-3-carboxylate (686 mg, 1.0 eq) in toluene (10 mL) was added trimethylaluminium in toluene (2 M, 2.5 eq) at 0°C, then the reaction mixture was warmed at 80°C for 12 hours under N2. The reaction mixture was cooled, quenched with saturated aqueous ammonium chloride (5 mL), extracted with dichloromethane (200 mL), and the organic phase filtered. The filtrate was washed with brine (100 mL x 3), then the organic layer was dried (Na2SO4), filtered and concentrated in vacuum to give N-[2-chloro-5-[3- [(1R,2S)-2-fluorocyclopropyl]-1,2,4-oxadiazol-5-yl]phenyl]-7-(2-tetrahydropyran-2- yloxyethoxymethyl)imidazo[1,2-a]pyridine-3-carboxamide (1 g, 74% purity) as a yellow solid.1H NMR (400 MHz, DMSO-d6) δ 10.24 (s, 1H), 9.39 (d, J = 7.2 Hz, 1H), 8.61 (s, 1H), 8.36 (d, J = 2.0 Hz, 1H), 7.95 (dd, J = 2.0, 8.4 Hz, 1H), 7.83 (d, J = 8.4 Hz, 1H), 7.74 - 7.69 (m, 1H), 7.15 (dd, J = 1.6, 7.2 Hz, 1H), 5.22 - 5.02 (m, 1H), 4.68 - 4.64 (m, 2H), 4.63 - 4.60 (m, 1H), 3.83 - 3.72 (m, 2H), 3.70 - 3.64 (m, 2H), 3.61 - 3.55 (m, 1H), 3.46 - 3.39 (m, 1H), 2.80 (m, 1H), 1.85 - 1.70 (m, 2H), 1.68 - 1.59 (m, 1H), 1.52 - 1.36 (m, 5H); MS (ESI): m / z for C27H27ClFN5O5 [M+H]+ calcd.: 555.2 [M+H]+ found: 556.2.

[0429] Step 5: To a solution of N-[2-chloro-5-[3-[(1R,2S)-2-fluorocyclopropyl]-1,2,4- oxadiazol-5-yl]phenyl]-7-(2-tetrahydropyran-2-yloxyethoxymethyl)imidazo[1,2-a]pyridine-3- carboxamide (900 mg, 1.0 eq) in methanol (10 mL) was added 4-methylbenzenesulfonic acid, pyridine (81 mg, 0.2 eq), and the reaction mixture was stirred at 25°C for 12 h. The reaction mixture was quenched with saturated aqueous ammonium chloride (5 mL), extracted with dichloromethane (200 mL), then the mixture was filtered and the filtrate washed with brine (100 mL x 3). The organic phase was dried (Na2SO4) filtered and concentrated in vacuum. The residue was purified by prep-HPLC (column: Waters Xbridge 150*25mm* 5um;mobile phase: [water (ammonia hydroxide v / v)-acetonitrile];gradient:30%-60% B over min) to give N-[2- chloro-5-[3-[(1R,2S)-2-fluorocyclopropyl]-1,2,4-oxadiazol-5-yl]phenyl]-7-(2-hydroxyethoxymethyl)imidazo[1,2-a]pyridine-3-carboxamide (II-72, 465.84 mg, 96.8% purity) as a white solid.1H NMR (400 MHz, DMSO-d6) δ 10.26 (s, 1H), 9.39 (d, J = 7.2 Hz, 1H), 8.61 (s, 1H), 8.35 (d, J = 2.0 Hz, 1H), 7.95 (dd, J = 2.0, 8.4 Hz, 1H), 7.84 (d, J = 8.4 Hz, 1H), 7.74 (s,1H), 7.16 (dd, J = 1.6, 7.2 Hz, 1H), 5.24 - 5.03 (m, 1H), 4.74 (t, J = 5.6 Hz, 1H), 4.64 (s, 2H), 3.63 - 3.50 (m, 4H), 2.80 (m, 1H), 1.79 (m, 1H), 1.39 (dd, J = 6.4, 12.4 Hz, 1H); MS (ESI): m / z for C22H19N5O4ClF [M+H]+calcd.: 472.2, [M+H]+found: 472.2. EXAMPLE 4 - N-(5-(3-((1R,2S)-2-fluorocyclopropyl)-1,2,4-oxadiazol-5-yl)-2- methylphenyl)-7-(isopropoxymethyl)imidazo[1,2-a]pyridine-3-carboxamide (II-73), -carboxylate (1.00 g, 4.54 mmol, 1.00 eq) in N,N-dimethylformamide (10 mL) was added sodium hydride (272 mg, 6.81 mmol, 60% purity, 1.50 eq) at 0 °C. The mixture was stirred at 0 °C for 0.5 h, then 2-iodopropane (1.54 g, 9.08 mmol, 907 μL, 2.00 eq) was added. The mixture was stirred at 25 °C for 2 h. The reaction mixture was quenched by addition of water (40 mL) then extracted with ethyl acetate (30 mL x 3). The combined organic layers were washed with brine (30 mL × 3), dried over anhydrous sodium sulfate, filtered, and concentrated in under reduced pressure to give a residue. The residue was purified by column chromatography (silica gel, petroleum ether : ethyl acetate = 5:1 to 3:1) to give ethyl 7-(isopropoxymethyl)imidazo[1,2-a]pyridine-3- carboxylate (70 mg, 0.267 mmol, 6%) as a yellow oil.1H NMR (400 MHz, CDCl3-d) δ 9.23 (d, J = 7.2 Hz, 1H), 8.33 - 8.20 (m, 1H), 8.01 (s, 8H), 7.68 (s, 1H), 7.04 (d, J = 7.2 Hz, 1H), 4.60 (s,2H), 4.50 - 4.33 (m, 2H), 3.80 - 3.64 (m, 1H), 1.42 (t, J = 6.8 Hz, 3H), 1.25 (d, J = 6.0 Hz, 6H); MS (ESI): m / z for C14H18N2O3 [M+H]+calcd: 263.1, [M+H]+found: 263.

[0431] Step 2: To a solution of ethyl 7-(isopropoxymethyl)imidazo[1,2-a]pyridine-3- carboxylate (70.0 mg, 0.267 mmol, 1.00 eq) and 5-[3-[(1R,2S)-2-fluorocyclopropyl]-1,2,4- oxadiazol-5-yl]-2-methyl-aniline (62 mg, 0.267 μmol, 1.00 eq) in toluene (2 mL) was added a 2M solution of trimethylaluminum in toluene (333.58 μL, 2.50 eq) under an N2 atmosphere. The mixture was stirred at 80 °C for 2 h. The reaction mixture was diluted with water (3 mL) and extracted with ethyl acetate (3 mL x 3). The combined organic layers were washed with brine (3 mL x 3), dried over with anhydrous sodium sulfate, filtered and concentrated under reduced pressure to give a residue. The residue was purified by prep-HPLC (column: Phenomenex Luna C18150×25mm×10um; mobile phase:[water(formic acid)-acetonitrile]; gradient:35%-65% B over 10 min) to give N-[5-[3-[(1R,2S)-2-fluorocyclopropyl]-1,2,4-oxadiazol-5-yl]-2-methyl- phenyl]-7-(isopropoxymethyl)imidazo [1,2-a]pyridine-3-carboxamide (II-73, 12 mg, 0.027 mmol, 10%) as a white solid.1H NMR (400 MHz, DMSO-d6) δ 10.03 (s, 1H), 9.38 (d, J = 7.2 Hz, 1H), 8.56 (s, 1H), 8.14 (d, J = 1.6 Hz, 1H), 7.92 - 7.80 (m, 1H), 7.67 (s, 1H), 7.55 (d, J = 8.0 Hz, 1H), 7.17 - 7.06 (m, 1H), 5.25 - 4.99 (m, 1H), 4.59 (s, 2H), 3.75 - 3.64 (m, 1H), 2.86 - 2.71 (m, 1H), 2.39 (s, 3H), 1.84 - 1.69 (m, 1H), 1.44 - 1.32 (m, 1H), 1.18 (d, J = 6.0 Hz, 6H); MS (ESI): m / z for C24H24FN5O3 [M+H]+calcd: 450.2, [M+H]+found: 450.2. EXAMPLE 5 - Preparation of N-(5-{3-[3,3-difluoro-2-hydroxypropyl]-1,2,4-oxadiazol-5- yl}-2-tolyl)-6-methoxy-1,3a-diaza-3-indenecarboxamide (II-74)

[0432] Step 1: To a solution of 3-((tert-butyldiphenylsilyl)oxy)-4,4-difluorobutanoic acid (5 g, 1.0 eq) in DMF (50 mL) was added saturated aqueous ammonium chloride (1.06 g, 1.5 eq), HATU (7.53 g, 1.5 eq), and DIPEA (5.12 g, 3 eq). The mixture was stirred at 25 °C for 6 hours. The reaction mixture was diluted with water (100 mL) and extracted with ethyl acetate (100 mL x 3). The combined organic layers were washed with brine (50 mL x 4), dried over Na2SO4, filtered and concentrated in vacuum to give a residue. The residue was purified by silica gel chromatography (petroleum ether : ethyl acetate=1:1) to give 3-((tert-butyldiphenylsilyl)oxy)- 4,4-difluorobutanamide (2.4 g) as a white solid. MS (ESI): m / z for C20H25F2NO2Si [M+Na]+calcd.: 400.1 [M+Na]+found: 400.1.

[0433] Step 2: To a solution of 3-((tert-butyldiphenylsilyl)oxy)-4,4-difluorobutanamide (2.40 g, 1.0 eq) in dichloromethane (25 mL) was added Burgess reagent (1.82 g, 1.2 eq). The mixture was stirred at 25 °C for 12 hours. The reaction mixture was diluted with water (50 mL) and extracted with ethyl acetate (80 mL x 2). The combined organic layers were washed with brine (30 mL × 2), dried over Na2SO4, filtered and concentrated in vacuum to give 3-((tert- butyldiphenylsilyl)oxy)-4,4-difluorobutanenitrile (2.3 g, crude) as a colorless oil.1H NMR (400 MHz, DMSO-d6) δ = 7.68 - 7.58 (m, 4H), 7.55 - 7.42 (m, 6H), 6.15-5.80 (m, 1H), 4.17 - 3.96 (m, 1H), 2.87 - 2.71 (m, 2H), 1.04 (s, 9H).

[0434] Step 3: To a solution of 3-((tert-butyldiphenylsilyl)oxy)-4,4-difluorobutanenitrile (2.3 g, 1.0 eq) in ethanol (30 mL) was added hydroxylamine (845 mg, 50% purity, 2.0 eq).The mixture was stirred at 70 °C for 3 hours. The reaction mixture was concentrated under reduced pressure to give (Z)-3-((tert-butyldiphenylsilyl)oxy)-4,4-difluoro-N'-hydroxybutanimidamide (2.3 g, crude) as a colorless oil.1H NMR (400 MHz, DMSO-d6) δ = 8.96 (s, 1H), 7.67-7.59 (m, 4H), 7.51 - 7.36 (m, 6H), 6.04 - 5.63 (m, 1H), 5.39 (s, 2H), 4.30-4.14 (m, 1H), 2.40 - 2.22 (m, 2H), 0.99 (s, 8H).

[0435] Step 4: To a solution of 3-amino-4-methylbenzoic acid (0.85 g, 1.0 eq) in NMP (8 mL) was added di(imidazol-1-yl)methanone (1.00 g, 1.1 eq). The mixture was stirred at 25 °C for 0.5 hour. Then (Z)-3-((tert-butyldiphenylsilyl)oxy)-4,4-difluoro-N'-hydroxybutanimidamide (1.8 g, 1.0 eq) was added. The mixture was stirred at 120 °C for 1 hour. The reaction mixture was diluted with water (50 mL) and extracted with ethyl acetate (100 mL × 3). The combined organic layers were washed with brine (100 mL × 5), dried over Na2SO4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by column chromatography (silica gel, petroleum ether / ethyl acetate=5 / 1 to 1 / 1) to give 5-(3-(2-((tert- butyldiphenylsilyl)oxy)-3,3-difluoropropyl)-1,2,4-oxadiazol-5-yl)-2-methylaniline (2 g) as a yellow solid.1H NMR (400 MHz, methanol-d4) δ = 7.69 - 7.64 (m, 2H), 7.47 - 7.42 (m, 3H), 7.42 - 7.37 (m, 2H), 7.33 (d, J = 1.6 Hz, 1H), 7.30 (d, J = 7.2 Hz, 1H), 7.27 - 7.21 (m, 3H), 7.19 - 7.14 (m, 1H), 6.00 - 5.65 (m, 1H), 4.44 - 4.29 (m, 1H), 3.15 - 3.05 (m, 1H), 2.99 - 2.91 (m, 1H), 2.24 (s, 3H), 0.93 (s, 9H).

[0436] Step 5: To a solution of 7-methoxyimidazo[1,2-a]pyridine-3-carboxylic acid (100 mg, 1.0 eq) in pyridine (2 mL) was added EDCI (160 mg, 1.6 eq), then reaction mixture was stirred at 25 °C for 0.5 hours. Then 5-(3-(2-((tert-butyldiphenylsilyl)oxy)-3,3-difluoropropyl)-1,2,4- oxadiazol-5-yl)-2-methylaniline (291 mg, 1.1 eq) was added and the reaction mixture was stirred at 60 °C for 2 hours. The reaction mixture was diluted with water (20 mL) and extracted with ethyl acetate (40 mL × 2). The combined organic layers were washed with brine (20 mL × 2), dried over Na2SO4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by column chromatography (silica gel, petroleum ether / ethyl acetate=5 / 1 to 0 / 1) to give N-(5-(3-(2-((tert-butyldimethylsilyl)oxy)-3,3-difluoropropyl)-1,2,4-oxadiazol-5-yl)- 2-methylphenyl)-7-methoxyimidazo[1,2-a]pyridine-3-carboxamide (90 mg) as a white solid. MS (ESI): m / z for C37H37F2N5O4Si [M+H]+ calcd.: 682.2 [M+H]+ found: 682.2.

[0437] Step 6: To a solution of N-(5-(3-(2-((tert-butyldimethylsilyl)oxy)-3,3-difluoropropyl)- 1,2,4-oxadiazol-5-yl)-2-methylphenyl)-7-methoxyimidazo[1,2-a]pyridine-3-carboxamide (85 mg, 1.0 eq) in THF (2 mL) was added TBAF (1 M, 1.1 eq). The mixture was stirred at 25 °C for 1 hour. The reaction mixture was diluted with water (30 mL) and extracted with ethyl acetate (50 mL × 2). The combined organic layers were washed with brine (15 mL × 2), dried over Na2SO4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by column chromatography (silica gel, petroleum ether / ethyl acetate=5 / 1 to 0 / 1) to give N-(5-(3-(3,3-difluoro-2-hydroxypropyl)-1,2,4-oxadiazol-5-yl)-2-methylphenyl)-7-methoxyimidazo[1,2- a]pyridine-3-carboxamide (II-74, 38 mg) as a white solid.1H NMR (400 MHz, methanol-d4) δ = 9.32 (d, J = 7.6 Hz, 1H), 8.35 (s, 1H), 8.22 (d, J = 1.6 Hz, 1H), 7.96 (dd, J = 1.6, 8.0 Hz, 1H), 7.53 (d, J = 8.0 Hz, 1H), 7.05 (d, J = 2.4 Hz, 1H), 6.85 (dd, J = 2.4, 7.6 Hz, 1H), 6.07-5.71 (m, 1H), 4.36 - 4.20 (m, 1H), 3.95 (s, 3H), 3.12 - 2.96 (m, 2H), 2.44 (s, 3H); MS (ESI): m / z for C21H19F2N5O4 [M+H]+ calcd.: 444.2 [M+H]+ found: 444.2. EXAMPLE 6 - Preparation of N-[2-methyl-5-(1,2,4-oxadiazol-5-yl)phenyl]imidazo[1,2- a]pyridine-3-carboxamide (II-75), e (20 mL) was added (COCl)2(2.80 g, 1.93 mL, 2.0 eq) and DMF (81 mg, 84.95 μL, 0.1 eq), and the reaction mixture was stirred at 25°C for 1 hour. The reaction mixture was concentrated to give 4-methyl-3-nitro-benzoyl chloride (2.2 g, crude) in dichloromethane (20 mL) as a yellow liquid. MS (ESI): m / z for C8H6O3ClN [methyl ester+H]+calcd.: 196.1 [methyl ester+H]+found: 196.1

[0439] Step 2: To a solution of NH3•water (9.1 g, 10 mL, 28% purity, 6.6 eq) was added the mixture of 4-methyl-3-nitro-benzoyl chloride (2.2 g, 1.0 eq) in dichloromethane (20 mL) and the reaction mixture was stirred at 25°C for 1 hour. The reaction mixture was filtered and the filtercake was washed with water (100 mL), and dried under vacuum to give 4-methyl-3- nitrobenzamide (1.9 g, crude) as a white solid.1H NMR (400 MHz, DMSO-d6) δ 8.45 (d, J = 2.0 Hz, 1H), 8.22 (s, 1H), 8.10 (dd, J = 2.0, 8.0 Hz, 1H), 7.66 - 7.57 (m, 2H), 2.56 (s, 3H).

[0440] Step 3: A mixture of 4-methyl-3-nitrobenzamide (0.7 g, 1.0 eq) in DMF-DMA (1:1, 10 mL) was stirred at 110 °C for 1 hour. The reaction mixture was concentrated in vacuum. The residue was purified by column chromatography (silica gel, petroleum ether / ethyl acetate=1 / 1) to give N-(dimethylaminomethylene)-4-methyl-3-nitro-benzamide (910 mg, 99.56%) as red solid.1H NMR (400 MHz, CDCl3-d) δ 8.86 (d, J = 1.2 Hz, 1H), 8.67 (s, 1H), 8.36 (dd, J = 1.6, 8.0 Hz, 1H), 7.39 (d, J = 8.0 Hz, 1H), 3.24 (d, J = 9.2 Hz, 6H), 2.65 (s, 3H).

[0441] Step 4: To a solution of hydroxylamine hydrochloride (222 mg, 1.5 eq) and NaOH (5 M, 2.50 mL, 5.88 eq) in dioxane (20 mL) and acetic acid (25 mL) was added N- (dimethylaminomethylene)-4-methyl-3-nitro-benzamide (500 mg, 1.0 eq), and the reaction mixture was stirred at 25°C for 0.5 hour. The mixture was warmed at 80 °C for 2 hours, then the reaction mixture was diluted with water (100 mL), extracted with ethyl acetate (100 mL x 2), the organic layer was washed with saturated aqueous sodium bicarbonate (70 mL x 3) and brine (100 mL x 1), dried over Na2SO4, filtered, and concentrated in vacuum. The residue was purified by column chromatography (silica gel, petroleum ether:ethyl acetate=1:0 to 3:1) to give 5-(4- methyl-3-nitro-phenyl)-1,2,4-oxadiazole (300 mg, 69 %) as a yellow solid.1H NMR (400 MHz, CDCl3-d) δ 8.76 (d, J = 1.6 Hz, 1H), 8.54 (s, 1H), 8.27 (dd, J = 2.0, 8.0 Hz, 1H), 7.57 (d, J = 8.0 Hz, 1H), 2.72 (s, 3H).

[0442] Step 5: To a solution of 5-(4-methyl-3-nitro-phenyl)-1,2,4-oxadiazole (100 mg, 1.0 eq) and 4-(4-pyridyl)pyridine (2.00 mg, 0.03 eq) in DMF (2 mL) was added hypoboric acid (131 mg, 3.0 eq), and the reaction mixture was stirred at 25°C for 1 hour. The reaction mixture was diluted with ethyl acetate (50 mL), washed with water (30 mL x 3), the organic layer was dried over Na2SO4, filtered and concentrated in vacuum to give 2-methyl-5-(1,2,4-oxadiazol-5-yl)aniline (85 mg, quantitative yield) as a yellow solid.1H NMR (400 MHz, DMSO-d6) δ 8.99 (s, 1H), 7.37 (d, J = 1.6 Hz, 1H), 7.24 - 7.11 (m, 2H), 2.13 (s, 3H).

[0443] Step 6: To a solution of imidazo[1,2-a]pyridine-3-carboxylic acid (79 mg, 1.0 eq) in pyridine (2 mL) was added EDCI (149 mg, 1.6 eq), the mixture was stirred at 25 °C for 0.5 hour, then 2-methyl-5-(1,2,4-oxadiazol-5-yl)aniline (85 mg, 1.0 eq) was added, and the reaction mixture stirred at 60°C for 2 hours. The reaction mixture was diluted with water (30 mL),extracted with ethyl acetate (50 mL), the organic layer was washed with brine (20 mL x 3), dried over Na2SO4, filtered, and concentrated in vacuum. The residue was purified by prep-HPLC (column: Phenomenex luna C18150*25mm* 10um; mobile phase: [water(formic acid)- acetonitrile];gradient:12%-42% B over 10 min) to give N-[2-methyl-5-(1,2,4-oxadiazol-5- yl)phenyl]imidazo[1,2-a]pyridine-3-carboxamide (II-75, 52 mg, 30 %) as a white solid.1H NMR (400 MHz, DMSO-d6) δ 10.07 (s, 1H), 9.46 (d, J = 7.2 Hz, 1H), 9.11 (s, 1H), 8.60 (s, 1H), 8.22 (d, J = 1.6 Hz, 1H), 7.94 (dd, J = 2.0, 8.0 Hz, 1H), 7.79 (d, J = 9.2 Hz, 1H), 7.62 - 7.47 (m, 2H), 7.18 (m, 1H), 2.40 (s, 3H); MS (ESI): m / z for C18H15N5O4 [M+H]+calcd.:320.1, [M+H]+ found: 320.1. EXAMPLE 7 - Preparation of 7-methyl-N-(2-methyl-5-(1H-1,2,4-triazol-3- yl)phenyl)imidazo[1,2-a]pyridine-3-carboxamide (II-76)

[0444] Step 1: To a solution of 3-(4-methyl-3-nitrophenyl)-1H-1,2,4-triazole (340 mg, 1.0 eq) in DMF (6 mL) was added 4-(4-pyridyl)pyridine (3 mg) slowly. To the mixture was added hypoboric acid (448 mg, 3.0 eq) slowly. The mixture was stirred at 25°C for 0.5 hour. The mixture was diluted with water (10 mL) and extracted with ethyl acetate (20 mL x 3). The combined organic layers were washed with brine (20 mL x 3), dried over Na2SO4, filtered and concentrated under reduced pressure to give 2-methyl-5-(1H-1,2,4-triazol-3-yl)aniline (300 mg, crude) as a yellow solid.1H NMR (400 MHz, DMSO-d6) δ = 14.41 - 13.67 (m, 1H), 7.30 (s, 1H), 7.12 (s, 1H), 7.01 (s, 1H), 5.16 - 4.85 (m, 2H), 2.09 (s, 3H); MS (ESI): m / z for : C9H10N4 [M+H]+ calcd.: 175.09 [M+H]+ found:175.3.

[0445] Step 2: To a solution of 7-methylimidazo[1,2-a]pyridine-3-carboxylic acid (100 mg, 1.0 eq) and 2-methyl-5-(1H-1,2,4-triazol-3-yl)aniline (110 mg, 1.0 eq) in pyridine (2 mL) was added EDCI (130 mg, 1.2 eq). The mixture was stirred at 60°C for 1 hour. The mixture was diluted with water (20 mL) and extracted with ethyl acetate (20 mL x 3). The combined organiclayers were washed with brine (20 mL), dried over Na2SO4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by prep-HPLC (column: C18 150×30mm; mobile phase: [water(formic acid)-acetonitrile]; gradient:10%-40% B over 7 min) to give 7-methyl-N-(2-methyl-5-(1H-1,2,4-triazol-3-yl)phenyl)imidazo[1,2-a]pyridine-3- carboxamide (II-76, 25.44 mg, 12%) as a white solid.1H NMR (400 MHz, DMSO-d6) δ = 14.00 (s, 1H), 9.95 (s, 1H), 9.34 (d, J = 7.2 Hz, 1H), 8.52 (s, 1H), 8.05 (s, 1H), 7.90 - 7.81 (m, 1H), 7.57 (d, J = 0.8 Hz, 1H), 7.41 ( d, J = 8.0 Hz, 1H), 7.03 (d, J = 7.2 Hz, 1H), 2.43 (s, 3H), 2.32 (s, 3H); MS (ESI): m / z for : C18H16N6O [M+H]+ calcd.: 333.14 [M+H]+ found:333.1. EXAMPLE 8 - Preparation of 6-(difluoromethyl)-N-(2-methyl-5-(3-methyl-1,2,4-oxadiazol- 5-yl)phenyl)pyrazolo[1,5-a]pyridine-3-carboxamide (II-77), mg, 1.0 eq) in DMSO (5 mL) was added Pd(OAc)2(33 mg, 0.2 eq) and DPPP (31 mg, 0.1 eq), Et3SiH (173 mg, 2.0 eq), and triethylamine (226 mg, 3.0 eq). The mixture was stirred at 80 °C for 12 hours under CO at 45 psi. The reaction mixture was diluted with water (50 mL) and extracted with ethyl acetate (50 mL x 3). The combined organic layers were washed with brine (20 mL x 5), dried over Na2SO4, filtered, and concentrated under reduced pressure to give a residue. The residue was purified by column chromatography (silica gel, petroleum ether / ethyl acetate=10:1 to 1:1) to give ethyl 6-formylpyrazolo[1,5-a]pyridine-3-carboxylate (50 mg) as a white solid.1H NMR (400 MHz, methanol-d4) δ = 9.99 (d, J = 0.8 Hz, 1H), 9.37 - 9.32 (m, 1H), 8.71 - 8.69 (m, 1H), 8.68-8.64 (m, 1H), 8.55 (s, 1H), 8.38 (s, 1H), 8.23 - 8.18 (m, 1H), 8.13 (s,1H), 8.11 (dd, J = 0.8, 9.2 Hz, 1H), 7.91 (dd, J = 1.2, 9.2 Hz, 1H), 7.63 (dd, J = 1.2, 9.2 Hz, 1H), 7.57 - 7.52 (m, 1H), 7.14 - 7.07 (m, 1H), 4.48 - 4.30 (m, 2H), 1.47 - 1.36 (m, 3H).

[0447] Step 2: To a solution of ethyl 6-formylpyrazolo[1,5-a]pyridine-3-carboxylate (50 mg, 1.0 eq) in dichloromethane (1 mL) was added DAST (37 mg, 1.0 eq) at 0 °C. The mixture was stirred at 25 °C for 1 hour. The reaction mixture was quenched with water (20 mL) and then extracted with ethyl acetate (40 mL x 2). The combined organic layers were washed with brine (20 mL x 2), dried over Na2SO4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by prep-TLC (silica gel, petroleum ether:ethyl acetate= 3:1) to give ethyl 6-(difluoromethyl)pyrazolo[1,5-a]pyridine-3-carboxylate (30 mg) as a white solid.1H NMR (400 MHz, methanol-d4) δ = 8.95 (s, 1H), 8.47 (s, 1H), 8.25 (d, J = 9.2 Hz, 1H), 7.68 (dd, J = 1.2, 9.2 Hz, 1H), 7.13 - 6.74 (m, 1H), 4.44 - 4.34 (m, 2H), 1.42 (t, J = 7.2 Hz, 3H).

[0448] Step 3: To a solution of 2-methyl-5-(3-methyl-1,2,4-oxadiazol-5-yl)aniline (26 mg, 1.1 eq) in toluene (1 mL) was added trimethylaluminium in toluene (2 M, 2.5 eq) at 25 °C, then the reaction mixture was stirred at 25 °C for 0.5 hour. Ethyl 6-(difluoromethyl)pyrazolo[1,5- a]pyridine-3-carboxylate (30 mg, 1.0 eq) was added, then the reaction mixture was stirred at 80 °C for 2 hours. The reaction mixture was quenched with saturated aqueous ammonium chloride solution (20 mL) then was extracted with ethyl acetate (20 mL x 3). The combined organic layers were washed with brine (25 mL x 2), dried over Na2SO4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by prep-HPLC (formic acid condition; column: C18150×30mm; mobile phase: [water(formic acid)- acetonitrile]; gradient:42%-72% B over 7 min) to give 6-(difluoromethyl)-N-(2-methyl-5-(3-methyl-1,2,4-oxadiazol-5- yl)phenyl)pyrazolo[1,5-a]pyridine-3-carboxamide (II-77, 11.81 mg) as a white solid.1H NMR (400 MHz, DMSO-d6) δ = 9.87 (s, 1H), 9.22 (s, 1H), 8.89 (s, 1H), 8.36 (d, J = 9.2 Hz, 1H), 8.21 (d, J = 1.6 Hz, 1H), 7.87 (dd, J = 1.6, 8.0 Hz, 1H), 7.69 (d, J = 9.0 Hz, 1H), 7.54 (d, J = 8.0 Hz, 1H), 7.16 (t, J = 55.2 Hz, 1H), 2.42 (s, 3H), 2.40 (s, 3H); MS (ESI): m / z for C19H15F2N5O2 [M+H]+ calcd.: 383.12; [M+H]+ found: 384.3.EXAMPLE 9 - Preparation of N-(5-(3-(3,3-difluoro-2-hydroxypropyl)-1,2,4-oxadiazol-5- yl)-2-methylphenyl)-6-methoxypyrazolo[1,5-a]pyridine-3-carboxamide (II-78)1,2,4-oxadiazol-5-yl)-2-methylaniline (194 mg, 1.05 eq) in toluene (3 mL) was added trimethylaluminium in toluene (2 M, 2.5 eq). The reaction mixture was stirred at 25 °C for 0.5 hours, then ethyl 6-methoxypyrazolo[1,5-a]pyridine-3-carboxylate (80 mg, 1 eq) was added. The reaction mixture was stirred at 80 °C for 12 hours. The reaction mixture was quenched with a saturated aqueous ammonium chloride solution (20 mL) then extracted with ethyl acetate (50 mL x 3). The combined organic layers were washed with brine (25 mL x 2), dried over Na2SO4, filtered, and concentrated under reduced pressure to give a residue. The residue was purified by column chromatography (silica gel, petroleum ether / ethyl acetate=5 / 1 to 0:1) to give N-(5-(3-(2- ((tert-butyldiphenylsilyl)oxy)-3,3-difluoropropyl)-1,2,4-oxadiazol-5-yl)-2-methylphenyl)-6- methoxypyrazolo[1,5-a]pyridine-3-carboxamide (100 mg) as a white solid. MS (ESI): m / z for C37H37F2N5O4Si [M+H]+ calcd.: 604.2 [M+H]+ found: 604.2.

[0450] Step 2: To a solution of N-(5-(3-(2-((tert-butyldiphenylsilyl)oxy)-3,3-difluoropropyl)- 1,2,4-oxadiazol-5-yl)-2-methylphenyl)-6-methoxypyrazolo[1,5-a]pyridine-3-carboxamide (100 mg, 1.0 eq) in THF (2 mL) was added TBAF (1 M, 1.1 eq). The mixture was stirred at 25 °C for 1 hour. The reaction mixture was diluted with water (30 mL) and extracted with ethyl acetate (40 mL x 3). The combined organic layers were washed with brine (20 mL x 3), dried over Na2SO4, filtered, and concentrated under reduced pressure to give a residue. The residue was purified by column chromatography (silica gel, petroleum ether / ethyl acetate=5 / 1 to 0 / 1) to give N-(5-(3- (3,3-difluoro-2-hydroxypropyl)-1,2,4-oxadiazol-5-yl)-2-methylphenyl)-6-methoxypyrazolo[1,5- a]pyridine-3-carboxamide (II-78, 36 mg) as a white solid.1H NMR (400 MHz, methanol-d4) δ = 8.54 (s, 1H), 8.33 (d, J = 2.0 Hz, 1H), 8.21 (d, J = 1.6 Hz, 1H), 8.17 (d, J = 9.6 Hz, 1H), 7.95 (dd, J = 1.6, 8.0 Hz, 1H), 7.53 (d, J = 8.0 Hz, 1H), 7.30 (dd, J = 2.0, 9.8 Hz, 1H), 5.90 (d, J = 3.6Hz, 1H), 4.39 - 4.21 (m, 1H), 3.91 (s, 3H), 3.10 - 2.97 (m, 2H), 2.44 (s, 3H); MS (ESI): m / z for C21H19F2N5O4 [M+H]+ calcd.: 444.3 [M+H]+ found: 444.3. EXAMPLE 10 - Preparation of N-(5-(1-cyclopropyl-1H-1,2,4-triazol-3-yl)-2-methylphenyl)- 7-methylimidazo[1,2-a]pyridine-3-carboxamide (II-79)

[0451] Step 1: To a solution of 4-methyl-3-nitro-benzoic acid (7.4 g, 1.0mL) was added CDI (7.99 g, 1.2 eq) and DMF (35 mg, 0.01 eq). The mixture was stirred at 25 °C for 1 hour to give (1H-imidazol-1-yl)(4-methyl-3-nitrophenyl)methanone (9.45 g, crude) in THF as a clear solution which was used directly in the next step without further work-up.

[0452] Step 2: To a solution of (1H-imidazol-1-yl)(4-methyl-3-nitrophenyl)methanone (9.45 g, 1.0 eq) in THF (100 mL) was added NH3•water (11.24 mL, 28% purity, 2.0 eq). The mixture was stirred at 25°C for 12 hours. The mixture was diluted with NaOH (1N, 100 mL) and extracted with ethyl acetate (100 mL x 3). The combined organic layers were washed with brine (100 mL), dried over Na2SO4, filtered and concentrated under reduced pressure to give 4-methyl- 3-nitrobenzamide (6.4 g, crude) as a white solid.1H NMR (400 MHz, DMSO-d6) δ = 8.45 (d, J = 1.6 Hz, 1H), 8.22 (s, 1H), 8.12 - 8.07 (m, 1H), 7.66 - 7.53 (m, 2H), 2.56 (s, 3H); MS (ESI): m / z for : C8H8N2O3 [M+H]+ calcd.181.05 [M+H]+ found:181.3.

[0453] Step 3: A mixture of 4-methyl-3-nitro-benzamide (3.2 g, 1.0 eq) and DMF-DMA (32 mL, 13.56 eq) was heated to 110°C for 1 hour. The mixture was cooled then concentrated to give a residue. The residue was purified by column chromatography (silica gel, petroleum ether / ethyl acetate=3 / 1) to give N-((dimethylamino)methylene)-4-methyl-3-nitrobenzamide (3.5 g, 80%) as a yellow solid. MS (ESI): m / z for: C11H13N3O3 [M+H]+ calcd.:236.1 [M+H]+ found: 236.0.

[0454] Step 4: To a solution of N-((dimethylamino)methylene)-4-methyl-3-nitrobenzamide (3.0 g, 1.0 eq) in acetic acid (30 mL) was added hydrazine hydrate (977 mg,, 98% purity, 1.5 eq). The mixture was stirred at 95 °C for 2 hours, then cooled to room temperature, and diluted with water (60 mL). The mixture was filtered and the solid precipitate was washed with water (10 mL) then dried under high vacuum to give 3-(4-methyl-3-nitrophenyl)-1H-1,2,4-triazole (2.3 g, crude) as a yellow solid.1H NMR (400 MHz, DMSO-d6) δ = 14.36 (s, 1H), 8.68 - 8.50 (m, 2H), 8.32 - 8.17 (m, 1H), 7.61 (d, J = 8.0 Hz, 1H), 2.56 (s, 3H); MS (ESI): m / z for: C9H8N4O2 [M+H]+ calcd.: 205.06 [M+H]+ found: 205.0.

[0455] Step 5: To a mixture of 3-(4-methyl-3-nitrophenyl)-1H-1,2,4-triazole (500 mg, 1.0 eq) and cyclopropylboronic acid (2.10 g, 10.0 eq) in dichloroethane (10 mL) was added Cu(OAc)2 (667 mg, 1.5 eq), 2-(2- pyridyl)pyridine (573 mg, 1.5 eq) and Na2CO3 (1.3 g, 5.0 eq) under O2 (15 psi). The mixture was stirred at 80 °C for 12 hours under O2, then cooled to room temperature and filtered. The filtrate was concentrated to give a residue. The residue was purified by column chromatography (silica gel, petroleum ether / ethyl acetate=3 / 1) to give 1-cyclopropyl- 3-(4-methyl-3-nitrophenyl)-1H-1,2,4-triazole (500 mg, 76 %) as a yellow solid.1H NMR (400 MHz, CHLOROFORM-d) δ = 8.69 (d, J = 1.6 Hz, 1H), 8.23 - 8.18 (m, 1H), 8.16 (s, 1H), 7.40 (d, J = 8.0 Hz, 1H), 3.72 - 3.63 (m, 1H), 2.63 (s, 3H), 1.28 - 1.21 (m, 2H), 1.20 - 1.11 (m, 2H); MS (ESI): m / z for: C12H12N4O2 [M+H]+ calcd.: 245.10 [M+H]+ found: 245.2.

[0456] Step 6: To a solution of 1-cyclopropyl-3-(4-methyl-3-nitrophenyl)-1H-1,2,4-triazole (200 mg, 1.0 eq) in DMF (6 mL) was added 4-(4-pyridyl)pyridine (1.48 mg, 0.01 eq) slowly. To the mixture was added hypoboric acid (220 mg, 3.0 eq) slowly. The mixture was stirred at 25 °C for 0.5 hours. The mixture was diluted with water (10 mL) then extracted with ethyl acetate (30 mL x 3). The combined organic layers were washed with brine (20 mL x 3), dried over Na2SO4, filtered, and concentrated under reduced pressure to give 5-(1-cyclopropyl-1H-1,2,4-triazol-3- yl)-2-methylaniline (190 mg, crude) as a yellow oil. MS (ESI): m / z for: C12H14N4[M+H]+ calcd.:215.12 [M+H]+ found: 215.3.

[0457] Step 7: To a solution of 7-methylimidazo[1,2-a]pyridine-3-carboxylic acid (100 mg, 1.0 eq) and 5-(1-cyclopropyl-1H-1,2,4-triazol-3-yl)-2-methylaniline (190 mg, 1.0 eq) in pyridine (2 mL) was added EDCI (163 mg, 1.5 eq). The mixture was stirred at 60 °C for 2 hours. The mixture was concentrated to give a residue. The residue was purified by prep-HPLC (column: C18150×30mm; mobile phase: [water(formic acid)-acetonitrile]; gradient:15%- 45% B over 7 min) to give N-(5-(1-cyclopropyl-1H-1,2,4-triazol-3-yl)-2-methylphenyl)-7-methylimidazo[1,2- a]pyridine-3-carboxamide (II-79, 102.8 mg, 42 %) as a white solid.1H NMR (400 MHz, DMSO- d6) δ = 9.90 (s, 1H), 9.33 (d, J = 7.2 Hz, 1H), 8.63 (s, 1H), 8.51 (s, 1H), 8.02 (s, 1H), 7.82 - 7.72(m, 1H), 7.55 (s, 1H), 7.36 (d, J = 8.0 Hz, 1H), 7.04 - 6.98 (m, 1H), 3.87 - 3.78 (m, 1H), 2.42 (s, 3H), 2.31 (s, 3H), 1.19 - 1.10 (m, 2H), 1.10 - 1.04 (m, 2H); MS (ESI): m / z for: C21H20N6O [M+H]+ calcd.: 373.17 [M+H]+ found: 373.2. EXAMPLE 11 - Preparation of N-(5-(1-(2-hydroxypropyl)-1H-1,2,4-triazol-3-yl)-2- methylphenyl)-7-methylimidazo[1,2-a]pyridine-3-carboxamide (II-80)y y , , g, . eq) in DMF (5 mL) was added Cs2CO3 (1.20 g, 1.5 eq) and 2-methyloxirane (569 mg, 4.0 eq). The mixture was stirred at 40 °C for 12 hours. The mixture was diluted with water (10 mL) and extracted with ethyl acetate (30 mL x 3). The combined organic layers were washed with brine (20 mL x 3), dried over Na2SO4, filtered, and concentrated under reduced pressure to give a residue. The residue was purified by column chromatography (silica gel, ethyl acetate / methanol=1 / 0 to 10 / 1) to give 1-(3-(4-methyl-3-nitrophenyl)-1H-1,2,4-triazol-1- yl)propan-2-ol (400 mg, 55 %) as a white solid.1H NMR (400 MHz, CHLOROFORM-d) δ =8.53 (s, 1H), 8.11 (s, 1H), 8.06 (d, J = 8.0 Hz, 1H), 7.37 (d, J = 8.0 Hz, 1H), 4.35 - 4.21 (m, 2H), 4.12 - 4.01 (m, 1H), 3.67 - 3.53 (m, 1H), 2.62 (s, 3H), 1.32 (d, J = 6.4 Hz, 3H); MS (ESI): m / z for: C12H14N4O3 [M+H]+ calcd.: 263.11 [M+H]+ found: 263.1.

[0459] Step 2: To a solution of 1-(3-(4-methyl-3-nitrophenyl)-1H-1,2,4-triazol-1-yl)propan-2- ol (200 mg, 1.0 eq) in THF (5 mL) and ethanol (5 mL) was added Pd / C (100 mg, 10% purity, 0.1 eq) under N2. The suspension was degassed under vacuum and purged with H2 several times. The mixture was stirred under H2(15psi) at 25°C for 12 hours. The mixture was filtered and concentrated to give 1-(3-(3-amino-4-methylphenyl)-1H-1,2,4-triazol-1-yl)propan-2-ol (180 mg, crude) as a white solid. MS (ESI): m / z for: C12H16N4O [M+H]+ calcd.: 233.13 [M+H]+ found: 233.1.

[0460] Step 3: To a solution of 7-methylimidazo[1,2-a]pyridine-3-carboxylic acid (120 mg, 1.0 eq) and 1-(3-(3-amino-4-methylphenyl)-1H-1,2,4-triazol-1-yl)propan-2-ol (180 mg, 1.02 eq) in pyridine (2 mL) was added EDCI (157 mg, 1.2 eq). The mixture was stirred at 60 °C for 2 hours. The mixture was concentrated to give a residue. The residue was purified by prep-HPLC (column: C18150×30mm; mobile phase: [water(formic acid)-acetonitrile]; gradient:15%-45% B over 7 min) to give N-(5-(1-(2-hydroxypropyl)-1H-1,2,4-triazol-3-yl)-2-methylphenyl)-7- methylimidazo[1,2-a]pyridine-3-carboxamide (II-80, 40.72 mg, 13%) as a white solid.1H NMR (400 MHz, DMSO-d6) δ = 9.89 (s, 1H), 9.33 (d, J = 7.2 Hz, 1H), 8.48 (d, J = 15.2 Hz, 2H), 8.03 (s, 1H), 7.78 (d, J = 1.2 Hz, 1H), 7.55 (s, 1H), 7.37 (d, J = 8.0 Hz, 1H), 7.02 (d, J = 7.2 Hz, 1H), 5.11 - 4.96 (m, 1H), 4.19 - 3.95 (m, 3H), 2.42 (s, 3H), 2.31 (s, 3H), 1.11 (d, J = 6.0 Hz, 3H); MS (ESI): m / z for: C21H22N6O2[M+H]+ calcd.: 391.18 [M+H]+ found: 391.2.EXAMPLE 12 – Preparation of N-(5-(3-(3,3-difluoro-2-hydroxypropyl)-1,2,4-oxadiazol-5- yl)-2-methylphenyl)-7-((3-hydroxy-3-methylbutoxy)methyl)imidazo[1,2-a]pyridine-3- carboxamide (II-81)ate (1 g, 1.0 eq) in DMF (10mL) was added t-BuONa (655 mg, 1.5 eq) and 4-bromo-2-methylbutan- 2-ol (1.14 g, 1.5 eq). The reaction mixture was stirred at 25 °C for 12 hours. The reaction mixture was quenched with water (30 mL) and extracted with ethyl acetate (30 mL x 3). The combined organic layers were washed with brine (20 mL x 5), dried over Na2SO4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by column chromatography (silica gel, ethyl acetate:methanol=100 / 1 to 20 / 1) to give ethyl 7-((3-hydroxy-3- methylbutoxy)methyl)imidazo[1,2-a]pyridine-3-carboxylate (190 mg) as a white solid.1H NMR (400 MHz, methanol-d4) δ = 9.26 (d, J = 7.2 Hz, 1H), 8.22 (s, 1H), 8.08 (s, 1H), 7.67 (s, 1H), 7.17 (dd, J = 1.2, 6.8 Hz, 1H), 4.64 (s, 2H), 4.42 (q, J = 7.2 Hz, 2H), 3.73 (t, J = 6.8 Hz, 2H), 1.86 (t, J = 6.8 Hz, 2H), 1.41 (t, J = 7.2 Hz, 3H), 1.24 (s, 6H).

[0462] Step 2: To a solution of 5-(3-(2-((tert-butyldiphenylsilyl)oxy)-3,3-difluoropropyl)- 1,2,4-oxadiazol-5-yl)-2-methylaniline (183 mg, 1.1 eq) in toluene (2 mL) was added trimethylaluminium in toluene (2 M, 2.5 eq), the reaction mixture was stirred at 25 °C for 0.5 hour, then ethyl 7-((3-hydroxy-3-methylbutoxy)methyl)imidazo[1,2-a]pyridine-3-carboxylate (100 mg, 1 eq) was added, and the reaction mixture was stirred at 80 °C for 2 hours. The reaction mixture was quenched with saturated aqueous ammonium chloride solution (20 mL) then wasextracted with dichloromethane (25 mL x 2). The combined organic layers were washed with brine (25 mL x 2), dried over Na2SO4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by column chromatography (silica gel, petroleum ether / ethyl acetate=5 / 1 to 0 / 1) to give N-(5-(3-(2-((tert-butyldiphenylsilyl)oxy)-3,3-difluoropropyl)-1,2,4- oxadiazol-5-yl)-2-methylphenyl)-7-((3-hydroxy-3-methylbutoxy)methyl)imidazo[1,2-a]pyridine- 3-carboxamide (85 mg) as a white solid. MS (ESI): m / z for C42H47F2N5O5Si [M+H]+ calcd.: 768.4 [M+H]+ found: 768.4

[0463] Step 3: To a solution of N-(5-(3-(2-((tert-butyldiphenylsilyl)oxy)-3,3-difluoropropyl)- 1,2,4-oxadiazol-5-yl)-2-methylphenyl)-7-((3-hydroxy-3-methylbutoxy)methyl)imidazo[1,2- a]pyridine-3-carboxamide (83 mg, 1.0 eq) in THF (1 mL) was added TBAF (1 M, 1.1 eq). The mixture was stirred at 25 °C for 1 hour. The reaction mixture was diluted with water (30 mL) and extracted with ethyl acetate (50 mL x 2). The combined organic layers were washed with brine (25 mL x 2), dried over Na2SO4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by column chromatography (silica gel, petroleum ether / ethyl acetate=10 / 1 to 0 / 1) to give N-(5-(3-(3,3-difluoro-2-hydroxypropyl)-1,2,4-oxadiazol-5-yl)-2- methylphenyl)-7-((3-hydroxy-3-methylbutoxy)methyl)imidazo[1,2-a]pyridine-3-carboxamide (II-81, 42.18 mg) as an off -white solid.1H NMR (400 MHz, DMSO-d6) δ = 10.03 (s, 1H), 9.40 (d, J = 7.2 Hz, 1H), 8.57 (s, 1H), 8.21 (d, J = 1.6 Hz, 1H), 7.91 (dd, J = 1.6, 8.0 Hz, 1H), 7.67 (s, 1H), 7.57 (d, J = 8.0 Hz, 1H), 7.12 (dd, J = 1.2, 7.2 Hz, 1H), 6.23 - 5.84 (m, 2H), 4.58 (s, 2H), 4.25 (s, 1H), 4.23 - 4.12 (m, 1H), 3.61 (t, J = 7.2 Hz, 2H), 3.05 - 2.89 (m, 2H), 2.40 (s, 3H), 1.73 (t, J = 7.2 Hz, 2H), 1.12 (s, 6H); MS (ESI): m / z for C26H29F2N5O5[M+H]+ calcd.: 530.2 [M+H]+ found: 530.2.EXAMPLE 13 - Preparation of N-(5-(3-(3,3-difluoro-2-hydroxypropyl)-1,2,4-oxadiazol-5- yl)-2-methylphenyl)-6-((3-hydroxy-3-methylbutoxy)methyl)pyrazolo[1,5-a]pyridine-3- carboxamide (II-82) NH2O HO HO NH2

[0464] Step 1: To a solution of 3-methylbutane-1,3-diol (7.21 g, 2.5 eq) in DMF (100 mL) was added NaH (3.32 g, 60% purity, 3.0 eq) slowly at 0°C. The mixture was stirred at 25°C for 0.5 h. To the mixture was added 3-(bromomethyl)pyridine (7.0 g, 1.0 eq, HBr) and TBAI (511 mg, 0.05 eq). The mixture was stirred at 25°C for 12 hours. The mixture was diluted with saturated aqueous NH4Cl (100 mL) and extracted with ethyl acetate (50 mL x 3). The combined organic layers were washed with brine (50 mL x 3), dried over Na2SO4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by column chromatography (silica gel, petroleum ether / ethyl acetate=1 / 1) to give 2-methyl-4-(pyridin-3-ylmethoxy)butan-2- ol (1.8 g, 30 %) as colorless oil.1H NMR (400 MHz, chloroform-d) δ = 8.67 - 8.55 (m, 2 H), 7.77 - 7.65 (m, 1H), 7.34 - 7.29 (m, 1 H), 4.56 (s, 2 H), 3.75 (t, J = 6.0 Hz, 2 H), 1.84 (t, J = 6.0 Hz, 2 H), 1.26 (s, 6 H); MS (ESI): m / z for C11H17NO2 [M+H]+ calcd.: 196.3 [M+H]+ found:196.3.

[0465] Step 2: To a solution of 2-methyl-4-(pyridin-3-ylmethoxy)butan-2-ol (1.8 g, 1.0 eq) in acetonitrile (20 mL) was added O-(2,4-dinitrophenyl)hydroxylamine (1.84 g, 1.0 eq). The mixture was stirred at 40°C for 16 hours. The mixture was concentrated to give 1-amino-3-((3- hydroxy-3-methylbutoxy)methyl)pyridin-1-ium (1.95 g, crude) as a yellow oil. MS (ESI): m / z for C18H16N6O [M+H]+ calcd.: 211.14 [M+H]+ found: 211.3.

[0466] Step 3: To a solution of 1-amino-3-((3-hydroxy-3-methylbutoxy)methyl)pyridin-1-ium (1.95 g, 1.0 eq) and ethyl prop-2-ynoate (905 mg, 1.0 eq) in DMF (20 mL) was added K2CO3(3.19 g, 2.5 eq). The mixture was stirred at 25°C for 12 hours. The mixture was diluted with water (50 mL) and extracted with ethyl acetate (20 mL x 3). The combined organic layers were washed with brine (20 mL x 3), dried over Na2SO4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by column chromatography (silica gel, petroleum ether / ethyl acetate=20 / 1 to 15 / 1) to give ethyl 6-((3-hydroxy-3- methylbutoxy)methyl)pyrazolo[1,5-a]pyridine-3-carboxylate (300 mg, 10 %) as a yellow solid.1H NMR (400 MHz, chloroform-d) δ = 8.51 (s, 1 H), 8.41 (s, 1 H), 8.16 (d, J = 8.8 Hz, 1 H), 7.44 - 7.37 (m, 1 H), 4.59 (s, 2H), 4.45 - 4.37 (m, 2 H), 3.77 (t, J = 6.0 Hz, 2 H), 2.71 - 2.59 (m, 1 H), 1.85 (t, J = 6.0 Hz, 2 H), 1.43 (t, J = 7.2 Hz, 3 H), 1.28 (s, 6 H); MS (ESI): m / z for: C16H22N2O4 [M+H]+ calcd.: 307.16 [M+H]+ found: 307.3.

[0467] Step 4: To a solution of ethyl 7-((3-hydroxy-3-methylbutoxy)methyl)imidazo[1,2- a]pyridine-3-carboxylate (200 mg, 1 eq) in toluene (2 mL) was added Al(CH3)3 (2 M, 492 μL, 2.5 eq) under N2. The mixture was stirred at 25°C for 0.5 hour. To the mixture was added ethyl 6-((3-hydroxy-3-methylbutoxy)methyl)pyrazolo[1,5-a]pyridine-3-carboxylate (121 mg, 1.0 eq) and the mixture was stirred at 80°C for 2 hours. The mixture was cooled to room temperature. The mixture was poured into 20 mL of ice / water, then extracted with dichloromethane (20 mL x 3). The combined organic layers were washed with brine (20 mL), dried over Na2SO4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by column chromatography (silica gel, petroleum ether / ethyl acetate=3 / 1 to 1 / 3) to give N-(5-(3-(2-((tert- butyldiphenylsilyl)oxy)-3,3-difluoropropyl)-1,2,4-oxadiazol-5-yl)-2-methylphenyl)-6-((3- hydroxy-3-methylbutoxy)methyl)pyrazolo[1,5-a]pyridine-3-carboxamide (170 mg, 48%) as a yellow oil. MS (ESI): m / z for : C42H47F2N5O5Si [M+H]+ calcd.768.33 [M+H]+ found: 768.4.

[0468] Step 5: To a solution of N-(5-(3-(2-((tert-butyldiphenylsilyl)oxy)-3,3-difluoropropyl)- 1,2,4-oxadiazol-5-yl)-2-methylphenyl)-6-((3-hydroxy-3-methylbutoxy)methyl)pyrazolo[1,5-a]pyridine-3-carboxamide (170 mg, 1 eq) in THF (3 mL) was added TBAF (1 M, 265 μL, 1.2 eq). The mixture was stirred at 25°C for 12 hours. The mixture was concentrated to give a residue. The residue was purified by column chromatography (silica gel, petroleum ether / ethyl acetate=0 / 1 ) to give a white solid which was further purified by prep-HPLC (column: waters Xbridge 150*25mm* 5um; mobile phase: [water (ammonia hydroxide v / v)-acetonitrile]; gradient:18%-48% B over 10 min) to give N-(5-(3-(3,3-difluoro-2-hydroxypropyl)-1,2,4- oxadiazol-5-yl)-2-methylphenyl)-6-((3-hydroxy-3-methylbutoxy)methyl)pyrazolo[1,5- a]pyridine-3-carboxamide (II-82, 49.52 mg, 93.52 μmol, 42 % yield, 100% purity) as a white solid.1H NMR (400 MHz, DMSO-d6) δ = 9.76 (s, 1H), 8.81 (s, 1H), 8.78 (s, 1H), 8.26 - 8.20 (m, 2H), 7.90 - 7.85 (m, 1H), 7.56 - 7.53 (m, 1H), 7.52 - 7.48 (m, 1H), 6.22 - 5.85 (m, 2H), 4.54 (s, 2H), 4.22 (s, 1H), 4.21 - 4.11 (m, 1H), 3.58 (t, J = 7.2 Hz, 2H), 3.06 - 2.98 (m, 1H), 2.96 - 2.87 (m, 1H), 2.40 (s, 3H), 1.69 (t, J = 7.2 Hz, 2H), 1.10 (s, 6H); MS (ESI): m / z for: C26H29F2N5O5 [M+H]+ calcd.: 530.21 [M+H]+ found: 530.3. EXAMPLE 14 - Preparation of N-(5-(3-(3,3-difluorocyclobutyl)-1,2,4-oxadiazol-5-yl)-2- methylphenyl)-7-((2-hydroxy-2-methylpropoxy)methyl)imidazo[1,2-a]pyridine-3- carboxamide (II-83)

[0469] Step 1: To a solution of 3,3-difluorocyclobutane-1-carbonitrile (2 g, 1.0 eq) in ethanol (20 mL) was added hydroxylamine (2.26 g, 50% purity, 2.0 eq). The mixture was stirred at 70 °C for 2 hours. The reaction mixture was concentrated under reduced pressure to remove solventto title give (Z)-3,3-difluoro-N'-hydroxycyclobutane-1-carboximidamide (2.56 g, crude) as a colorless oil.1H NMR (400 MHz, DMSO-d6) δ = 9.07 (s, 1H), 5.44 (s, 2H), 2.85 - 2.60 (m, 5H).

[0470] Step 2: To a solution of (Z)-3,3-difluoro-N'-hydroxycyclobutane-1-carboximidamide (2.56 g, 1.0 eq) in NMP (30 mL) was added CDI (3.30 g, 1.2 eq). The mixture was stirred at 25 °C f...

Claims

We Claim:

1. A compound represented by Formula I:or a pharmaceutically acceptable salt thereof; wherein:RAis of either of the following structures:each of which is substituted by n occurrences of R3;R3represents independently for each occurrence oxo, halogen, -CN, -NO2, -OR, -OCRs, -SR, -NR2, -S(O)2R, -S(O)2NR2, -S(O)R, -S(O)NR2, -C(R)2OR, -C(O)R, -C(O)OR, C(O)NR2, -C(O)N(R)OR, -OC(O)R, -OC(O)NR2,N(R)C(O)OR, -N(R)C(O)R, -N(R)C(O)NR2, -N(R)C(NR)NR2, -N(R)NR2, -N(R)S(O)2NR2, - N(R)S(O)2R, -N=S(O)R2, -S(NR)(O)R, -N(R)S(O)R, -N(R)CN, -L2-R5, or an optionally substituted group selected from C1-6 aliphatic, C1-6 haloaliphatic, phenyl, naphthalenyl, a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring; a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur; or a 5-6 membered monocyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; an 8-10 membered bicyclic heteroaryl ring having 1-5 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 5-8 membered saturated or partially unsaturated bridged bicyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 6-11 membered saturated or partially unsaturated spirocyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; or a 6-11 membered saturated or partially unsaturated bicyclic heterocyclic ring having 1-3 heteroatomsindependently selected from nitrogen, oxygen, and sulfur; each of which is substituted with r instances of R; or: two R3groups on adjacent carbon atoms are taken together with the carbon atoms to which they attach to form an optionally substituted 4-7 membered saturated monocyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur, substituted with r instances of R;L2represents independently for each occurrence a Ci-6 bivalent saturated or unsaturated, straight or branched hydrocarbon chain wherein one, two, or three methylene units of the chain are optionally and independently replaced by -C(R)2-, -N(R)-, -N(R)C(O)-, - C(O)N(R)-, -N(R)S(O)2-, -S(O)2N(R)-, -O-, -C(O)-, -OC(O)-, -C(O)O-, -S-, -S(O)-, S(O)2- or -Cy-;Cy represents independently for each occurrence phenyl, a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring or a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur;R5represents independently for each occurrence hydrogen, OR, Ci-6 aliphatic, Ci-6 haloaliphatic, or phenyl fused to a 5-6 membered saturated heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur;X is O or S;R1represents independently for each occurrence halogen, -CN, -OR, -NR2, -C(O)R, - C(O)OR, -C(O)NR2, CI-6 alkyl, or Ci-6haloalkyl;L is a bond or -N(R)-, -N(R)C(O)-, -N(R)C(O)N(R)-, -C(O)N(R)-, -N(R)S(O)2- , -S(O)2N(R)-, -O-, -C(O)-, -OC(O)-, -C(O)O-, -S-, -S(O)-, or -S(O)2-;RBis phenyl, a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring; a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur; or a 5-6 membered monocyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; wherein RBis substituted with q occurrences of R2;R2represents independently for each occurrence halogen, oxo, Ci-6 aliphatic, phenyl, a 3- 7 membered saturated or partially unsaturated monocyclic carbocyclic ring; a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatomsindependently selected from nitrogen, oxygen, and sulfur; or a 5-6 membered monocyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; an 8-10 membered bicyclic heteroaryl ring having 1-5 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 5-10 membered saturated or partially unsaturated bridged bicyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 6-11 membered saturated or partially unsaturated spirocyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; or a 6-11 membered saturated or partially unsaturated bicyclic heterocyclic ring having 1-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur, or L'-R4; wherein R2is substituted with p occurrences of R6;L1represents independently for each occurrence a Ci-2 bivalent saturated straight or branched hydrocarbon chain wherein one methylene unit of the chain is optionally and independently replaced by -C(R)2-, -N(R)-, -N(R)C(O)-, -C(O)N(R)-, -N(R)S(O)2- , -S(O)2N(R)-, -O-, -C(O)-, -OC(O)-, -C(O)O-, -S-, -S(O)-, or -S(O)2-;R4represents independently for each occurrence a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring, or a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur;R6represents independently for each occurrence oxo, halogen, -CN, -NO2, -OR, -OCR3, -SR, -NR2, -S(O)2R, -S(O)2NR2, -S(O)R, -S(O)NR2, -C(R)2OR, -C(O)R, -C(O)OR, - C(O)NR2, -C(O)N(R)OR, -OC(O)R, -OC(O)NR2, -N(R)C(O)OR, -N(R)C(O)R, -N(R)C(O)NR2, -N(R)C(NR)NR2, -N(R)NR2, -N(R)S(O)2NR2, -N(R)S(O)2R, -N=S(O)R2, -S(NR)(O)R, -N(R)S(O)R, -N(R)CN, or optionally substituted phenyl;R7is hydrogen or C1-3 alkyl; each R is independently hydrogen, -CN, halogen, or an optionally substituted group selected from Ci-6 aliphatic; C1-6 haloaliphatic; phenyl; naphthal enyl; a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring; a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 5-6 membered monocyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; an 8-10 memberedbicyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 7-12 membered saturated or partially unsaturated bicyclic heterocyclic ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 5-8 membered saturated or partially unsaturated bridged bicyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 6-10 membered saturated or partially unsaturated spirocyclic ring having 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 6-11 membered saturated or partially unsaturated bicyclic carbocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur; or: two R groups on the same nitrogen are taken together with the nitrogen to form an optionally substituted 4-7 membered monocyclic saturated, partially unsaturated, or heteroaryl ring having, in addition to the nitrogen, 0-3 heteroatoms independently selected from nitrogen, oxygen, and sulfur; an 8-10 membered bicyclic heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; a 7-12 membered saturated or partially unsaturated bicyclic heterocyclic ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur; m is 0 or 1; n is 0, 1, 2, 3, 4, or 5; p is 0, 1, 2, 3, 4, or 5; and q is 0, 1, 2, 3, 4, or 5. The compound of claim 1, wherein the compound is a compound of Formula I.The compound of either of claims 1-2 wherein when L is a bond and RBis, X is S. The compound of either of claim 1 or 2, wherein X is O. The compound of either of claim 1 or 2, wherein X is S. The compound of any one of claims 1-5, wherein R1is halogen. The compound of any one of claims 1-5, wherein R1is Ci-6 alkyl. The compound of any one of claims 1-5, wherein R1is methyl. The compound of any one of claims 1-5, wherein R1is Ci-6 haloalkyl. The compound of any one of claims 1-5, wherein R1is -OR, -NR2, -C(O)R, -C(O)OR, -orC(O)NR2.The compound of claim 10, wherein R1is -OH, -OCH3, -NH2, -N(CH3)2, -C(O)CH3, - C(O)OCH3, -C(O)NH2, -C(O)NHCH3, or -C(O)N(CH3)2. The compound of any one of claims 1-5, wherein m is 0. The compound of any one of claims 1-11, wherein m is 1. The compound of any one of claims 1-11, wherein the compound is represented by the following or a pharmaceutically acceptable salt thereof:I-c I-d. The compound of any one of claims 1-11, wherein the compound is represented by the following or a pharmaceutically acceptable salt thereof:I-e. The compound of claim 1, wherein the compound is represented by either of the following or a pharmaceutically acceptable salt thereof:I-f I g- The compound of claim 1, wherein the compound is represented by one of the following or a pharmaceutically acceptable salt thereof:I-k 1-1. The compound of any one of claims 1-14, wherein n is 0. The compound of any one of claims 1-14, wherein n is 1. The compound of any one of claims 1-14, wherein n is 2. The compound of any one of claims 1-14, wherein n is 3. The compound of any one of claims 1-14, wherein n is 4. The compound of any one of claims 1-14, wherein n is 5. The compound of any one of claims 1-2 or 4-23, wherein RBis selected from:The compound of any one of claims 1-17 or 19-24, wherein at least one R3is halogen. The compound of any one of claims 1-17 or 19-24, wherein at least one R3is bromo. The compound of any one of claims 1-17 or 19-24, wherein at least one R3is -CN. The compound of any one of claims 1-27, wherein at least one R2is Ci-6 alkyl. The compound of any one of claims 1-27, wherein at least one R2is a 3-7 membered saturated or partially unsaturated monocyclic carbocyclic ring. The compound of claim 29, wherein at least one R2is a 3-4 membered saturated monocyclic carbocyclic ring. The compound of any one of claims 1-27, wherein at least one R2is a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur. The compound of claim 31, wherein at least one R2is a 4-5 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1 nitrogen atom. The compound of any one of claims 1-27, wherein at least one R2is iJ-R4. The compound of claim 33, wherein L1is a C1-2 bivalent saturated straight or branched hydrocarbon chain wherein one methylene unit of the chain is optionally and independently replaced by -C(R)2-, -N(R)-, -O-, -C(O)-, -OC(O)-, -C(O)O-, -S-, -S(O)-, or -S(O)2-. The compound of claim 33, wherein R4is a 3-6 membered saturated or partially unsaturated monocyclic carbocyclic ring.The compound of claim 33, wherein R4is a 3-7 membered saturated or partially unsaturated monocyclic heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur. The compound of any one of claims 1-36, wherein R6represents independently for each occurrence oxo, halogen, -CN, -OR, -OCR3, -SR, -NR2, or -S(O)2R. The compound of any one of claims 1-37, wherein R6represents independently for each occurrence halogen, -CN, -OR, or -S(O)2R. The compound of any one of claims 1-38, wherein R6represents independently for each occurrence fluoro, -CN, or -OH. The compound of any one of claims 1-27, wherein each R2is independently selected from:The compound claim 40, wherein each R2is independently selected fromA compound represented by Formula II:(II) wherein each of RA, X, R1, and m are as defined above in claim 1. The compound of any one of those depicted in Table 1 herein, or a pharmaceutically acceptable salt thereof. A pharmaceutical composition comprising a compound of any one of claims 1-43 and a pharmaceutically acceptable carrier. A method of inhibiting the activity of a c-kit kinase in a patient, comprising administering to said patient a compound of any one of claims 1-43. A method of treating a c-kit kinase mediated disease or disorder in a patient, comprising administering to said patient a compound of any one of claims 1-43. The method according to claim 46, wherein the c-kit kinase mediated disease or disorder is a mast-cell associated disease, a respiratory disease, an inflammatory disorder, an autoimmune disorder, a metabolic disease, a fibrotic disease, a dermatological disease, an allergic disease, a cardiovascular disease, or a neurological disorder. The method according to claim 46, wherein the c-kit kinase mediated disease or disorder is asthma, allergic rhinitis, pulmonary arterial hypertension (PAH), primary pulmonary hypertension (PPH), pulmonary fibrosis, hepatic fibrosis, cardiac fibrosis, scleroderma, irritable bowel syndrome (IBS), inflammatory bowel disease (IBD), urticaria, dermatosis, atopic dermatitis, allergic contact dermatitis, rheumatoid arthritis, multiple sclerosis, melanoma, a gastrointestinal stromal tumor, a mast cell tumor, mastocytosis, anaphylactic syndrome, food allergy, chronic rhinosinusitis, type I diabetes, type II diabetes, systemic sclerosis, allergic keratoconjunctivitis, vernal keratoconjunctivitis, Crohn’s disease, or systemic and cutaneous lupus erythematosus and dermatomyositis. The method according to claim 46, wherein the c-kit kinase mediated disease or disorder is mast cell gastrointestinal disease, prurigo nodularis, allergic conjunctivitis, eosinophilic esophagitis, mast cell activation syndrome, eosinophilic gastritis and / or eosinophilic duodenitis (EG / EoD), ulcerative colitis, eosinophilic gastritis (EG), or eosinophilic colitis (EC). The method of claim 46, wherein the c-kit kinase mediated disease or disorder is urticaria. The method of any one of claims 46-50, wherein the patient is a human.

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