MULTI-COMPARTMENT ORGAN-ON-CHIP TO REPRODUCE AND FUNCTIONALIZE AN ORGAN OF THE DIGESTIVE SYSTEM

Abstract

The present invention relates to a multi-compartment microfluidic device comprising a first cellular compartment (10) in which a target organ of the digestive system is reproduced and a second cellular compartment (40) comprising neurons (400), the second cellular compartment (40) being connected to the first cellular compartment (10) by a means forming a biological interface (50) to allow communication via neuronal connection (401) between the first cellular compartment (10) and the second cellular compartment (40). Figure 1

Description

Title of the invention: MULTICOMPARTMENTAL ORGAN-ON-CHIP FOR REPRODUCING AND FUNCTIONALIZING AN ORGAN OF THE DIGESTIVE SYSTEM FIELD OF INVENTION

[0001] The present invention relates to the field of microfluidic devices that mimic the functions of the organs (human or animal) of the digestive system (intestine, stomach, and colon) at the microscopic level. Such devices are also known as organ-on-a-chip. More specifically, the invention relates to a compact, adaptable, and customizable multi-compartment microfluidic device for each individual, enabling the in vitro reproduction, as close as possible to reality, of the functioning of the organs of the digestive system, for the purpose of analysis and / or diagnosis of these specific organs. STATE OF THE ART

[0002] Currently, organ-on-a-chip devices are known and represent a significant advance for research, particularly biomedical research and pharmacology. They are a promising emerging technology for personalized medicine, disease research, cosmetics, nutrition, and more. Indeed, these devices make it possible to test new molecules in a controlled environment without the need for animal testing or large-scale clinical trials, to study specific pathologies by reproducing the exact conditions under which they develop in the body, and to personalize treatments based on a given patient's cells, thus offering a more targeted and effective approach.

[0003] However, devices currently available on the market also have drawbacks. In the case of the digestive system, such devices do not allow for a very faithful reproduction of all the physiological characteristics of the organs concerned. For example, in the case of the intestine, whose surface is composed of the following four layers: a mucosa, a submucosa, a muscularis, and a serosa, none of the devices currently available on the market can effectively reproduce the relationships between the outermost layers, as well as the physiological interactions between these layers and their immediate environment. More specifically, still considering the example of the intestine, the mucosal layer itself consists of a layer mainly composed of epithelial cells, a layer of loose connective tissue called the lamina propria, and a very thin muscular layer called the muscularis mucosa.The internal surface. The intestinal lining has numerous finger-like projections called villi. The villi increase the surface area of ​​the intestine, which helps it absorb digested food. The main role of the lining is the assimilation of fluids, electrolytes, and nutrients. Beneath it lies the submucosa, a layer of connective tissue that surrounds the lining. It contains mucous glands, blood vessels, lymphatic vessels, and nerves. The specific characteristics of these layers and their interrelationships are not taken into account in existing devices, as they appear too complex to reproduce.This is especially true for the lamina propria, whose composition (mainly made up of an assembly of proteins, such as collagen and elastin, and fibroblasts upon which the epithelial cells rest), its thickness (approximately 1 mm in the human body, though varying from a few micrometers to a few millimeters), and its viscoelasticity are complex parameters. Thus, structurally reproducing such a layer, particularly with regard to its specific characteristics and its various interactions with the other layers of the organ and its immediate environment, represents an obstacle that no current device has yet been able to overcome.

[0004] Finally, currently available devices do not allow for a compact model integrating both a culture of epithelial cells from one of the organs of the digestive system and other compartments capable of reproducing the effects of vascularization and / or innervation. For example, epithelial cells reproducing the intestine cannot differentiate into physiological tissue without shear flow, whereas neuronal cells cannot withstand this same shear flow. Furthermore, epithelial cells require extensive physiological exchange to develop, while neurons differentiate poorly in an environment too open to physiological exchange.Finally, neurons cannot properly develop their extensions (axons and dendrites) if epithelial cells are cultured above them, hence the need for compartmentalization involving strong architectural constraints that must be overcome to obtain a compact and functional device.

[0005] Developing a device capable of reproducing the complexity of any organ of the digestive system, while taking into account its entire interaction environment, and which is adaptable to different organs, customizable for each patient, all-in-one, and extremely compact, would represent a major advance in the field of organs-on-a-chip. For example, it would thus become possible to evaluate the impact of a given molecule (in the context of applications as varied as nutrition, cosmetics, pharmaceuticals, medicine, biology, diagnostics, or personalized research (B2C)), taking into account all the functions of the organ concerned in the digestive system. Such an advance would allow, Furthermore, to drastically reduce prior testing on animals, thus responding to an ethical constraint that had previously been difficult to overcome.

[0006] Consequently, current devices do not allow for obtaining results integrating all the interactions of the target organ with its immediate environment, which prevents drawing satisfactory specific conclusions for a plurality of target organs. DESCRIPTION OF THE INVENTION

[0007] The inventors have developed, unexpectedly and surprisingly, an organ-on-a-chip type microfluidic device, making it possible to overcome all the problems mentioned above.

[0008] An objective of the present invention is to provide a compact organ-on-a-chip type microfluidic device that very faithfully reproduces the targeted digestive system organ, both in its structural complexity and in its interactions with its environment, thus enabling evaluation and testing related to the targeted organ in the many applications mentioned.

[0009] Thus, the present invention relates to a multi-compartment microfluidic device comprising:

[0010] - a first cellular compartment comprising a derived biological structure of an organ of the digestive system comprising epithelial cells of said organ of the digestive system, a cell culture substrate forming a surface on which said biological structure is disposed and being configured to promote the growth or quiescence of the epithelial cells of the biological structure and to permit, through itself, physiological exchanges with said epithelial cells,

[0011] - a second cellular compartment comprising neurons distributed over a cell culture substrate comprising a plurality of electrodes configured to measure the functional activity of neurons, and

[0012] - at least one means forming a biological interface to allow a communication via neuronal connection between the first cellular compartment and the second cellular compartment.

[0013] The present invention therefore offers several advantages, including:

[0014] - a most relevant reproduction, since we are reproducing within the first cellular compartment, the different sublayers of the mucosa of the targeted organ of the digestive system, notably mimicking the structure and interactional complexity of the lamina propria,

[0015] - increased functionalization of the target organ, on the one hand via the possibility to add a biological sample from an individual within the first cellular compartment and, on the other hand, via the possibility of reproducing the effects of innervation and / or vascularization on said organ by, respectively, the neurons of the second cellular compartment and endothelial cells present in the third cellular compartment,

[0016] - a generic, economical and standardized device since it allows the implementation of Cell culture (particularly pluripotent stem cells) from commercially available cell lines, while also enabling the personalization of the reproduced organ through the possibility of adding a biological sample from an individual. Alternatively, and for even greater personalization, it is also possible to culture pluripotent stem cells from the same individual from whom the biological sample is taken.

[0017] - an expanded test panel since the device according to the invention makes it possible to measure A multitude of effects can occur, such as reciprocal effects between a biological sample and the target organ to which it is applied, and the effects of other stimuli (e.g., the application of nutrients, creams, medications, probiotics, etc.), both internal and external to the first cellular compartment. An external stimulus to the first compartment can, for example, result from a deliberate modification within the third cellular compartment (e.g., stressing endothelial cells), the effects of which are transmitted to the cells of the first cellular compartment via the intercalated porous membrane. Other examples of external stimuli whose effects can be transmitted to the target organ (or a specific part thereof) include mechanical stimuli (such as a puncture), optical stimuli (application of light with a specific wavelength), and electrical or bioelectrical stimuli.Finally, the device according to the invention also makes it possible to measure the reciprocal effects between the biological environment of the first compartment (epithelial cells of the target organ and biological sample) and the neurons of the second cellular compartment whose role is to mimic the peripheral nervous system.

[0018] In the context of the invention, a "multi-compartment microfluidic device" is defined as a miniaturized device comprising several distinct compartments, each designed to house and culture cells of various cell types. Each compartment is designed to mimic a specific part of the organism, thereby enabling the reproduction of biological interactions between various tissues or organs in a controlled environment. The compartments are interconnected, for example, by microfluidic channels, allowing the transfer of fluids, nutrients, or biological signals, thus simulating the natural physiological exchanges between these parts of the organism.

[0019] In the context of the invention, the term "cell compartment" means a distinct section of a multi-compartment microfluidic device, dedicated to the culture of specific cells. Each cell compartment is isolated from the others. By being connected by biological interfaces (e.g., porous membranes or microchannels), controlled exchanges occur between the compartments. Each cellular compartment is designed to mimic a specific tissue or organ environment, enabling the culture of living cells under controlled conditions. Each compartment can accommodate cells of a particular type to replicate the biological functions and interactions of various parts of the organism in vitro. It promotes biological interactions by replicating the natural physiological functions and exchanges of cells with other compartments, while ensuring physical separation.

[0020] In the context of the invention, the term "digestive system organ" or "target organ" refers to the specific organ of the digestive system that is to be reproduced in the first compartment of the multi-compartment microfluidic device. This target organ is mimicked by culturing appropriate cells that recreate the biological, anatomical, and physiological functions of the organ in question, thus enabling the study of its interactions with other body systems in an in vitro environment. In the context of the invention, particular interest is given to the intestine, stomach, esophagus, and colon, whose respective mucous membranes (intestinal, duodenal, esophageal, and gastric) are covered with a layer of mucus-secreting epithelial cells that play a key role in exchanges and protection against the external environment.Reproducing these organs in the device allows for the study of mucosal-specific cellular interactions and the simulation of important biological processes such as absorption, secretion, immune defense, and interactions with the microbiota.

[0021] For the purposes of this invention, a "biological structure derived from a digestive system organ" means an entity formed from cells or tissues originating from one of the organs of the digestive system, such as the esophagus, stomach, small intestine, or colon. These biological structures may include, but are not limited to, monolayer epithelial cells, multilayer epithelial cells, a spheroid, an organoid, a tissue, or an expiant. These entities are used to model the biological functions and interactions specific to the organs of the digestive system in an experimental or therapeutic context.By way of non-limiting example, these structures (including monolayer epithelial cells, multilayer epithelial cells, spheroids or organoids) can be generated, at least partially, from induced pluripotent stem cells (iPSCs), derived and reprogrammed to mimic the specific characteristics of epithelial cells or other cell types specific to the organs of the digestive system and their mucosa.

[0022] In the context of the invention, "epithelial cells" refers to cells that form epithelial tissue, which constitutes the lining layer covering the internal and external surfaces of the body, including the skin, organs, blood vessels, and cavities. These cells play an essential role as a protective barrier, separating the body from the external environment, limiting water loss, and protecting against infections or external aggressions. Epithelial cells are also involved in secretory functions (like glandular cells), absorption (like enterocytes in the intestine), and the transport of substances.The invention focuses particularly on the epithelial cells of mucosal organs in the digestive system, such as the esophagus, stomach, small intestine, and colon, which play a key role in protection, mucus secretion, and nutrient absorption. These cells exist in various forms, such as squamous, cuboidal, or prismatic, and can be organized into monolayers or multilayers (stratified layers), depending on their function and location within the body. They can originate from different biological structures derived from the target organ of the digestive system, such as epithelial cells forming a multilayer, a spheroid, an organoid, a tissue, or an expiant.The epithelial cells used in the invention can be derived from various sources, such as immortalized cell lines, allowing for continuous and stable culture in the laboratory; already differentiated primary cells taken directly from an individual and then reimplanted to ensure the preservation of specific physiological characteristics; or induced pluripotent stem cells (iPSCs), of human (hiPSC) or animal origin, which are reprogrammed to give rise to epithelial cells with the desired characteristics. Advantageously, these epithelial cells form a multilayer structure, meaning that in culture, these cells form several successive layers to mimic the physiological barrier of the organ of origin. This multicellular structure reflects the natural morphology of epithelial cells in terms of protection, absorption, or secretion.

[0023] In the context of the invention, "multilayer" means a cellular structure composed of several superimposed layers of cells, enabling the reproduction of the architectural and functional complexity of biological tissues. In the context of the first cellular compartment, this multilayer can be formed on a cell culture substrate that must exhibit specific viscoelastic properties, allowing the recreation of an environment similar to that of the target skin model in which epithelial cells divide and organize themselves into a multilayer. In the context of the invention, "spheroid" means a three-dimensional structure composed of an aggregate of cells, primarily epithelial, which spontaneously organize themselves into a spherical shape. This structure allows for the partial recreation of natural cell interactions as well as cell differentiation and behavior in vivo, particularly with regard to growth, migration, and response to external stimuli such as drugs, nutrients, or microbial agents (pathogenic or beneficial).

[0024] In the context of the invention, an "organoid" is understood to be a three-dimensional structure derived from stem cells or primary cells, which functionally and structurally reproduces certain characteristics of an organ of the digestive system. An organoid reflects several aspects of the architecture and specific functions of the organ of origin, such as enzyme secretion, nutrient absorption, or immune response, and as such constitutes a biomimetic model.

[0025] In the context of the invention, "tissue" means an organized assembly of several types of cells from a digestive organ, cultured in the laboratory from biological samples. This tissue reproduces the interactions between epithelial cells and supporting or immune cells, and is used in particular to study the physiology and pathologies of digestive organs in a controlled environment.

[0026] In the context of the invention, the term "expiant" refers to a tissue fragment taken directly from an individual, whether human or animal. This sample retains the native architecture and function of the tissue and cells, making it possible to model biological and pathological processes under experimental conditions close to the in vivo physiological state. An expiant can, in particular, be used to observe tissue interactions, responses to treatments, and physiological exchanges within a tissue derived from the mucosa of the digestive organ that one seeks to reproduce.

[0027] In the context of this invention, "neurons" are defined as nerve cells specialized in the transmission of electrical and chemical signals within the nervous system. Generally, neurons are composed of three main parts: the soma, or cell body, which contains the nucleus and constitutes the metabolic center of the cell; the dendrites, branching extensions that receive signals from other cells; and the axon, a single extension often surrounded by a myelin sheath, which allows the rapid transmission of electrical signals to other cells or muscles. These cells play a crucial role in communication and the coordination of biological functions by transmitting signals between different parts of the body and enabling the body's sensory and motor responses.Within the framework of the invention, particular interest is given to the types of neurons that can be integrated into one of the cellular compartments of the device. according to the invention and capable of developing so as to innervate, via their respective nerve endings, one or more biological elements of another cellular compartment. Among these different types of neurons are sensory neurons, which transmit information from sensory receptors to the central nervous system for the perception of external stimuli such as pain, heat, or pressure; motor neurons, responsible for transmitting nerve signals to muscles to initiate voluntary and reflex movements; interneurons, which connect sensory neurons to motor neurons in the central nervous system, playing a relay and coordination role; and autonomic neurons, which control involuntary functions such as heart rate and digestion by relaying signals to internal organs.

[0028] In the context of the invention, "cell culture substrate" means a support, generally solid, that allows the adhesion, growth, and proliferation of cultured cells. The substrate can be made of various materials, such as glass, treated plastic, or biomaterials, and is often coated with cell adhesion proteins (such as fibronectin, collagen, or laminin) to promote cell attachment. Within the first cell compartment, the cell culture substrate must exhibit specific viscoelastic properties that mimic the lamina propria layer, thus ensuring a physicochemical environment close to the physiological conditions of the target organ.This substrate plays a crucial role in regulating cell behavior, influencing processes such as morphology, differentiation, and intercellular signaling, and is suitable for research and cell culture applications, particularly in the form of multilayer epithelial cells present in the first cellular compartment.

[0029] In the context of the invention, "natural or synthetic hydrogel" means a hydrophilic material capable of retaining a large amount of water within its structure while maintaining its shape, thanks to a three-dimensional network of polymers. Natural hydrogels are derived from biological sources, such as collagen, fibrin, hyaluronic acid, or agarose, and are often used for their biocompatible and biodegradable properties. In contrast, synthetic hydrogels are manufactured by chemical methods, using polymers such as alginate, polyethylene glycol (PEG), or photocrosslinkable polymers, allowing for precise modulation of their mechanical properties, porosity, and degradation time.

[0030] In the context of the invention, "naturally induced extracellular matrix from biological cells" means a complex network of macromolecules and proteins that is produced by living cells and that provides support structural and biochemical to tissues. This matrix is ​​composed of various components, such as collagen, glycoproteins, proteoglycans, and elastins, which interact dynamically with cells to regulate their behavior, proliferation, and differentiation. The naturally induced extracellular matrix plays a crucial role in tissue integrity and function by providing mechanical and chemical signals. By using biological cells to induce the formation of this matrix, a physiological environment that promotes cell interactions and biological exchange can be recreated.

[0031] In the context of the invention, "promoting the growth or quiescence of epithelial cells" means all the conditions and factors that influence the development, proliferation, and maintenance of epithelial cells in an active or resting state. Epithelial cell growth refers to their ability to divide, migrate, and organize themselves to form functional layers, while quiescence refers to a resting state in which the cells are metabolically active but not dividing.

[0032] In the context of the invention, "promoting physiological exchanges with epithelial cells" refers to all the mechanisms and conditions that allow epithelial cells to interact effectively with their environment and exchange substances essential for their function. These physiological exchanges may include the diffusion of nutrients, the absorption of molecules, the elimination of waste, as well as cell communication via chemical signals and signaling molecules. These interactions are crucial for maintaining homeostasis and proper tissue function.

[0033] In the context of the invention, a "biological sample of said target organ taken from an individual" means a sample of tissue, cells, or biomolecules from an individual's target organ, collected for the purpose of personalizing and functionalizing the cells mimicking that organ in the device. This sample may include various types of biological samples, such as organ-specific cells, tissue fragments, biological fluids, or samples of associated microbiota. For example, a sample of gut microbiota or intestinal epithelial cells may be used to adjust and adapt the gut-mimicking cell cultures in the device, in order to more accurately reproduce the physiological functions and interactions of the target organ in a given individual.

[0034] In the context of the invention, "individual" means any living organism, human or animal, from which biological samples can be taken to personalize and functionalize cells mimicking the target organ in the device. Humans are of particular interest for the collection of these samples, but animals, especially in the context of preclinical models or Comparative studies can also be used. These individuals serve as a biological source to adapt in vitro cell models to the physiological and pathological specificities of each organism.

[0035] In the context of the invention, the term "means forming a biological interface to enable communication by neuronal connection between at least two cellular compartments" means a system comprising a contact junction between cell populations within said cellular compartments, facilitating communication via neuronal connections. This means includes neuronal cells (neurons) of the second cellular compartment, enabling the transfer of biological information in the form of electrical or chemical signals between the second cellular compartment and the other cellular compartment with which it interacts.This biological interface means advantageously comprises at least one of the elements selected from the group consisting of fluidic microchannels; PDMS (polydimethylsiloxane) microchannels; a porous membrane, the porosity of which is advantageously between 10 nm and 40 pm and the pore density of which is advantageously between 10 and 1100 µm pores per cm2, advantageously between 1100 µm and 1100 µm pores per cm2; a porous capillary membrane, of polycarbonate, polyester, polyethylene terephthalate and / or polytetrafluoroethylene; a gel; a hydrogel and mixtures thereof.

[0036] In the context of the invention, an "intercalated porous membrane" is understood to mean a microporous structure specially designed to allow the selective passage of essential substances, such as gases, nutrients, ions, and fluids, between two distinct environments (between two cellular compartments, for example) while maintaining a physical barrier. This membrane can be composed of a uniform layer, a stack of layers, or an entanglement of fibers, often made from inert polymers (such as polycarbonate (PC), polyethylene terephthalate (PET), or polydimethylsiloxane (PDMS)), filamentous proteins (such as fibrin), or other materials. The pores or spacing of this membrane generally range from 0.1 to 10 microns, allowing the passage of molecules while preventing large solid species larger than 1 micron.This membrane plays an important role in the reproduction or support of biological processes by mimicking the natural exchanges that occur across biological interfaces, thus promoting a controlled transfer of substances while ensuring the integrity of separate compartments.

[0037] In the context of the invention, "functional activity of neurons" means the emission and propagation of a nerve message in the form of electrical signals and / or neurotransmitter secretions.

[0038] In the context of the invention, "induced pluripotent stem cells" are defined as cells derived from adult somatic cells reprogrammed to regain a pluripotent state, similar to that of embryonic stem cells. These cells, commonly called iPSCs (induced pluripotent stem cells), have the capacity to differentiate into virtually any cell type in the body, including neuronal, cardiac, hepatic, or epithelial cells. Human induced pluripotent stem cells (hiPSCs) can be derived from adult human cells originating, for example, from organs of the digestive system, such as cells from the intestine, stomach, or colon.

[0039] In the context of the invention, a "synthetic or natural mucus layer" is understood to be a viscous layer that typically covers the internal surfaces of certain organs and tissues, formed either from natural biological components or from artificial materials. The natural mucus layer is primarily composed of glycoproteins, such as mucins, as well as salts, water, and other macromolecules, which act to protect the underlying tissues from dehydration, pathogens, and irritants. This mucus also plays a role in the absorption and transport of substances across epithelial membranes, as well as in facilitating cell interactions. On the other hand, the synthetic mucus layer is created from artificial materials designed to mimic the functional and viscoelastic properties of the natural mucus layer.These materials may include synthetic polymers and hydrogels, which are formulated to provide lubrication, protection, and bioactivity similar to those of natural mucus.

[0040] In the context of the invention, "stimulus" means a specific agent or condition capable of eliciting a physiological response in a cellular, tissue, or organ environment, depending on its chemical, physical, mechanical, or biological nature. Stimuli thus include chemical stimuli, which include, among other things, hormones (e.g., insulin for regulating blood glucose), growth factors (e.g., epidermal growth factor EGF, which stimulates cell proliferation), and neurotransmitters (e.g., dopamine or serotonin for neuronal signaling). They also include mechanical stimuli, such as pressure (e.g., blood pressure exerted on vessel walls), elongation (e.g., the stretching of muscle cells), and substrate stiffness (the surface to which cells adhere, influencing their behavior).They also include physical stimuli, including temperature (e.g., thermal variations that induce a heat stress response), light (e.g., light signals detected by cells), and electrostimulation (e.g., . (electrical impulses applied to nerve cells). Finally, they also incorporate biological stimuli, such as microorganisms (pathogenic or beneficial, for example, bacteria or viruses triggering an immune response), and cytokines and chemokines produced in response to inflammation. These different categories of stimuli, acting alone or in combination, make it possible to reproduce a variety of physiological conditions and trigger specific responses in biological models.

[0041] Preferably, the present invention relates to a multi-compartment microfluidic device having the following technical characteristics, taken alone or in combination:

[0042] - the biological structure derived from an organ of the digestive system is chosen from the list consisting of: epithelial cells forming a monolayer, epithelial cells forming a multilayer, a spheroid, an organoid or a tissue or an expiant;

[0043] - the epithelial cells of the biological structure derived from an organ of the system digestive tract covers the entire surface of the cell culture substrate;

[0044] - the epithelial cells are enterocytes and / or are derived from stem cells induced pluripotent stem cells, preferably human induced pluripotent stem cells;

[0045] - epithelial cells are epithelial cells of the intestine, stomach, of esophagus or colon, preferably, the epithelial cells being intestinal epithelial cells;

[0046] - the cell culture substrate of the first cell compartment comprises a plurality of protuberances protruding from the surface of said cell culture substrate;

[0047] - the surface of the cell culture substrate of the first cell compartment is honeycomb or is smooth;

[0048] - the cell culture substrate of the first cell compartment has a thickness between 5 nm and 200 |am;

[0049] - the cell culture substrate of the first cell compartment has a module of Young's range between 1kPa and 80kPa, preferably between 3kPa and 15kPa;

[0050] - the cell culture substrate of the first cell compartment comprises a natural hydrogel, a synthetic hydrogel, or an extracellular matrix naturally induced from biological cells;

[0051] - the cell culture substrate of the first cell compartment is further loaded with collagen, elastin, proteoglycans, glycosaminoglycans and / or structural glycoproteins, which promotes cell growth, both epithelial cells and other cell types present;

[0052] - the concentration of collagen, elastin, proteoglycans, in glycosaminoglycans and / or glycoproteins of the structure of the cell culture substrate of the first cell compartment is between 1 and 10 mg / ml, preferably between 3 and 6 mg / ml;

[0053] - the cell culture substrate of the first cell compartment comprises fibroblasts and / or at least one immune cell, which allows for the reproduction of in vivo compositional variants of the lamina propria that incorporate such biological elements;

[0054] - at least a portion of the epithelial cells forming a monolayer or forming a multilayer is located within the cell culture substrate of the first cell compartment, which allows for more physiological growth of the cells concerned and promotes their differentiation and the formation of layers that make up the epithelial tissue;

[0055] - the device comprises intestinal-type muscle cells forming a layer located under the cell culture substrate of the first cell compartment or forming an intercalated layer within the cell culture substrate of the first cell compartment, which makes it possible to mimic the layer of muscle mucosa present in vivo in the organs of the digestive system;

[0056] - the device comprises a system for electrically stimulating muscle cells of the intestine including electrodes arranged to electrically stimulate muscle cells, which makes it possible to reproduce the in vivo functioning of these muscle cells;

[0057] - the first cellular compartment comprises a biological sample of said organ of the digestive system arranged on the biological structure, preferably said biological sample being of the microbiota, even more preferably said biological sample being of the intestinal microbiota;

[0058] - the first cellular compartment comprises a layer of synthetic mucus or natural covering at least partially the biological structure and / or biological sample of said first cellular compartment;

[0059] - the device includes a third cellular compartment, located below the first cellular compartment, comprising endothelial cells, and a porous membrane interposed between the first cellular compartment and the third cellular compartment to facilitate physiological exchanges between the first cellular compartment and the third cellular compartment;

[0060] - the endothelial cells are distributed over all the walls of the third cell compartment;

[0061] - the third cellular compartment comprises a cell culture substrate forming a surface on which endothelial cells are distributed, said substrate cell culture of the third cellular compartment being configured to promote the growth or quiescence of endothelial cells;

[0062] - the endothelial cells (200) of the third cellular compartment (20) are derived from induced pluripotent stem cells, preferably from human induced pluripotent stem cells;

[0063] - the neurons of the second cellular compartment are derived from stem cells induced pluripotent stem cells, preferably human induced pluripotent stem cells;

[0064] - the porous membrane intercalated between the first cellular compartment and the the third cellular compartment includes pores ranging from 400 nm to 100 pm;

[0065] - the second cellular compartment and / or the biological interface forming medium rest(s) on a porous membrane, the latter being separate or being of one piece with the porous membrane intercalated between the first cellular compartment and the third cellular compartment.

[0066] The invention also relates to the use of a multi-compartment microfluidic device according to one of the variants of the invention to detect the effects of a stimulus on an organ of the digestive system.

[0067] Advantageously, said stimulus is chosen from the list consisting of: a chemical stimulus, a biological stimulus, a mechanical stimulus and a physical stimulus.

[0068] Advantageously, said organ of the digestive system is chosen from the list consisting of the intestine, the stomach, the esophagus or the colon. Brief description of the drawings

[0069] [Fig-1]: [Fig.1] is a schematic perspective representation of the device the invention according to a first embodiment;

[0070] [Fig.2]: [Fig.2] is an exploded schematic representation of the device according to the first embodiment of the invention shown in [Fig.1];

[0071] [Fig.3]: [Fig.3] is an exploded schematic representation of a first and second variant embodiment of the device according to the first embodiment of the invention shown in [Fig.1];

[0072] [Fig.4]: [Fig.4] is a schematic top-view representation of the device according to the first embodiment of the invention shown in [Fig.1], of which an enlargement of the part illustrating the means forming a biological interface is shown.

[0073] [Fig.5]: [Fig.5] is a schematic cross-sectional representation, along the section plane AA shown in [Fig.4], of the device according to the first embodiment of the invention shown in [Fig.1];

[0074] [Fig.6]: [Fig.6] is a schematic cross-sectional representation, along the plane of section AA shown in [Fig.4], of the device according to the first embodiment of the invention shown in [Fig.1], in which the biological elements have been reproduced schematically;

[0075] [Fig.7]: [Fig.7] is a schematic cross-sectional representation, along the plane of section AA shown in [Fig.4], of a third variant of the device according to the first embodiment of the invention;

[0076] [Fig.8]: [Fig.8] is a schematic cross-sectional representation, along the plane of section AA shown in [Fig.4], of a fourth variant of the device according to the first embodiment of the invention;

[0077] [Fig.9]: [Fig.9] is a schematic cross-sectional representation, along the section plane AA shown in [Fig.4], of a device according to a second embodiment of the invention;

[0078] [Fig. 10]: [Fig. 10] is a schematic cross-sectional representation, along the section plane AA shown in [Fig. 4], of the device shown in [Fig. 9] in which the biological elements have been schematically reproduced.

[0079] The present invention is illustrated in a non-limiting way by the following examples.

[0080] The device 1 according to the invention is intended to allow a reproduction as close as possible to the in vivo conditions of the organ of the digestive system which is reproduced in the first cellular compartment 10. For reasons of clarity, the elements common to all the representations of said device 1 according to the invention are not necessarily identified from one figure to another although they remain evidently present.

[0081] To this end, the invention relates to a multi-compartment microfluidic device 1 comprising:

[0082] - a first cellular compartment 10 comprising a derived biological structure (103, 104) of an organ of the digestive system comprising epithelial cells 100 of said organ of the digestive system, a cell culture substrate 11 forming a surface on which said biological structure (103, 104) is disposed and being configured to promote the growth or quiescence of the epithelial cells 100 of the biological structure (103, 104) and to permit, through itself, physiological exchanges with said epithelial cells 100,

[0083] - a second cellular compartment 40 comprising 400 neurons distributed on a cell culture substrate 41 comprising a plurality of electrodes 44 configured to measure the functional activity of neurons 400, and

[0084] - at least one means 50 forming a biological interface to allow a communication via neuronal connection 401 between the first cellular compartment 10 and the second cellular compartment 40.

[0085] As illustrated in particular in Figures 1 to 3B, the device 1 according to the invention has a casing shape delimiting a volume within which several distinct cellular compartments coexist, namely three distinct compartments (10, 20, 40) for the first embodiment of the invention (Figures 1 to 8) and two distinct cellular compartments (10, 40) for the second embodiment of the invention (Figures 9 and 10). This internal volume defined by the device 1 is delimited by the lid 2 and the base 3.

[0086] The first cell compartment 10, as shown in all the figures, corresponds to an open well in which epithelial cells 100 from the target organ of the digestive system, whose function is to be mimicked, are deposited on a cell culture substrate 11. These cells 100 can be cultured to form a monolayer 103 of epithelial cells 100 (Figures 6 and 8) or a multilayer of epithelial cells 100 (Figures 7 and 10). Alternatively, according to unshown variations of the two embodiments of the device 1 according to the invention, another biological structure derived from said target organ of the digestive system, for example, a spheroid, an organoid, or a tissue or expiry, can be positioned. According to another unshown variation of the invention, at least a portion of the epithelial cells 100 of said biological structure can be contained within the cell culture substrate 11 itself.

[0087] The cell culture substrate 11 of this first cell compartment 10 is an important element of the invention since, by its nature, it allows for the mimicking of the composition and function of the lamina propria, a layer of loose connective tissue in the mucous membranes of the organs of the digestive system, whose role is crucial if one wishes to reproduce the in vivo environment of these organs. To this end, this cell culture substrate 11 has mechanical properties allowing control of the surface condition, porosity, viscosity, and roughness of the substrate. Furthermore, it is non-cytotoxic since it promotes the growth or quiescence of the epithelial cells 100. In this respect, this cell culture substrate 11 can be loaded with collagen and / or elastin in concentrations ranging from 1 to 10 mg / ml (preferably 3 to 6 mg / ml).To further mimic the composition and function of the lamina propria, the cell culture substrate 11 may also include fibroblasts and / or immune cells. As illustrated throughout the figures, this cell culture substrate 11 may have a smooth surface appearance, thus facilitating the deposition of the derived biological structure (103, 104). Alternatively, according to a variant not shown, the cell culture substrate 11. It can include a plurality of protuberances (micro or macro-shaped) projecting from its surface. It is thus possible to reproduce shapes mimicking the villi of the lamina propria. Alternatively, the surface of this cell culture substrate 11 can also be pitted.

[0088] In order to personalize the target organ of the digestive system that one wishes to reproduce in the first compartment 10, it is possible to deposit a biological sample 101 (such as microbiota or saliva) from said target organ, taken from an individual, onto the epithelial cells 100 of the derived biological system. This biological sample 101 can be positioned directly on the epithelial cells 100 or placed on a layer of synthetic or natural mucus 102, interposed between the layer of epithelial cells 100 and the biological sample 101 ([Fig. 8]), in order to protect the epithelial cells 100 against aggressions from elements of the biological sample 101, such as pathogens and irritants present in the microbiota or saliva.

[0089] According to an unshown embodiment of the invention, the first cell compartment may be in the form of a closed well, thus allowing for testing of other experimental conditions. Therefore, an inlet and an outlet for introducing the various biological elements (epithelial cells, biological sample) and / or for renewing the culture medium necessary for the growth of the epithelial cells will be provided within the device.

[0090] The second cellular compartment 40, as shown in all the figures, corresponds to a semi-closed well into which neurons 400 are introduced via the inlet 42 and outlet 43 provided for this purpose. The neurons 400 can thus be cultured in this second cellular compartment 40 and extend their respective neuronal terminals 402 to the first cellular compartment 10, via the microchannels 51 of the means 50 forming the biological interface provided for this purpose, thereby allowing the epithelial cells 100 to be innervated and their response to given stimuli to be measured. The neurons 400 are distributed on a substrate 41 comprising a plurality of electrodes 44, which makes it possible to digitize the behavior of the epithelial cells 100, mimicking the target organ and its function, in response to said stimuli.

[0091] The means 50 forming a biological interface to enable communication via neuronal connection 401 between the first cellular compartment 10 and the second cellular compartment 40, as shown in all the figures, corresponds to a plurality of fluidic microchannels 51 distributed side by side. According to an unshown embodiment of the invention, this means 50 may comprise, alternatively or cumulatively, other elements, such as a or several PDMS microchannels, an additional porous membrane, a porous capillary membrane, a gel, a hydrogel and mixtures thereof.

[0092] Advantageously, the device 1 according to the invention can be provided with a third cell compartment 20. This third cell compartment 20, as shown in Figures 1 to 8, illustrating a first embodiment of the device 1 according to the invention, corresponds to a semi-closed well into which endothelial cells 200 are introduced via the inlet 22 and outlet 23 provided for this purpose. The endothelial cells 200 can thus be cultured in this third cell compartment 20 so as to colonize all the walls of this compartment, thereby mimicking a blood vessel and allowing the reproduction of vascularization. Such a compartment contributes to functionalizing the device 1 according to the invention.The third cellular compartment 20 is located below the first cellular compartment 10 and is separated from it by the porous membrane 30, thus allowing the epithelial cells 100 present in the first compartment 10 to benefit from the effects of vascularization, generated by the endothelial cells 200 organized into a blood vessel, similar to the effects present in vivo.

[0093] The porous membrane 30, as shown in Figures 1 to 8, illustrating the first embodiment of the device 1 according to the invention, corresponds to a thin membrane interposed between the first cell compartment 10 and the third cell compartment 20 to facilitate physiological exchanges between these two compartments and their respective cells and other biological elements. According to a first variant of this first embodiment of the invention (Figures 1, 2 and 4 to 8), the porous membrane 30 extends over the entire surface of the device 1 and also forms the cell culture substrate 41 of the second cell compartment 40, a substrate incorporating the electrodes 44.This membrane 30 also forms the substrate on which the axons of neurons 400 extend through the plurality of microchannels 51 thus forming the neuronal connections 401 of the means 50 forming the biological interface allowing communication by neuronal connection between the first cellular compartment 10 and the second cellular compartment 40. .

[0094] According to the embodiment shown in Figure 3A, the porous membrane 30 further comprises additional electrodes 45 located at the interface between the first cell compartment 10 and the third cell compartment 20. Such additional electrodes 45 allow, for example, the application of an electrical stimulus to the cells of the first cell compartment 10 and / or the third cell compartment 20 and the study of the cellular response to such a stimulus. By way of an advantageous and non-limiting example of this embodiment of the invention, the first cell compartment can incorporate muscle cells (not shown) from the mucosa of the target organ, forming a layer located beneath the culture substrate. cellular 11 of the first cellular compartment 10 or forming an intercalated layer within the cell culture substrate 11. From then on, the additional electrodes 45 form an electrical stimulation system for these muscle cells, allowing them to be electrically stimulated, thus reproducing the muscle contractions that these cells can experience in vivo.

[0095] According to the variant of the invention shown in Figure 3B, the device 1 comprises a porous membrane 30 that does not entirely form the cell culture substrate 41 of the second cell compartment. This device comprises a separate membrane 31 forming the portion of said cell culture substrate 41 that incorporates the plurality of electrodes 44. This independent membrane 31 further has an opening 32 located at the interface between the first cell compartment 10 and the third cell compartment 20, so as not to interfere with the physiological exchanges between these two compartments.

[0096] The device 1 according to the invention operates as follows.

[0097] A biological structure derived from an organ of the digestive system, comprising epithelial cells 100 of said organ of the digestive system whose function and environment are to be mimicked and reproduced, is positioned on the surface of the cell culture substrate 11 of the first cell compartment 10. For example, intestinal epithelial cells 100 forming a monolayer 103 of epithelial cells 100 or a multilayer 104 of epithelial cells 100 are positioned. After these cells have colonized the entire surface of the cell culture substrate 11 of the first cell compartment 10, a biological sample 101 of said target organ, taken from an individual, can be positioned either directly onto said epithelial cells 100 or onto a layer of mucus 102 previously placed on these cells.The biological sample 101 in question is advantageously from the microbiota of the patient's target organ, thus enabling the biological system reproduced within the first cellular compartment 10 to be functionalized while being personalized to the individual from whom said biological sample 101 was taken. Alternatively, depending on the intended purpose, said biological sample 101 may be a biological fluid, such as saliva. Alternatively, depending on the stimuli to be tested, it is possible to place no additional biological elements on said epithelial cells 100.

[0098] In parallel, neurons 400 (for example, sensory neurons) are introduced and cultured within the second cellular compartment 40, with the aim of innervating the target organ of the digestive system reproduced in the first cellular compartment 10, via their respective neuronal terminals 402. To achieve this, the axons of the neurons 400 grow through the fluidic microchannels 51, thus forming neuronal connections 401 enabling communication by connection neuronal between the first cellular compartment 10 and the second cellular compartment 40. As already mentioned, these neurons 400 are distributed on a cell culture substrate 41 comprising a plurality of electrodes 44 allowing the functional activity of the neurons 400 to be measured.

[0099] In the advantageous embodiment of the invention shown in Figures 1 to 8, in which the device 1 includes a third cellular compartment 20, endothelial cells 200 are introduced and cultured within the third cellular compartment 20 with the aim of colonizing all of its walls, thus reproducing a blood vessel and enabling the device 1 according to the invention to ensure a vascularization function of the target organ reproduced in the first cellular compartment 10.

[0100] Thus, when a particular stimulus is applied to one of the biological elements of the device 1, it is possible to evaluate the response of the epithelial cells 100 and, more generally, of all the biological elements present in the first cellular compartment 10 forming the target organ to be mimicked, to said stimulus via the functional activity of the neurons 400, which is measured via the electrodes 44 connected to a measuring device (not shown).

[0101] By way of non-limiting example of the use and operation of the device 1 according to the invention, it is possible to evaluate the impact of a chemical stimulus, such as a new molecule or a new composition, or a biological stimulus, such as a pathogen (bacteria or virus that trigger an immune response) or a new nutrient, by applying it directly to the biological sample 101 or to the epithelial cells 100 of the biological structure derived from the organ of the digestive system that one wishes to reproduce. Such a stimulus causes reactions within the first cellular compartment 10, in particular within the epithelial cells 100. These reactions result in a modification of the electrical activity of the neuronal terminals 402, which is recorded by the electrodes 44 and subsequently analyzed.Alternatively or cumulatively, the application of this chemical or biological stimulus can be indirect, by applying it within the third cellular compartment 20, which can then be transmitted to the epithelial cells 100 of the first cellular compartment 10 via the intercalated porous membrane 30. This also allows for the evaluation of the influence of vascularization (e.g., the bioavailability of a new molecule) on such a stimulus.

[0102] By way of alternative, non-limiting example of the use and operation of the device 1 according to the invention, it is possible to evaluate the impact of a mechanical stimulus, such as a compressive force applied to the epithelial cells 100 of the biological structure derived from the organ of the digestive system that one wishes to reproduce. It is thus possible to evaluate the reactions within the first Cellular compartment 10, specifically epithelial cells 100, in response to such a stimulus. Such an example can be reproduced for a physical stimulus, such as the application of a given temperature, a light source, or an electric current, in order to evaluate the reactions within the first cellular compartment 10.

[0103] List of references

[0104] 1: multi-compartment microfluidic device

[0105] 2: lid of the multi-compartment microfluidic device

[0106] 3: base of the multi-compartment microfluidic device

[0107] 10: first cellular compartment

[0108] 11: cell culture substrate

[0109] 20: third cellular compartment

[0110] 21: entrance to the third cellular compartment

[0111] 22: exit from the third cellular compartment

[0112] 30: porous membrane

[0113] 31: separate membrane integrating the substrate of the second cellular compartment

[0114] 40: second cellular compartment

[0115] 41: cell culture substrate of the second covered cell compartment electrodes

[0116] 42: entrance to the second cellular compartment

[0117] 43: exit from the second cellular compartment

[0118] 44: electrode(s)

[0119] 45: additional electrode(s)

[0120] 50: means forming the biological interface between the first cellular compartment and the second cellular compartment

[0121] 51: fluidic microchannel

[0122] 100: epithelial cells of the target organ of the digestive system

[0123] 101: biological sample of said target organ of the digestive system taken from a individual

[0124] 102: mucus layer

[0125] 103: monolayer of epithelial cells

[0126] 104: multilayer of epithelial cells

[0127] 200: endothelial cell(s)

[0128] 400: neuron(s)

[0129] 401: neural connection(s)

[0130] 402: neuronal terminal(s)

Claims

Demands

1. Multi-compartment microfluidic device (1) comprising: - a first cellular compartment (10) comprising a biological structure (103; 104) derived from an organ of the digestive system comprising epithelial cells (100) of said organ of the digestive system, a cell culture substrate (11) forming a surface on which said biological structure (103; 104) is disposed and being configured to promote the growth or quiescence of the epithelial cells (100) of the biological structure (103;104) and allow, through itself, physiological exchanges with said epithelial cells (100), - a second cellular compartment (40) comprising neurons (400) distributed on a cell culture substrate (41) comprising a plurality of electrodes (44) configured to measure the functional activity of neurons (400), and - at least one means (50) forming a biological interface to allow communication by neuronal connection (401) between the first cellular compartment (10) and the second cellular compartment (40).;

2. Device (1) according to the preceding claim, wherein the biological structure (103; 104) derived from an organ of the digestive system is selected from the list consisting of: epithelial cells (100) forming a monolayer (103), epithelial cells (100) forming a multilayer (104), a spheroid, an organoid or a tissue or an expiant.

3. Device (1) according to any one of the preceding claims, wherein the epithelial cells (100) of the biological structure (103; 104) derived from an organ of the digestive system cover the entire surface of the cell culture substrate (11).

4. Device (1) according to any one of the preceding claims, wherein the cell culture substrate (11) of the first cell compartment (10) has a Young's modulus between 1kPa and 80kPa.

5. Device (1) according to any one of the preceding claims, wherein the cell culture substrate (11) of the first cell compartment (10) is further loaded with collagen, in elastin, in proteoglycans, in glycosaminoglycans and / or in structural glycoproteins.

6. Device (1) according to any one of the preceding claims, wherein the first cellular compartment (10) comprises a biological sample (101) of said organ of the digestive system disposed on the biological structure, preferably said biological sample (101) being of the microbiota, even more preferably said biological sample (101) being of the gut microbiota.

7. Device (1) according to any one of the preceding claims, comprising a third cell compartment (20), located below the first cell compartment (10), comprising endothelial cells (200), and a porous membrane (30) intercalated between the first cell compartment (10) and the third cell compartment (20) to facilitate physiological exchanges between the first cell compartment (10) and the third cell compartment (20).

8. Device (1) according to the preceding claim, wherein the endothelial cells (200) are distributed over all the walls of the third cellular compartment (20).

9. Use of a multi-compartment microfluidic device (1) according to any one of the preceding claims to detect the effects of a stimulus on an organ of the digestive system.

10. Use according to the preceding claim, wherein said stimulus is chosen from the list consisting of: - a chemical stimulus, - a biological stimulus, - a mechanical stimulus - a physical stimulus.

Images